Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "microbiology" keyword
commscores 0.0.10
A Python package for quantifying microbial interactions5 versions - Latest release: 10 months ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
sphae 1.3.3
Assembling pure culture phages from both Illumina and Nanopore sequencing technology8 versions - Latest release: about 1 month ago - 209 downloads last month - 18 stars on GitHub - 1 maintainer
tunacell 0.2.2
Analysis of Timeseries from dividing UNicellular microorganisms6 versions - Latest release: almost 5 years ago - 1 dependent repositories - 18 downloads last month - 1 stars on GitHub - 1 maintainer
lpsn 1.0.0
LPSN-API - Programmatic Access to LPSN3 versions - Latest release: 4 months ago - 1 dependent repositories - 39 downloads last month - 671 stars on GitHub - 1 maintainer
subtil 0.1.0
Subgroup discovery platform for examination of Bacterial TIme-Lapse microscopy dataset1 version - Latest release: about 6 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
binette 1.0.0
Binette: accurate binning refinement tool to constructs high quality MAGs.3 versions - Latest release: 4 months ago - 35 downloads last month - 8 stars on GitHub - 1 maintainer
pyctv-taxonomy 0.25
Download ICTV Virus Classifications as Python Objects1 version - Latest release: about 1 year ago - 8 downloads last month - 2 stars on GitHub - 1 maintainer
parathaa 0.1.0
PARATHAA: Preserving and Assimilating Region-specific Ambiguities in Taxonomic Hierarchical Assig...1 version - Latest release: 6 months ago - 14 downloads last month - 1 stars on GitHub - 1 maintainer
mgkit 0.5.8
Metagenomics Framework30 versions - Latest release: over 2 years ago - 2 dependent repositories - 101 downloads last month - 13 stars on GitHub - 1 maintainer
Top 8.0% on pypi.org
4 versions - Latest release: about 9 years ago - 8 dependent repositories - 120 downloads last month - 1 maintainer
qiime 1.9.1
Quantitative Insights Into Microbial Ecology4 versions - Latest release: about 9 years ago - 8 dependent repositories - 120 downloads last month - 1 maintainer
phylotoast 1.3.0
Tools for phylogenetic data analysis including visualization and cluster-computing support.1 version - Latest release: over 8 years ago - 2 dependent repositories - 15 downloads last month - 12 stars on GitHub - 1 maintainer
qiime-tools 1.1.2
Useful additions to the QIIME analysis pipeline including tools for data visualization and cluste...3 versions - Latest release: over 9 years ago - 3 dependent repositories - 14 downloads last month - 12 stars on GitHub - 1 maintainer
drep 3.5.0
De-replication of microbial genomes assembled from multiple samples63 versions - Latest release: 3 months ago - 1 dependent repositories - 264 downloads last month - 239 stars on GitHub - 1 maintainer
grna-create 0.0.2
A tool to create gRNAs2 versions - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 1 stars on GitHub - 1 maintainer
microbecensus 1.2.2
A command-line tool for estimating average genome size from shotgun sequence data8 versions - Latest release: 9 months ago - 1 dependent repositories - 37 downloads last month - 37 stars on GitHub - 1 maintainer
biobakery-workflows 0.15.1
bioBakery workflows: A collection of meta'omic analysis workflows24 versions - Latest release: about 4 years ago - 101 downloads last month - 1 maintainer
mlstclassifier-cd 0.3.4
multi-locus sequence type clade classifier for C.difficile8 versions - Latest release: 2 months ago - 35 downloads last month - 0 stars on GitHub - 1 maintainer
pioreactor 24.5.13
The core Python app of the Pioreactor. Control your bioreactor through Python.65 versions - Latest release: 28 days ago - 1 dependent repositories - 379 downloads last month - 87 stars on GitHub - 1 maintainer
p-tree 0.1.16
A program for counting CFUs in petri dishes11 versions - Latest release: over 6 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 1 maintainer
plasmidcanvas 1.0.0
A graphics package for creating customised plasmid maps2 versions - Latest release: 2 months ago - 11 downloads last month - 1 stars on GitHub - 2 maintainers
metawibele 0.4.7
MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome10 versions - Latest release: 9 months ago - 1 dependent repositories - 43 downloads last month - 18 stars on GitHub - 1 maintainer
bacdive 1.0.0
BacDive-API - Programmatic Access to the BacDive Database6 versions - Latest release: 5 months ago - 1 dependent package - 1 dependent repositories - 159 downloads last month - 2 maintainers
genbank-to 0.42
Convert GenBank format files to a swath of other formats7 versions - Latest release: about 2 years ago - 1 dependent repositories - 48 downloads last month - 11 stars on GitHub - 1 maintainer
