crates.io "bam" keyword
View the packages on the crates.io package registry that are tagged with the "bam" keyword.
rasusa 2.1.1
Randomly subsample reads or alignments15 versions - Latest release: 5 days ago - 15.9 thousand downloads total - 232 stars on GitHub - 1 maintainer
rumina 0.9.81
High-throughput UMI-aware deduplication of next-generation sequencing data4 versions - Latest release: 2 days ago - 1.23 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 7.4% on crates.io
14 versions - Latest release: 8 months ago - 1 dependent package - 37 dependent repositories - 225 thousand downloads total - 864 stars on GitHub - 1 maintainer
hts-sys 2.2.0
This library provides HTSlib bindings.14 versions - Latest release: 8 months ago - 1 dependent package - 37 dependent repositories - 225 thousand downloads total - 864 stars on GitHub - 1 maintainer
merkurio 1.0.0
Quick k-mer-based FASTA/FASTQ sequence record extraction, and SAM/BAM record filtering plus file ...1 version - Latest release: 4 days ago - 0 downloads total - 2 stars on GitHub - 1 maintainer
rustbam 0.2.0
Rust-powered BAM depth extraction with Python bindings1 version - Latest release: 6 months ago - 590 downloads total - 0 stars on GitHub - 1 maintainer
bio-io 0.3.2
My utilities for reading and writing bioinformatics file formats6 versions - Latest release: almost 2 years ago - 1 dependent package - 7.11 thousand downloads total - 52 stars on GitHub - 1 maintainer
bamlift 0.3.0
Liftover positions in a BAM file4 versions - Latest release: almost 2 years ago - 1 dependent package - 4.94 thousand downloads total - 52 stars on GitHub - 1 maintainer
bam 0.1.4
Crate that allows to read and write BAM, SAM and BGZIP files, written completely in Rust.20 versions - Latest release: over 4 years ago - 5 dependent packages - 5 dependent repositories - 37.6 thousand downloads total - 9 stars on gitlab.com - 1 maintainer
fibertools-rs 0.6.4
Fiber-seq toolkit in rust52 versions - Latest release: 6 months ago - 63.9 thousand downloads total - 36 stars on GitHub - 1 maintainer
bamrescue 0.3.0
Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them3 versions - Latest release: about 3 years ago - 4.67 thousand downloads total - 8 stars on GitHub - 1 maintainer
bam2seq 0.1.2
Extract reads and reconstructed references from a .bam file using CIGAR and MD tags.3 versions - Latest release: almost 3 years ago - 3.56 thousand downloads total - 5 stars on GitHub - 1 maintainer
bamkit 0.2.0
bamkit: a simple program for bam file manipulation2 versions - Latest release: over 2 years ago - 2.43 thousand downloads total - 0 stars on GitHub - 1 maintainer
deepbiop-bam 0.1.15
Deep Learning Processing Library for Bam Format14 versions - Latest release: 6 months ago - 11.9 thousand downloads total - 2 stars on GitHub - 1 maintainer
cramino 0.9.0
A tool to quickly extract quality metrics from bam or cram files1 version - Latest release: almost 3 years ago - 1.51 thousand downloads total - 151 stars on GitHub - 1 maintainer
bam-builder 1.0.0
A library for easily building BAMs for testing.5 versions - Latest release: almost 2 years ago - 6.12 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 4.9% on crates.io
64 versions - Latest release: 8 months ago - 46 dependent packages - 54 dependent repositories - 446 thousand downloads total - 260 stars on GitHub - 1 maintainer
rust-htslib 0.49.0
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.64 versions - Latest release: 8 months ago - 46 dependent packages - 54 dependent repositories - 446 thousand downloads total - 260 stars on GitHub - 1 maintainer
extended-htslib 0.2.0
This library provides extended HTSlib bindings and a high level Rust API for reading and writing ...2 versions - Latest release: 5 months ago - 1.06 thousand downloads total - 1 maintainer
rustybam 0.1.34
bioinformatics toolkit in rust36 versions - Latest release: about 2 months ago - 43.3 thousand downloads total - 90 stars on GitHub - 1 maintainer
ambigviz 0.1.0
Identify and plot ambiguous nucleotide bases at given positions from a BAM file.1 version - Latest release: over 1 year ago - 1.32 thousand downloads total - 1 stars on GitHub - 1 maintainer
bamsalvage 0.1.3
Rust version of bamsalvage, retrieving sequences from a corrupted BAM file as much as possible.1 version - Latest release: over 2 years ago - 1.29 thousand downloads total - 1 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
13
sam
5
htslib
5
cli
4
pileup
4
sequencing
4
fasta
3
bfx
3
fastq
3
genomics
3
rust
2
alignment
2
cram
2
integrity
1
bam-files
1
corruption
1
rescue
1
hts
1
deep-learning
1
biological-data
1
bamsalvage
1
ont
1
pacbio
1
long-read
1
genomic
1
paf
1
biology
1
liftover
1
visualization
1
check
1
repair
1
bioinfo
1
bgzip
1
pyo3
1
k-mer
1
vcf
1
ngs
1
bcf
1
deduplication
1
barcodes
1
random
1
genome-analysis
1
downsample
1
subsampling
1
coverage
1