Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

spack.io "pipeline" keyword

redundans 0.13c
Redundans pipeline assists an assembly of heterozygous genomes.
2 versions - Latest release: about 2 years ago - 99 stars on GitHub
py-pytest-workflow 1.6.0
A workflow-system agnostic testing framework that aims to make pipeline/workflow testing easy by ...
1 version - Latest release: over 1 year ago - 1 dependent package - 51 stars on GitHub - 1 maintainer
Top 9.6% on spack.io
py-galaxy-objectstore 22.1.1
The Galaxy object store framework and default implementations.
1 version - Latest release: over 1 year ago - 1 dependent package - 1,077 stars on GitHub - 1 maintainer
Top 7.4% on spack.io
py-galaxy-tool-util 22.1.5
The Galaxy tool utilities.
1 version - Latest release: over 1 year ago - 2 dependent packages - 1,077 stars on GitHub - 1 maintainer
Top 5.1% on spack.io
py-galaxy-util 22.1.2
Galaxy Generic Utilities
1 version - Latest release: over 1 year ago - 5 dependent packages - 1,077 stars on GitHub - 1 maintainer
Top 9.6% on spack.io
py-galaxy-containers 22.1.1
The Galaxy containers module - interfaces for modeling and interacting with container backends (d...
1 version - Latest release: over 1 year ago - 1 dependent package - 1,077 stars on GitHub - 1 maintainer
py-papermill 2.4.0
Parametrize and run Jupyter and nteract Notebooks.
1 version - Latest release: about 1 year ago - 5,165 stars on GitHub - 1 maintainer
Top 9.6% on spack.io
py-galaxy-job-metrics 22.1.1
The Galaxy job metrics framework and default plugins.
1 version - Latest release: over 1 year ago - 1 dependent package - 1,077 stars on GitHub - 1 maintainer
py-piper 0.12.3
A lightweight python toolkit for gluing together restartable, robust shell pipelines.
1 version - Latest release: over 1 year ago - 1 dependent package - 35 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics 7 workflow 6 genomics 6 dna 5 hacktoberfest 5 ngs 5 science 5 sequencing 5 usegalaxy 5 workflow-engine 5 python 3 wdl-devtools 1 workflow-testing 1 yaml 1 julia 1 jupyter 1 notebook 1 notebook-generator 1 notebooks 1 nteract 1 publishing 1 r 1 scala 1 bioinformatics-pipeline 1 python-toolkit 1 assembled-contigs 1 assembly 1 closing 1 contigs 1 docker-image 1 fasta 1 gap 1 genome-assembly 1 heterozygous 1 mate-pairs 1 paired-end 1 polymorphic 1 scaffolding 1 cromwell 1 miniwdl 1 nextflow 1 pytest 1 pytest-plugin 1 snakemake 1 test 1 testing 1 wdl 1