Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "neuroscience" keyword

ebosc 0.10.dev0
extended Better Oscillation Detection, implemented in python3
1 version - Latest release: over 2 years ago - 1 dependent repositories - 14 downloads last month - 4 stars on GitHub - 1 maintainer
mindstorm 0.11.1
Mindstorm: Advanced analysis of neuroimaging data
18 versions - Latest release: 12 months ago - 1 dependent repositories - 161 downloads last month - 5 stars on GitHub - 1 maintainer
npbrain 0.3.0
NumpyBrain: A Just-In-Time compilation approach for neuronal dynamics simulation.
18 versions - Latest release: over 3 years ago - 1 dependent repositories - 36 downloads last month - 483 stars on GitHub - 1 maintainer
brainsatplay 0.1.2
A Python library for interfacing with Brains@Play
11 versions - Latest release: about 3 years ago - 52 downloads last month - 1 maintainer
labgraph 2.0.1
Research-friendly framework for in-lab experiments
5 versions - Latest release: over 2 years ago - 2 dependent repositories - 63 downloads last month - 155 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
klusta 3.0.16
Spike detection and automatic clustering for spike sorting
20 versions - Latest release: over 7 years ago - 2 dependent packages - 18 dependent repositories - 597 downloads last month - 50 stars on GitHub - 2 maintainers
borsar 0.1
tools for electrophysiological analysis, especially cluster-based tests.
1 version - Latest release: 7 months ago - 1 dependent package - 19 downloads last month - 8 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
nengo-gui 0.5.0
Web-based GUI for building and visualizing Nengo models.
20 versions - Latest release: 7 months ago - 3 dependent repositories - 335 downloads last month - 95 stars on GitHub - 4 maintainers
sco 0.4.0
Library for the prediction of cortical responses to visual stimuli: the Standard Cortical Observer
6 versions - Latest release: about 2 years ago - 1 dependent repositories - 20 downloads last month - 5 stars on GitHub - 1 maintainer
simply-nwb 0.6.2
Common NWB use cases and simplified interface for common usage
23 versions - Latest release: 5 months ago - 1 dependent repositories - 144 downloads last month - 1 stars on GitHub - 2 maintainers
Top 8.8% on pypi.org
csa 0.1.12
The Connection-Set Algebra implemented in Python
4 versions - Latest release: about 4 years ago - 1 dependent package - 5 dependent repositories - 896 downloads last month - 12 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
developer 0.0.0-alpha
The root package for Neurospaces components for GENESIS 3
1 version - Latest release: 10 months ago - 7 dependent repositories - 1 maintainer
esi-syncopy 2023.9
A toolkit for user-friendly large-scale electrophysiology data analysis. Syncopy is compatible wi...
9 versions - Latest release: 9 months ago - 1 dependent repositories - 75 downloads last month - 37 stars on GitHub - 1 maintainer
Top 9.8% on pypi.org
intern 1.4.1
Python SDK for interacting with neuroscience data via the Boss API.
24 versions - Latest release: over 1 year ago - 3 dependent packages - 11 dependent repositories - 218 downloads last month - 19 stars on GitHub - 2 maintainers
pyspike 0.8.0
A Python library for the numerical analysis of spiketrain similarity
13 versions - Latest release: 11 months ago - 2 dependent repositories - 57 downloads last month - 68 stars on GitHub - 2 maintainers
icnn 1.2.2
Deep image reconstruction from CNN features (Inverting CNN)
1 version - Latest release: over 4 years ago - 1 dependent repositories - 5 downloads last month - 33 stars on GitHub - 1 maintainer
decodanda 0.6.13
Geometric decoding of neural data with built-in best practices.
17 versions - Latest release: about 2 months ago - 61 downloads last month - 27 stars on GitHub - 1 maintainer
hypyp 0.5.0b2
The Hyperscanning Python Pipeline.
