Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "bam" keyword
fast5seek 0.1.1
Get paths for fast5 files contained in BAM, SAM, or fastq.2 versions - Latest release: over 5 years ago - 1 dependent repositories - 25 downloads last month - 11 stars on GitHub - 1 maintainer
snoopy 0.4.7
Browser based quality control tool to expedite reviewing predicted variants in next generation se...7 versions - Latest release: over 7 years ago - 3 dependent repositories - 47 downloads last month - 9 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
1 version - Latest release: 10 months ago - 2 dependent repositories - 1 maintainer
igvpool 0.2.1
A service for using IGV to generate snapshots of a bam1 version - Latest release: 10 months ago - 2 dependent repositories - 1 maintainer
weldx 0.6.7
Python API for the WelDX file format and standard21 versions - Latest release: 9 months ago - 1 dependent repositories - 133 downloads last month - 18 stars on GitHub - 3 maintainers
hchacha 1.0.5
Human CHromosome Accession CHAnge - Convert between different human chromosome naming systems (of...6 versions - Latest release: 11 months ago - 48 downloads last month - 1 maintainer
Top 8.7% on pypi.org
26 versions - Latest release: 7 months ago - 1 dependent repositories - 178 downloads last month - 458 stars on GitHub - 1 maintainer
biocode 0.11.0
Bioinformatics code libraries and scripts26 versions - Latest release: 7 months ago - 1 dependent repositories - 178 downloads last month - 458 stars on GitHub - 1 maintainer
lapels 1.1.1
Lapels - A remapper and annotator of in silico (pseudo) genome alignments10 versions - Latest release: about 8 years ago - 2 dependent repositories - 42 downloads last month - 5 stars on GitHub - 1 maintainer
vafator 2.2.0
Annotate a VCF file with AF, AD and DP from tumor and normal BAMs23 versions - Latest release: over 1 year ago - 1 dependent repositories - 183 downloads last month - 8 stars on GitHub - 1 maintainer
compas-model 0.4.3
This package provides a universal model datastructure for design, analysis, fabrication, and cons...5 versions - Latest release: 18 days ago - 426 downloads last month - 1 stars on GitHub - 1 maintainer
anvio 2.4.0
An interactive analysis and visualization platform for 'omics data. See https://merenlab.org/proj...29 versions - Latest release: almost 7 years ago - 2 dependent repositories - 95 downloads last month - 1 maintainer
pymasc 0.3.2
Python implementation to calc mappability-sensitive cross-correlation for fragment length estimat...12 versions - Latest release: over 4 years ago - 1 dependent repositories - 37 downloads last month - 2 stars on GitHub - 1 maintainer
bamread 0.0.16
Read bam files quickly into dataframes in Python15 versions - Latest release: about 1 year ago - 5 dependent packages - 2 dependent repositories - 684 downloads last month - 12 stars on GitHub - 1 maintainer
pydemux 1.0.1
Python package for demultiplexing raw sequencing reads in SAM/BAM format2 versions - Latest release: over 1 year ago - 22 downloads last month - 0 stars on GitHub - 1 maintainer
weldx-widgets 0.2.2
Python based widgets for the weldx core package4 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 20 downloads last month - 3 stars on GitHub - 2 maintainers
sufam 0.4.2
So U Found A Mutation?6 versions - Latest release: over 8 years ago - 4 dependent repositories - 48 downloads last month - 7 stars on GitHub - 1 maintainer
pileup2sam 0.3.0
Convert pileup to SAM3 versions - Latest release: over 4 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
ngsderive 4.0.0
Forensic analysis tool useful in backwards computing information from next-generation sequencing ...24 versions - Latest release: 8 months ago - 1 dependent repositories - 172 downloads last month - 11 stars on GitHub - 1 maintainer
mop-bam 0.0.6
Get well-mapped regions from bams13 versions - Latest release: almost 3 years ago - 1 dependent repositories - 103 downloads last month - 19 stars on GitHub - 1 maintainer
mbf-bam 0.3.0
Helpers to deal with BAM files6 versions - Latest release: 5 months ago - 1 dependent repositories - 123 downloads last month - 1 maintainer
bamr 0.2.0
bamr is a lightweight python library for reading bam files3 versions - Latest release: over 2 years ago - 23 downloads last month - 0 stars on GitHub - 1 maintainer
bampy 0.1.0
Python implementation of htslib supporting BAM, SAM, and BGZF compression1 version - Latest release: over 6 years ago - 1 dependent repositories - 26 downloads last month - 1 stars on GitHub - 1 maintainer
bamplot 0.9.0
bamplot python package1 version - Latest release: almost 8 years ago - 1 dependent repositories - 27 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
31 versions - Latest release: about 1 year ago - 3 dependent repositories - 158 downloads last month - 42 stars on GitHub - 1 maintainer
paleomix 1.3.8
Bioinformatics pipelines for HTS data31 versions - Latest release: about 1 year ago - 3 dependent repositories - 158 downloads last month - 42 stars on GitHub - 1 maintainer
fuc 0.37.0 💰
Frequently used commands in bioinformatics38 versions - Latest release: 9 months ago - 1 dependent package - 2 dependent repositories - 633 downloads last month - 44 stars on GitHub - 1 maintainer
bam2fasta 1.0.8 removed
tool for converting a bam file to fastas8 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 52 downloads last month - 8 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
10
sam
8
fastq
4
vcf
4
samtools
3
python
3
fasta
3
pileup
3
welding
2
hts
2
genetics
2
genomics
2
ngs
2
pipeline
2
cram
2
sequencing
2
visualization
2
variants
2
bed
2
weldx
2
htslib
2
mpileup
1
computational-biology
1
gene-model
1
next-generation-sequencing
1
strandedness
1
sequences
1
mutation
1
validation
1
Python
1
demultiplexing
1
squencing
1
pysam
1
quality-control
1
pypi
1
mappability
1
cython
1
cross-correlation
1
chip-seq
1
kmers
1
fastas
1
genomic
1
10x
1
maf
1
gtf
1
gff
1
cli
1
api
1
phylogeny
1
plotting
1
SEQ
1
bgzf
1
bai
1
library
1
light-weight
1
reading
1
high troughput sequencing
1
package
1
files
1
workflow-engine
1
workflow
1
strandedness-inference
1
exome
1
genome
1
welding-community
1
opendata
1
iso-9692-1
1
data-format
1
asdf
1
advanced-scientific-data-format
1
snapshot
1
headless
1
visualize
1
alignment
1
igv
1
generation
1
next
1
qc
1
control
1
quality
1
ont
1
nanopore
1
fast5
1
fast5seek
1
bigwig
1
analysis
1
algorithm
1
ChIP-Seq
1
NGS
1
SNV
1
SNP
1
MBL
1
shotgun
1
microbiology
1
metatranscriptomics
1
metagenomics
1
bom
1
bim
1
annotation
1
mod
1