crates.io "fasta" keyword
View the packages on the crates.io package registry that are tagged with the "fasta" keyword.
rasusa 2.1.1
Randomly subsample reads or alignments15 versions - Latest release: 3 days ago - 15.9 thousand downloads total - 232 stars on GitHub - 1 maintainer
filterx 0.3.4
A command line tool to filter data by using python-like syntax17 versions - Latest release: 7 months ago - 11.4 thousand downloads total - 21 stars on GitHub - 1 maintainer
Top 8.9% on crates.io
14 versions - Latest release: 5 months ago - 23 dependent packages - 16 dependent repositories - 66.6 thousand downloads total - 68 stars on GitHub - 1 maintainer
seq_io 0.3.4
Fast FASTA and FASTQ readers14 versions - Latest release: 5 months ago - 23 dependent packages - 16 dependent repositories - 66.6 thousand downloads total - 68 stars on GitHub - 1 maintainer
filterx_source 0.3.4
The source library for filterx11 versions - Latest release: 7 months ago - 7.38 thousand downloads total - 21 stars on GitHub - 1 maintainer
merkurio 1.0.0
Quick k-mer-based FASTA/FASTQ sequence record extraction, and SAM/BAM record filtering plus file ...1 version - Latest release: 3 days ago - 0 downloads total - 2 stars on GitHub - 1 maintainer
syncmers 0.1.5
Rust library for finding syncmers5 versions - Latest release: over 2 years ago - 1 dependent package - 6.43 thousand downloads total - 6 stars on GitHub - 1 maintainer
seq_io_parallel 0.2.1
A map-reduce style parallel extension to seq_io8 versions - Latest release: 4 months ago - 4.22 thousand downloads total - 6 stars on GitHub - 1 maintainer
to-trans 0.2.0
A high-performance transcriptome builder from fasta + GTF/GFF2 versions - Latest release: over 1 year ago - 2.32 thousand downloads total - 2 stars on GitHub - 1 maintainer
tarnished 0.4.0
Very simple CLI app for testing the percent of nucleotides in FASTA files4 versions - Latest release: over 2 years ago - 4.41 thousand downloads total - 0 stars on GitHub - 1 maintainer
seqdupes 0.2.0
Compress sequence duplicates2 versions - Latest release: about 1 year ago - 2.25 thousand downloads total - 0 stars on GitHub - 1 maintainer
paraseq 0.3.8
A minimal-copy parser for FASTA and FASTQ files built for paired parallel processing.15 versions - Latest release: 6 days ago - 4.71 thousand downloads total - 20 stars on GitHub - 1 maintainer
thaf 0.0.3
Extracts transcript sequences and gene maps from genome FASTA files using GFF3 annotations.3 versions - Latest release: 6 days ago - 380 downloads total - 0 stars on GitHub - 1 maintainer
stats_on_gff3_ncbi 0.1.52
Calculate statistics such as CDS GC3 ratio, intron GC ratio, flanking gene region GC ratio, first...29 versions - Latest release: over 1 year ago - 32.4 thousand downloads total - 1 maintainer
seqtk-rs 0.2.0
This is a sequence processing tool written in Rust for manipulating FASTA/FASTQ files. Pure rust ...2 versions - Latest release: 7 days ago - 211 downloads total - 3 stars on GitHub - 1 maintainer
Top 7.8% on crates.io
18 versions - Latest release: 5 months ago - 40 dependent packages - 24 dependent repositories - 359 thousand downloads total - 126 stars on GitHub - 6 maintainers
needletail 0.6.3
FASTX parsing and k-mer methods18 versions - Latest release: 5 months ago - 40 dependent packages - 24 dependent repositories - 359 thousand downloads total - 126 stars on GitHub - 6 maintainers
psdm 0.3.0
Compute a pairwise SNP distance matrix from one or two alignment(s)3 versions - Latest release: about 1 year ago - 3.4 thousand downloads total - 25 stars on GitHub - 1 maintainer