23 versions - Latest release: 4 months ago - 2 dependent repositories - 141 downloads last month - 69 stars on GitHub - 2 maintainers
k-wave-python 0.3.3
Acoustics toolbox for time domain acoustic and ultrasound simulations in complex and tissue-reali...
8 versions - Latest release: 2 months ago - 2 dependent repositories - 223 downloads last month - 75 stars on GitHub - 1 maintainer
bmtool 0.5.3
BMTool
32 versions - Latest release: about 2 months ago - 1 dependent repositories - 184 downloads last month - 4 stars on GitHub - 2 maintainers
vqt 0.1.3
Variable Q-Transform with PyTorch backend
4 versions - Latest release: 2 months ago - 66 downloads last month - 0 stars on GitHub - 1 maintainer
neurolib 0.6.2
Easy whole-brain neural mass modeling
23 versions - Latest release: almost 2 years ago - 1 dependent repositories - 216 downloads last month - 392 stars on GitHub - 1 maintainer
pyrastitcher 0.0.1
Provides a Python interface to the Terastitcher program.
1 version - Latest release: about 8 years ago - 2 dependent repositories - 6 downloads last month - 1 stars on GitHub - 1 maintainer
bluecellulab 2.6.12
Biologically detailed neural network simulations and analysis.
106 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 1.61 thousand downloads last month - 8 stars on GitHub - 1 maintainer
Top 3.4% on pypi.org
mne-bids 0.11.1
MNE-BIDS: Organizing MEG, EEG, and iEEG data according to the BIDS specification and facilitating...
17 versions - Latest release: over 1 year ago - 11 dependent packages - 50 dependent repositories - 16.4 thousand downloads last month - 123 stars on GitHub - 3 maintainers
hnccorr 2020.5.1
HNCcorr algorithm for cell detection in calcium-imaging.
4 versions - Latest release: about 4 years ago - 1 dependent repositories - 22 downloads last month - 12 stars on GitHub - 1 maintainer
open-ephys-audio 0.1.7
Scripts for acoustic stimulus presentation with open-ephys
3 versions - Latest release: about 1 month ago - 25 downloads last month - 0 stars on GitHub - 1 maintainer
element-electrode-localization 0.1.4
Electrode localization DataJoint element
4 versions - Latest release: about 1 year ago - 2 dependent repositories - 48 downloads last month - 0 stars on GitHub - 1 maintainer
pycrostates 0.5.0
A simple open source Python package for EEG microstate segmentation.
8 versions - Latest release: 4 months ago - 132 downloads last month - 33 stars on GitHub - 2 maintainers
spikelearn 0.1.2
Spiking neural networks for AI workflows and neuromorphic computing
3 versions - Latest release: over 1 year ago - 27 downloads last month - 2 stars on GitHub - 1 maintainer
blueetl-core 0.2.4
Core transformations for BlueETL
9 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 533 downloads last month - 1 stars on GitHub - 3 maintainers
Top 5.5% on pypi.org
rsatoolbox 0.1.5
Representational Similarity Analysis (RSA) in Python
45 versions - Latest release: 7 months ago - 1 dependent package - 3 dependent repositories - 1.47 thousand downloads last month - 155 stars on GitHub - 1 maintainer
mesoscopy 0.1.0
Analysis pipeline for rodent widefield calcium imaging data.
28 versions - Latest release: about 1 year ago - 1 dependent repositories - 99 downloads last month - 1 maintainer
mne-bids-pipeline 1.8.0
A full-flegded processing pipeline for your MEG and EEG data
13 versions - Latest release: 3 months ago - 1 dependent repositories - 102 downloads last month - 131 stars on GitHub - 2 maintainers
mne-nirs 0.6.0
An MNE compatible package for processing near-infrared spectroscopy data.
16 versions - Latest release: 7 months ago - 1 dependent repositories - 299 downloads last month - 73 stars on GitHub - 2 maintainers
psychoanalyze 0.8.9
Interactive analysis and simulation of psychophysical data.
