Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "genome-analysis" keyword
nanorepeat 1.4.1
NanoRepeat: quantification of Short Tandem Repeats (STRs) from long-read sequencing data6 versions - Latest release: about 1 year ago - 24 downloads last month - 15 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
45 versions - Latest release: 3 months ago - 10 dependent packages - 21 dependent repositories - 64.2 thousand downloads last month - 39 stars on GitHub - 2 maintainers
biocommons.seqrepo 0.6.9
Non-redundant, compressed, journalled, file-based storage for biological sequences45 versions - Latest release: 3 months ago - 10 dependent packages - 21 dependent repositories - 64.2 thousand downloads last month - 39 stars on GitHub - 2 maintainers
seqrepo 0.0.0
alias for the biocommons.seqrepo package1 version - Latest release: almost 6 years ago - 1 dependent repositories - 126 downloads last month - 39 stars on GitHub - 1 maintainer
Top 5.6% on pypi.org
59 versions - Latest release: 11 months ago - 6 dependent packages - 28 dependent repositories - 87.4 thousand downloads last month - 17 stars on GitHub - 2 maintainers
bioutils 0.5.8
miscellaneous simple bioinformatics utilities and lookup tables59 versions - Latest release: 11 months ago - 6 dependent packages - 28 dependent repositories - 87.4 thousand downloads last month - 17 stars on GitHub - 2 maintainers
seqrepo-rest-service 0.2.2
SeqRepo REST Service2 versions - Latest release: 7 months ago - 16 downloads last month - 4 stars on GitHub - 1 maintainer
cpg-workflows 1.24.4
CPG workflows for Hail Batch112 versions - Latest release: 16 days ago - 1 dependent repositories - 3.24 thousand downloads last month - 0 stars on GitHub - 2 maintainers
gramep 0.1.0
GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle1 version - Latest release: about 1 month ago - 142 downloads last month - 0 stars on GitHub - 1 maintainer
ucscgenome 0.1
Simple access to the reference genomes at UCSC1 version - Latest release: almost 11 years ago - 2 dependent repositories - 7 downloads last month - 0 stars on GitHub - 1 maintainer
Top 3.0% on pypi.org
73 versions - Latest release: over 1 year ago - 7 dependent packages - 34 dependent repositories - 35.2 thousand downloads last month - 232 stars on GitHub - 2 maintainers
hgvs 1.5.4
HGVS Parser, Formatter, Mapper, Validator73 versions - Latest release: over 1 year ago - 7 dependent packages - 34 dependent repositories - 35.2 thousand downloads last month - 232 stars on GitHub - 2 maintainers
intervene 0.6.5
A tool for intersection and visualization of multiple gene or genomic region sets19 versions - Latest release: over 3 years ago - 1 dependent repositories - 156 downloads last month - 126 stars on GitHub - 1 maintainer
makegms 2.0.0
Fast and easy tool for genome mappability estimation3 versions - Latest release: over 5 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
5 versions - Latest release: 4 months ago - 13 dependent packages - 51 dependent repositories - 34 thousand downloads last month - 85 stars on GitHub - 1 maintainer
pyliftover 0.4.1
Pure-python implementation of UCSC ``liftOver`` genome coordinate conversion.5 versions - Latest release: 4 months ago - 13 dependent packages - 51 dependent repositories - 34 thousand downloads last month - 85 stars on GitHub - 1 maintainer
codonu 1.1.2
An integrated package for codon usage analysis5 versions - Latest release: 8 months ago - 80 downloads last month - 16 stars on GitHub - 1 maintainer
wigman 1.0.0
A package to plot genomic scores1 version - Latest release: over 4 years ago - 1 dependent repositories - 16 downloads last month - 2 stars on GitHub - 1 maintainer
maxatac 1.0.6
maxATAC: a suite of user-friendly, deep neural network models for transcription factor binding pr...4 versions - Latest release: 7 months ago - 1 dependent repositories - 57 downloads last month - 24 stars on GitHub - 1 maintainer
helen 0.0.23
RNN based assembly HELEN. It works paired with MarginPolish.19 versions - Latest release: about 4 years ago - 1 dependent repositories - 136 downloads last month - 68 stars on GitHub - 1 maintainer
cpg-pipes 0.3.10 removed
Hail Batch bioinformatics pipelines19 versions - Latest release: almost 2 years ago - 1 dependent repositories - 24 downloads last month - 1 stars on GitHub - 2 maintainers
cogclassifier 1.0.5
A tool for classifying prokaryote protein sequences into COG functional category7 versions - Latest release: over 1 year ago - 1 dependent repositories - 101 downloads last month - 37 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
13
genomics
8
sequencing
6
variant-analysis
5
variation
5
visualization
2
python
2
seqr
2
pipeline
2
hail
2
biocommons
2
cbi
1
cai
1
tAI
1
codonw
1
enc
1
codonW
1
rscu
1
tai
1
bigwig-data
1
nanopore-sequencing
1
genomics-visualization
1
heatmap
1
atac-seq
1
chip-seq
1
deeplearning
1
maxatac
1
transcription-factor-binding
1
genome-assembly
1
genome-scale-models
1
genome-sequencing
1
genomes
1
genomic-data-analysis
1
human-genetics
1
oxford-nanopore
1
COG
1
functional-annotation
1
functional-analysis
1
cog
1
comparative-genomics
1
microbial-genomics
1
protein
1
pacbio-sequencing
1
repeat-detection
1
short-tandem-repeats
1
HGVS
1
biological-sequence-analysis
1
maximum-entropy
1
python-bioinformatics
1
sequence-analysis
1
snps
1
ucsc
1
data-access
1
computational biology
1
genome variation
1
hgvs
1
bedtools
1
dna-sequences
1
heatmaps
1
intersection
1
pyton
1
venn-diagram
1
bloom-filter
1
quicksort
1
liftover
1
bioinformatics-analysis
1
bioinformatics-tool
1
codon-usage
1
codon
1
codon-bias
1
genomic-analysis
1
genome
1