fakit 0.4.0
fakit: a simple program for fasta file manipulation24 versions - Latest release: 9 days ago - 24 thousand downloads total - 1 stars on GitHub - 1 maintainer
fusta 1.7.1
FUSTA leverages the FUSE interface to transparently manipulate multiFASTA files as independent files3 versions - Latest release: over 2 years ago - 3.66 thousand downloads total - 17 stars on GitHub - 1 maintainer
kseq 0.5.3
a simple fasta/fastq format parser library21 versions - Latest release: over 1 year ago - 2 dependent repositories - 25.4 thousand downloads total - 20 stars on GitHub - 1 maintainer
deepbiop-fa 0.1.15
Deep Learning Preprocessing Library for Fastq Format4 versions - Latest release: 6 months ago - 2.52 thousand downloads total - 4 stars on GitHub - 1 maintainer
seqsample 0.2.0
Randomly sample sequences from a FASTA file2 versions - Latest release: over 2 years ago - 2.39 thousand downloads total - 0 stars on GitHub - 1 maintainer
minimap2-sys 0.1.23+minimap2.2.30
Bindings to libminimap222 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 35.5 thousand downloads total - 101 stars on GitHub - 1 maintainer
minimap2 0.1.27+minimap2.2.30
Bindings to libminimap223 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 27.9 thousand downloads total - 101 stars on GitHub - 1 maintainer
minimap2-temp 0.1.33+minimap2.2.28
Bindings to libminimap24 versions - Latest release: about 2 months ago - 3.03 thousand downloads total - 101 stars on GitHub - 1 maintainer
stats_on_genomes 0.1.1
Calculate 2 simple ratio on the whole genome: GC ratio and repetition ratio.2 versions - Latest release: over 1 year ago - 2.52 thousand downloads total - 1 maintainer
mmft 0.2.1
A minimal fasta toolkit.3 versions - Latest release: 8 months ago - 2.73 thousand downloads total - 6 stars on GitHub - 1 maintainer
stats_on_gff3 0.1.26
Calculate statistics such as CDS GC3 ratio, intron GC ratio, flanking gene region GC ratio, first...26 versions - Latest release: over 1 year ago - 27.3 thousand downloads total - 0 stars on gitlab.in2p3.fr - 1 maintainer
fasta_windows 0.2.4
Make quick statistics in windows from a fasta file.2 versions - Latest release: almost 3 years ago - 2.56 thousand downloads total - 15 stars on GitHub - 1 maintainer
fastleng 0.2.0
fastleng - read length statistics tool3 versions - Latest release: over 2 years ago - 3.62 thousand downloads total - 2 stars on GitHub - 1 maintainer
bio-streams 0.5.0
Streaming bioinformatics data types3 versions - Latest release: 10 months ago - 3.21 thousand downloads total - 6 stars on GitHub - 1 maintainer
miniprot-sys 0.1.0
Bindings to libminiprot1 version - Latest release: over 2 years ago - 1.39 thousand downloads total - 0 stars on GitHub - 1 maintainer
faimm 0.5.0
Random access to indexed fasta using a mmapped file6 versions - Latest release: over 1 year ago - 2 dependent packages - 2 dependent repositories - 11.9 thousand downloads total - 8 stars on GitHub - 1 maintainer
seqsplitter 0.1.4
Parses fasta records based on list of either header names or regexes5 versions - Latest release: almost 3 years ago - 5.51 thousand downloads total - 0 stars on GitHub - 1 maintainer
fastix 0.1.0
prefix renaming FASTA records1 version - Latest release: almost 2 years ago - 1.72 thousand downloads total - 17 stars on GitHub - 1 maintainer
fffx 0.1.3
Another fasta/q/x file format parser. Well fuzzed.4 versions - Latest release: about 2 years ago - 2 dependent packages - 1 dependent repositories - 9.19 thousand downloads total - 0 stars on GitHub - 1 maintainer
nexus2fa 0.0.1