34 versions - Latest release: 10 months ago - 1 dependent repositories - 163 downloads last month - 5 stars on GitHub - 1 maintainer
Top 5.0% on pypi.org
mne-connectivity 0.6.0
mne-connectivity: A module for connectivity data analysis with MNE.
6 versions - Latest release: 6 months ago - 6 dependent packages - 3 dependent repositories - 8.9 thousand downloads last month - 62 stars on GitHub - 2 maintainers
rsa3 0.0.0
Python Representational Similarity Analysis (RSA)
2 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 46 downloads last month - 155 stars on GitHub - 1 maintainer
plenoptic 1.0.2
Python library for model-based stimulus synthesis.
3 versions - Latest release: 7 months ago - 35 downloads last month - 44 stars on GitHub - 1 maintainer
Top 1.9% on pypi.org
antropy 0.1.6 💰
AntroPy: entropy and complexity of time-series in Python
4 versions - Latest release: 11 months ago - 13 dependent packages - 20 dependent repositories - 28.4 thousand downloads last month - 265 stars on GitHub - 1 maintainer
cmb 0.0.7
Cere-MEG-Bellum (CMB) - Cerbellum segmentation and forward solution calculation
7 versions - Latest release: about 2 years ago - 85 downloads last month - 1 maintainer
Top 6.4% on pypi.org
muselsl 2.2.2
Stream and visualize EEG data from the Muse headset.
15 versions - Latest release: over 1 year ago - 11 dependent repositories - 710 downloads last month - 582 stars on GitHub - 1 maintainer
sim2bids 2.0.1
App to preprocess and convert simulation data
40 versions - Latest release: over 1 year ago - 31 downloads last month - 3 stars on GitHub - 1 maintainer
naplib 2.0.0
Tools and functions for neural data processing and analysis in python
25 versions - Latest release: about 1 month ago - 1 dependent repositories - 63 downloads last month - 17 stars on GitHub - 1 maintainer
movement 0.0.16
Analysis of body movement
18 versions - Latest release: 26 days ago - 4 dependent repositories - 270 downloads last month - 53 stars on GitHub - 3 maintainers
Top 6.9% on pypi.org
openmeeg 2.5.8
Forward problems solver in the field of EEG and MEG.
12 versions - Latest release: 2 months ago - 1 dependent package - 8 dependent repositories - 1.9 thousand downloads last month - 70 stars on GitHub - 2 maintainers
cellfinder 1.2.0
Automated 3D cell detection in large microscopy images
100 versions - Latest release: 26 days ago - 3 dependent packages - 1.59 thousand downloads last month - 170 stars on GitHub - 2 maintainers
brayns 3.7.2
Brayns Python API
27 versions - Latest release: about 1 month ago - 1 dependent repositories - 106 downloads last month - 286 stars on GitHub - 1 maintainer
simple-spykes 0.1.0
Utility library for spike sorting quality metrics
4 versions - Latest release: about 1 month ago - 19 downloads last month - 0 stars on GitHub - 1 maintainer
biosimulations-modeldb 0.0.4
Command-line program for publishing the ModelDB model repository to BioSimulations.
3 versions - Latest release: over 2 years ago - 11 downloads last month - 0 stars on GitHub - 1 maintainer
gebaspike 1.1.0
gebaSpike - GUI designed to improve manual spike sorting of in-vivo electrophysiology data.
12 versions - Latest release: almost 4 years ago - 1 dependent repositories - 56 downloads last month - 1 stars on GitHub - 1 maintainer
nppy 0.2.1
Neural Pre-Processing: A Learning Framework for End-to-end Brain MRI Pre-processing.
4 versions - Latest release: 8 months ago - 12 downloads last month - 17 stars on GitHub - 1 maintainer
compneuropy 1.0.1
General package for computational neuroscience with ANNarchy.
