Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "atac-seq" keyword
maxatac 1.0.6
maxATAC: a suite of user-friendly, deep neural network models for transcription factor binding pr...4 versions - Latest release: 7 months ago - 1 dependent repositories - 32 downloads last month - 26 stars on GitHub - 1 maintainer
bintogene 1.23
A bin to gene conversion package.7 versions - Latest release: over 3 years ago - 25 downloads last month - 0 stars on GitHub - 1 maintainer
biowardrobe-cwl-workflows 1.0.20181213214400
Wrapped BioWardrobe's CWL files5 versions - Latest release: over 5 years ago - 1 dependent repositories - 26 downloads last month - 14 stars on GitHub - 1 maintainer
atacgraph 1.0
ATAC-seq pipeline1 version - Latest release: over 6 years ago - 14 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
85 versions - Latest release: about 1 month ago - 2 dependent repositories - 78.2 thousand downloads last month - 6 maintainers
basepair 2.1.1
Python client for Basepair's API85 versions - Latest release: about 1 month ago - 2 dependent repositories - 78.2 thousand downloads last month - 6 maintainers
cisvar 2.0.0b3
Calculate both pre and post frequencies for ChIP or ATAC style data1 version - Latest release: about 6 years ago - 14 downloads last month - 5 stars on GitHub - 1 maintainer
pybedgraph 0.5.43
A package for fast operations on 1-dimensional genomic signal tracks25 versions - Latest release: about 4 years ago - 1 dependent repositories - 70 downloads last month - 23 stars on GitHub - 1 maintainer
nucleoatac 0.3.4
python package for calling nucleosomes with ATAC-Seq1 version - Latest release: over 7 years ago - 1 dependent repositories - 16 downloads last month - 100 stars on GitHub - 1 maintainer
ngs-toolkit 0.25.1
A toolkit for NGS analysis with Python.31 versions - Latest release: over 3 years ago - 1 dependent repositories - 137 downloads last month - 13 stars on GitHub - 1 maintainer
rgt 1.0.2
Toolkit to perform regulatory genomics data analysis30 versions - Latest release: 11 months ago - 1 dependent repositories - 299 downloads last month - 100 stars on GitHub - 3 maintainers
rocco 0.12.1
Robust ATAC-seq Peak Calling for Many Samples via Convex Optimization56 versions - Latest release: 25 days ago - 636 downloads last month - 5 stars on GitHub - 1 maintainer
Top 6.1% on pypi.org
12 versions - Latest release: 4 months ago - 1 dependent package - 4 dependent repositories - 1.17 thousand downloads last month - 684 stars on GitHub - 1 maintainer
macs3 3.0.1
Model Based Analysis for ChIP-Seq data12 versions - Latest release: 4 months ago - 1 dependent package - 4 dependent repositories - 1.17 thousand downloads last month - 684 stars on GitHub - 1 maintainer
Top 4.8% on pypi.org
38 versions - Latest release: 11 months ago - 2 dependent packages - 42 dependent repositories - 2.01 thousand downloads last month - 684 stars on GitHub - 1 maintainer
macs2 2.2.9
Model Based Analysis for ChIP-Seq data38 versions - Latest release: 11 months ago - 2 dependent packages - 42 dependent repositories - 2.01 thousand downloads last month - 684 stars on GitHub - 1 maintainer
labxpipe 0.7.1
Genomics pipelines7 versions - Latest release: 10 months ago - 38 downloads last month - 684 stars on GitHub - 1 maintainer
tobias 0.16.1
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal43 versions - Latest release: 6 months ago - 372 downloads last month - 172 stars on GitHub - 4 maintainers
fseq2 2.0.3
Improving the feature density based peak caller with dynamic statistics.4 versions - Latest release: over 3 years ago - 1 dependent repositories - 37 downloads last month - 5 stars on GitHub - 1 maintainer
atacfragqc 0.4.7
Fragment Quality Control for ATAC-seq40 versions - Latest release: 10 months ago - 1 dependent repositories - 96 downloads last month - 1 stars on GitHub - 1 maintainer
chame 0.0.1.dev0
Chromatin accessibility module1 version - Latest release: about 2 years ago - 1 dependent repositories - 15 downloads last month - 3 stars on GitHub - 1 maintainer
Related Keywords
chip-seq
10
bioinformatics
8
peak-caller
5
dnase-seq
5
python
4
rna-seq
4
macs
3
poisson-equation
3
footprinting
2
ngs analysis
2
ATAC-Seq
2
sequencing
2
ngs
2
ChIP-seq
2
Motif Discovery
1
Motif Enrichment
1
HMM
1
Peak Calling
1
differential-peak-calling
1
DNase-seq
1
ATAC-seq
1
pypiper
1
deeplearning
1
genomics
1
scverse
1
scatac-seq
1
ranges
1
multiome
1
genome
1
chromatin
1
qc
1
fragment
1
kernel-density-estimation
1
idr-analysis
1
idr
1
fseq2
1
convex-optimization
1
chromatin-accessibiity
1
consensus-peaks
1
motif-analysis
1
motif
1
genome-analysis
1
maxatac
1
transcription-factor-binding
1
bins
1
genes
1
bioinformatics-analysis
1
bioinformatics-pipeline
1
biowardrobe
1
clip-seq
1
cwl
1
epigenetics
1
workflow
1
histograme
1
heatmap
1
dna-seq
1
ATACseq
1
ChIPseq
1
regression
1
biology
1
chipseq
1
molecular-biology
1
pipeline
1
published
1
bedgraph
1
bedgraph-files
1
nuclesosome
1
RNA-seq
1
project management
1
looper
1
ngs-analysis
1
project-management
1