pygenomeviz 0.4.4
A genome visualization python package for comparative genomics25 versions - Latest release: 8 months ago - 1 dependent package - 1 dependent repositories - 607 downloads last month - 232 stars on GitHub - 1 maintainer
kaptive 3.0.0b1
In silico serotyping1 version - Latest release: about 2 months ago - 82 downloads last month - 7 stars on GitHub - 1 maintainer
silvio 0.2.5
silvio is an environment for Simulation of Virtual Organisms. silvio contains several linked micr...12 versions - Latest release: 4 months ago - 1 dependent repositories - 135 downloads last month - 1 maintainer
calcfu 1.0.1
This package contains the CalCFU and Plate class for automatically calculating CFU counts under t...2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
cb-platon 1.4.0
Platon: identification and characterization of bacterial plasmid contigs from short-read draft as...10 versions - Latest release: almost 4 years ago - 1 dependent repositories - 50 downloads last month - 98 stars on GitHub - 1 maintainer
micrompn 1.0.1
MicroMPN: Software to estimate Most Probable Number (MPN) bacterial abundance from microplates.2 versions - Latest release: 12 months ago - 21 downloads last month - 0 stars on GitHub - 1 maintainer
kneaddata 0.12.0
13 versions - Latest release: over 1 year ago - 1 dependent repositories - 229 downloads last month - 1 maintainerhumann 3.6.1
HUMAnN: The HMP Unified Metabolic Analysis Network, version 315 versions - Latest release: over 1 year ago - 1 dependent repositories - 857 downloads last month - 1 maintainer
phispy 4.2.21
Prophage finder using multiple metrics31 versions - Latest release: over 2 years ago - 1 dependent repositories - 116 downloads last month - 64 stars on GitHub - 1 maintainer
shortbred 0.9.5
ShortBRED: a system for profiling protein families of interest at very high specificity in shotgu...1 version - Latest release: about 4 years ago - 1 dependent repositories - 14 downloads last month - 1 maintainer
humann2 2.8.2
HUMAnN2: The HMP Unified Metabolic Analysis Network 225 versions - Latest release: about 4 years ago - 6 dependent repositories - 162 downloads last month - 1 maintainer
anvio 2.4.0
An interactive analysis and visualization platform for 'omics data. See https://merenlab.org/proj...29 versions - Latest release: almost 7 years ago - 2 dependent repositories - 95 downloads last month - 1 maintainer
cocopye 0.4.0
Feature-based prediction of genome quality indices11 versions - Latest release: 4 months ago - 93 downloads last month - 1 stars on GitHub - 1 maintainer
phageboost 0.1.7
a Fast Prophage and Phage Predictor5 versions - Latest release: over 3 years ago - 1 dependent repositories - 56 downloads last month - 32 stars on GitHub - 1 maintainer
curveball 0.2.16
Predicting competition results from growth curves4 versions - Latest release: over 2 years ago - 2 dependent repositories - 108 downloads last month - 13 stars on GitHub - 1 maintainer
pybarrnap 0.5.0
Python implementation of barrnap (Bacterial ribosomal RNA predictor)7 versions - Latest release: 3 months ago - 55 downloads last month - 7 stars on GitHub - 1 maintainer
referenceseeker 1.8.0
ReferenceSeeker: rapid determination of appropriate reference genomes.12 versions - Latest release: over 2 years ago - 1 dependent repositories - 130 downloads last month - 85 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
25
microbiome
10
bacteria
9
genomics
8
python
7
metagenomic
7
microbial
7
metagenomics
7
genome
5
metatranscriptomic
5
phage
4
microbial-genomics
4
visualization
4
biology
4
humann
3
ngs
3
computational-biology
3
wgs
3
qiime
3
anadama2
3
assembly
3
genbank
2
gff
2
slurm
2
phylogenetics
2
QIIME
2
pbs
2
microbial ecology
2
16S
2
16s
2
cross-platform
2
hpc
2
microbiome-analysis
2
science
2
prophage
2
evolution
2
plasmids
2
raspberry-pi
1
raspberrypi
1
yeast
1
petri
1
colony
1
engineering
1
lab
1
labs
1
plasmid
1
plasmidmap
1
map
1
microbiology-publication
1
gene catalog
1
bioactive
1
metawibele
1
matplotlib
1
archived
1
biobakery
1
public
1
phenotypes
1
tools
1
strains
1
comparative-genomics
1
MBL
1
pipeline
1
sequencing
1
bam
1
SNP
1
SNV
1
genome quality
1
machine learning
1
biomath
1
genome-annotation
1
rna
1
microbial genomics
1
ani
1
mash
1
reference-genomes
1
refseq
1
genomics-visualization
1
gff3
1
synteny
1
serotyping
1
biotechnology
1
virtual cell
1
systems biology
1
calculator
1
r-shiny
1
contigs
1
mpn
1
kneaddata
1
shortbred
1
humann2
1
metatranscriptomics
1
shotgun
1
virus
1
metagenomics-binning
1
bioinformatics-tool
1
Metagenomics
1
Refinement
1
Binning
1
Prokaryote
1
Bioinformatics
1