16 versions - Latest release: 3 months ago - 1 dependent repositories - 164 downloads last month - 0 stars on GitHub - 1 maintainer
swcgeom 0.17.1
Neuron geometry library for swc format
27 versions - Latest release: 2 months ago - 190 downloads last month - 6 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
sleap 1.4.0
SLEAP (Social LEAP Estimates Animal Poses) is a deep learning framework for animal pose tracking.
67 versions - Latest release: 2 months ago - 2 dependent repositories - 834 downloads last month - 377 stars on GitHub - 2 maintainers
tfce-mediation 1.5.3
TFCE_mediation
37 versions - Latest release: over 5 years ago - 1 dependent repositories - 562 downloads last month - 29 stars on GitHub - 2 maintainers
sco-datastore 0.9.0
Library to manipulate objects in the Standard Cortical Observer Data Store
13 versions - Latest release: almost 7 years ago - 4 dependent repositories - 51 downloads last month - 0 stars on GitHub - 1 maintainer
ngclearn 1.0b4
Simulation software for building and analyzing arbitrary predictive coding, spiking network, and ...
7 versions - Latest release: about 1 month ago - 179 downloads last month - 85 stars on GitHub - 1 maintainer
Top 5.2% on pypi.org
mne-icalabel 0.6.0
MNE-ICALabel: Automatic labeling of ICA components from MEG, EEG and iEEG data with MNE.
8 versions - Latest release: 5 months ago - 3 dependent packages - 3 dependent repositories - 588 downloads last month - 84 stars on GitHub - 2 maintainers
aerzip 0.5.0
Useful tools to compress and decompress AEDAT files in Python
5 versions - Latest release: over 2 years ago - 30 downloads last month - 0 stars on GitHub - 1 maintainer
simplyfire 0.6.1
Customizable electrophysiology analysis software
8 versions - Latest release: 6 months ago - 1 dependent repositories - 39 downloads last month - 1 stars on GitHub - 2 maintainers
Top 6.4% on pypi.org
tensorpac 0.6.5
Tensor-based Phase-Amplitude Coupling
13 versions - Latest release: almost 4 years ago - 5 dependent packages - 8 dependent repositories - 2.01 thousand downloads last month - 83 stars on GitHub - 1 maintainer
probeplanner 0.1.5
Plan probe locations
4 versions - Latest release: over 3 years ago - 1 dependent repositories - 18 downloads last month - 10 stars on GitHub - 1 maintainer
pyllusion 0.0.12 💰
A Parametric Framework to Generate Visual Illusions.
8 versions - Latest release: almost 3 years ago - 1 dependent repositories - 82 downloads last month - 53 stars on GitHub - 2 maintainers
nwb-datajoint 0.2.6
Neuroscience data pipeline for reproducible research used by Loren Frank Lab, UCSF
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 12 downloads last month - 78 stars on GitHub - 1 maintainer
ocpy 0.5.3
Deprecated. Use ndio instead.
10 versions - Latest release: over 8 years ago - 2 dependent repositories - 36 downloads last month - 1 maintainer
element-miniscope 0.3.2
Miniscope DataJoint Element
4 versions - Latest release: 11 months ago - 1 dependent repositories - 27 downloads last month - 1 stars on GitHub - 1 maintainer
sleepytimes 1.0.2
Tools for EEG, ECoG, iEEG, especially for sleep
2 versions - Latest release: over 6 years ago - 1 dependent repositories - 26 downloads last month - 1 maintainer
muse-py 0.0.1
A Python library for connecting and communicate with MUSE headbands. Uses Bleak as the underlying...
1 version - Latest release: over 3 years ago - 1 dependent repositories - 9 downloads last month - 1 maintainer
dfpy 0.1.0
DFPy: A backend-free numerical integration library for differential equations
1 version - Latest release: over 3 years ago - 1 dependent repositories - 21 downloads last month - 468 stars on GitHub - 1 maintainer
d2b 1.4.2
Organize data in the BIDS format
21 versions - Latest release: almost 2 years ago - 6 dependent repositories - 61 downloads last month - 0 stars on GitHub - 1 maintainer
sco-client 0.5.0
Library to interact with Standard Cortical Observer Web API
5 versions - Latest release: almost 7 years ago - 1 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
pynamicgain
Dynamic Gain input generation for distributed PClamp setups.