converts .nex to .fa plain simple1 version - Latest release: 10 months ago - 950 downloads total - 0 stars on GitHub - 1 maintainer
filterx_core 0.3.4
The core library for filterx10 versions - Latest release: 7 months ago - 6.51 thousand downloads total - 21 stars on GitHub - 1 maintainer
faiquery 0.1.3
Queryable indexed fasta using a mmapped file4 versions - Latest release: almost 2 years ago - 2 dependent packages - 1 dependent repositories - 5.51 thousand downloads total - 0 stars on GitHub - 1 maintainer
sfasta 0.3.5
Better FASTA sequence compression and querying6 versions - Latest release: over 2 years ago - 6.51 thousand downloads total - 35 stars on GitHub - 1 maintainer
fxtools 0.2.39
A collection of commandline Fasta/Fastq utility tools38 versions - Latest release: 10 months ago - 37.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
libsfasta 0.3.4
Better FASTA sequence compression and querying2 versions - Latest release: over 2 years ago - 1 dependent package - 2.8 thousand downloads total - 35 stars on GitHub - 1 maintainer
fire-fasta 0.1.0
Ultra-fast, lazy, zero-copy Multi-FASTA parser.1 version - Latest release: 9 months ago - 845 downloads total - 0 stars on GitHub - 1 maintainer
bamsalvage 0.1.3
Rust version of bamsalvage, retrieving sequences from a corrupted BAM file as much as possible.1 version - Latest release: over 2 years ago - 1.29 thousand downloads total - 1 stars on GitHub - 1 maintainer
fastx 0.4.0
FastX reads Fasta and FastQ files with little overhead.6 versions - Latest release: about 2 months ago - 1 dependent package - 5.82 thousand downloads total - 2 stars on GitHub - 1 maintainer
chromsize 0.0.3
just get your chrom sizes3 versions - Latest release: 29 days ago - 1.84 thousand downloads total - 13 stars on GitHub - 1 maintainer
jean_io 0.1.0
I/O library feature for jean1 version - Latest release: over 2 years ago - 2 dependent packages - 1 dependent repositories - 2.27 thousand downloads total - 1 stars on GitHub - 1 maintainer
filterx_info 0.3.4
The builtin function documentation library for filterx8 versions - Latest release: 7 months ago - 4.95 thousand downloads total - 21 stars on GitHub - 1 maintainer
rust-gc-count 0.1.0
GC and sequence utilities1 version - Latest release: almost 2 years ago - 1.21 thousand downloads total - 2 stars on GitHub - 1 maintainer
fasta_split 0.1.3
Split a fasta file into several fasta files4 versions - Latest release: about 1 year ago - 3.72 thousand downloads total - 1 stars on GitHub - 1 maintainer
filterx_engine 0.3.4
The engine library for filterx10 versions - Latest release: 7 months ago - 6.11 thousand downloads total - 22 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
32
fastq
26
rust
9
gff3
9
alignment
6
genomics
6
gtf
6
sam
6
genome
5
seqkit
5
tsv
5
bio
5
ffi
4
compression
3
sequence
3
longread
3
parser
3
minimap2
3
sequence-alignment
3
spliced-alignment
3
bam
3
cli
2
indexed
2
fai
2
protein
2
sequencing
2
transcriptome
2
parallel
2
fastx
2
windows
1
long-read-sequencing
1
introns
1
Statistics
1
next-generation-sequencing
1
quality-metrics
1
cds gc3
1
coverage
1
phylogeny
1
nexus
1
indexed-fasta
1
query
1
toolkit
1
science
1
long-read
1
bamsalvage
1
chromosome
1
size
1
rna
1
dna
1
biology
1
computational-biology
1
genes
1
genetics
1
subsampling
1
downsample
1
genome-analysis
1
random
1
k-mer
1
syncmers
1
map-reduce
1
gff
1
nucleotide
1
tui
1
count
1
paired
1
ngs
1
kmer
1
matrix
1
pairwise
1
snp
1
distance
1
fa
1
fasta-format
1
fasta-parser
1
hts
1
fuse
1
deep-learning
1
parquet
1
biological-data
1
tools
1
GC
1