1 version - 1 maintainer
neuroner 0.0.3
named entity recognition for neurons
3 versions - Latest release: over 8 years ago - 2 dependent repositories - 14 downloads last month - 7 stars on GitHub - 1 maintainer
blenderneuron 2.0.4
Interface for Blender <-> NEURON
5 versions - Latest release: about 4 years ago - 82 downloads last month - 1 maintainer
np-vba 0.13.2
Python package for analyzing behavioral data for Brain Observatory: Visual Behavior. Forked to sp...
2 versions - Latest release: about 1 year ago - 1 dependent package - 9 downloads last month - 21 stars on GitHub - 1 maintainer
chemesis3 0.0.0-alpha
Kinetic reaction and biochemical reaction pathways for G-3.
1 version - Latest release: over 12 years ago - 2 dependent repositories - 12 downloads last month - 1 maintainer
scikit-brain 0.3.3
BrainPy: A Toolbox for Computational Neuroscience Study and Research
1 version - Latest release: over 3 years ago - 1 dependent repositories - 11 downloads last month - 458 stars on GitHub - 1 maintainer
oursin 0.6.5
Urchin - Universal Renderer Creating Helpful Images for Neuroscience Python API
18 versions - Latest release: about 1 month ago - 1 dependent repositories - 527 downloads last month - 8 stars on GitHub - 1 maintainer
filemanager 1.0.12
13 versions - Latest release: almost 7 years ago - 1 dependent repositories - 146 downloads last month - 1 maintainer
expcontrol 0.2.3
Easy control of typical experiments in psychology and neuroscience, including stimulus presentati...
7 versions - Latest release: about 8 years ago - 2 dependent repositories - 27 downloads last month - 1 maintainer
dynamicspy 0.1.0
DynamicsPy: A backend-free numerical integration software for differential equations
1 version - Latest release: over 3 years ago - 1 dependent repositories - 10 downloads last month - 483 stars on GitHub - 1 maintainer
pyleida 1.0
Python package to execute the Leading Eigenvector Dynamics Analysis (LEiDA) on functional MRI data
1 version - Latest release: over 1 year ago - 1 dependent repositories - 9 downloads last month - 6 stars on GitHub - 1 maintainer
pyradigm 0.6.5
Python-based data structure to improve handling of datasets in machine learning workflows
12 versions - Latest release: about 1 year ago - 2 dependent packages - 5 dependent repositories - 94 downloads last month - 26 stars on GitHub - 1 maintainer
hdmf-docutils 0.4.7
Collection of CLIs, scripts and modules useful to generate the NWB documentation
8 versions - Latest release: 2 months ago - 4 dependent packages - 7 dependent repositories - 23.5 thousand downloads last month - 0 stars on GitHub - 5 maintainers
cubids-bond-fork 0.1.0
BIDS On Disk Editor
1 version - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 94 downloads last month - 18 stars on GitHub - 1 maintainer
expflow 0.2.0
A Python library for controlling the flow of psychological experiments.
33 versions - Latest release: 12 months ago - 186 downloads last month - 0 stars on GitHub - 1 maintainer
mne-gui-addons 0.1
MNE-Python GUI addons.
1 version - Latest release: about 1 year ago - 1 dependent package - 245 downloads last month - 0 stars on GitHub - 1 maintainer
eeg-positions 2.1.0
Compute and plot standard EEG electrode positions.
2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 121 downloads last month - 58 stars on GitHub - 1 maintainer
csng-invariances 0.0.4
Reimplementation of Kovacs 2021: Finding invariances in sensory coding through gradient methods. ...
2 versions - Latest release: almost 3 years ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
Top 3.6% on pypi.org
snntorch 0.9.1
Deep learning with spiking neural networks.
43 versions - Latest release: about 2 months ago - 2 dependent packages - 7 dependent repositories - 6.04 thousand downloads last month - 1,103 stars on GitHub - 1 maintainer
spikingtorch 0.1.1
Inference and backprop training of spiking neural networks in Pytorch
2 versions - Latest release: about 1 year ago - 12 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
klustakwik2 0.2.7
Clustering for high dimensional neural data
12 versions - Latest release: about 5 years ago - 1 dependent package - 10 dependent repositories - 143 downloads last month - 28 stars on GitHub - 4 maintainers
pythonmuse 1.0.0
A Python library for connecting and communicate with MUSE headbands. Uses Bleak as the underlying...
1 version - Latest release: about 3 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
pykilosort 1.4.6
Python port of KiloSort 2
1 version - Latest release: 9 months ago - 1 dependent repositories - 23 downloads last month - 50 stars on GitHub - 1 maintainer
fed3bandit 0.0.5
Package to analyze FED3Bandit files.
5 versions - Latest release: 8 months ago - 37 downloads last month - 0 stars on GitHub - 1 maintainer
bluepyemodel 0.0.113
Blue Brain Python Electrical Modeling Pipeline
101 versions - Latest release: 25 days ago - 1.08 thousand downloads last month - 3 stars on GitHub - 2 maintainers
brainatlas-api 0.0.2rc0
A lightweight python module to interact with atlases for systems neuroscience
4 versions - Latest release: about 4 years ago - 1 dependent repositories - 34 downloads last month - 113 stars on GitHub - 3 maintainers
uncertainpy 1.2.3
A python toolbox for uncertainty quantification and sensitivity analysis tailored towards neurosc...
13 versions - Latest release: over 3 years ago - 2 dependent repositories - 130 downloads last month - 210 stars on GitHub - 1 maintainer
braininvaders2012 0.1
Brain Invaders 2012 Dataset
1 version - Latest release: about 2 years ago - 18 downloads last month - 4 stars on GitHub - 1 maintainer
Related Keywords
python 140 neuroimaging 74 brain 59 eeg 54 electrophysiology 53 computational-neuroscience 38 simulation 32 machine-learning 29 science 28 visualization 24 neuron 23 modeling 21 psychology 21 analysis 20 EEG 19 mri 18 brain-computer-interface 18 simulator 18 computational 17 dynamical-systems 17 spiking-neural-networks 16 bci 16 bids 16 meg 16 deep-learning 15 fmri 15 research 14 statistics 14 datajoint 14 biohybrid-computing 13 biohybrid 13 chaos 13 chaos-theory 13 microscopy 13 neural-networks 13 vision 13 tes 13 data-analysis 13 behavior 11 neurons 11 brainpy 11 muse 11 nwb 11 pytorch 10 cortex 10 brain-dynamics-modeling 10 python3 10 neural networks 10 calcium-imaging 10 neurophysiology 10 ble 9 dynamics 9 machine learning 9 connectomics 9 data 9 data analysis 9 neuroscience-methods 9 lsl 9 tvb 8 GENESIS 8 spike-sorting 8 matlab 8 neurosimulator 8 segmentation 8 ecog 8 deep learning 8 electroencephalography 8 biological-simulations 8 computational neuroscience 8 registration 8 connectivity 7 imaging 7 model 7 MEG 7 signal-processing 7 bioinformatics 7 connectome 7 spike 7 open-science 7 nifti 7 brain-simulations 7 UDP 7 brain-inspired-computing 7 brian 7 neuroscience-m 7 animal 7 mri-images 7 image-processing 7 magnetoencephalography 6 electrocorticography 6 neural-network 6 dicom 6 dcm2niix 6 bids-format 6 differential-equations 6 experiment 6 neuroanatomy 6 neuroinformatics 6 morphology 6 open-source 6