Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
juliahub.com "bioinformatics" keyword
Top 5.0% on juliahub.com
15 versions - Latest release: 4 months ago - 13 dependent packages - 480 stars on GitHub
Dash 1.5.0 💰
Dash for Julia - A Julia interface to the Dash ecosystem for creating analytic web applications i...15 versions - Latest release: 4 months ago - 13 dependent packages - 480 stars on GitHub
Bio 1.0.1
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia2 versions - Latest release: over 1 year ago - 8 dependent repositories - 257 stars on GitHub
Top 2.9% on juliahub.com
19 versions - Latest release: 7 months ago - 30 dependent packages - 51 dependent repositories - 141 stars on GitHub
BioSequences 3.1.6
Biological sequences for the julia language19 versions - Latest release: 7 months ago - 30 dependent packages - 51 dependent repositories - 141 stars on GitHub
Top 7.8% on juliahub.com
31 versions - Latest release: 4 months ago - 4 dependent packages - 8 dependent repositories - 77 stars on GitHub
BioStructures 3.0.0
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)31 versions - Latest release: 4 months ago - 4 dependent packages - 8 dependent repositories - 77 stars on GitHub
GeneticsMakie 0.2.1
🧬High-performance genetics- and genomics-related data visualization using Makie.jl8 versions - Latest release: about 2 months ago - 70 stars on GitHub
FlashWeave 0.19.2
Inference of microbial interaction networks from large-scale heterogeneous abundance data13 versions - Latest release: almost 1 year ago - 66 stars on GitHub
MIToS 2.15.0
Mutual Information Tools for protein Sequence analysis in Julia30 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 64 stars on GitHub
GenomeGraphs 0.2.0 💰
A modern genomics framework for julia2 versions - Latest release: over 1 year ago - 1 dependent package - 64 stars on GitHub
Top 6.4% on juliahub.com
8 versions - Latest release: over 1 year ago - 12 dependent packages - 13 dependent repositories - 56 stars on GitHub
BioAlignments 3.1.0 💰
Sequence alignment tools8 versions - Latest release: over 1 year ago - 12 dependent packages - 13 dependent repositories - 56 stars on GitHub
Pipelines 0.10.6
A lightweight and powerful Julia package for computational pipelines and workflows.53 versions - Latest release: 29 days ago - 1 dependent package - 43 stars on GitHub
GeneticVariation 0.4.1
Datastructures and algorithms for working with genetic variation2 versions - Latest release: about 1 year ago - 3 dependent packages - 8 dependent repositories - 36 stars on GitHub
Bio3DView 0.1.5
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab o...6 versions - Latest release: 10 months ago - 3 dependent packages - 32 stars on GitHub
Top 8.5% on juliahub.com
6 versions - Latest release: over 5 years ago - 14 dependent packages - 26 dependent repositories - 29 stars on GitHub
BioCore 2.0.5
Core types and interfaces for BioJulia packages6 versions - Latest release: over 5 years ago - 14 dependent packages - 26 dependent repositories - 29 stars on GitHub
Top 9.4% on juliahub.com
13 versions - Latest release: 12 months ago - 10 dependent packages - 12 dependent repositories - 28 stars on GitHub
BioSymbols 5.1.3
Nucleic and amino acid primitive types13 versions - Latest release: 12 months ago - 10 dependent packages - 12 dependent repositories - 28 stars on GitHub
XAM 0.4.0 💰
Parse and process SAM and BAM formatted files14 versions - Latest release: 3 months ago - 4 dependent packages - 23 stars on GitHub
PhyloTrees 0.11.1
Phylogenetic trees in Julia4 versions - Latest release: almost 4 years ago - 1 dependent package - 22 stars on GitHub
SubstitutionModels 0.5.0
Biological Sequence Substitution Models for Julia8 versions - Latest release: over 2 years ago - 1 dependent package - 16 stars on GitHub
FastaIO 1.0.2
Utilities to read/write FASTA format files in Julia5 versions - Latest release: 7 months ago - 6 dependent packages - 12 dependent repositories - 15 stars on GitHub
GeneFinder 0.3.0
A Gene Finder framework for Julia.23 versions - Latest release: about 1 month ago - 14 stars on GitHub
GenomicMaps 0.1.4
Julia package for visualising genomic data5 versions - Latest release: 4 months ago - 14 stars on GitHub
VariantCallFormat 0.5.6
Read and write VCF and BCF files7 versions - Latest release: about 1 month ago - 7 dependent packages - 12 stars on GitHub
Taxonomy 0.4.4
Julia package to handle the NCBI Taxonomy database.11 versions - Latest release: 9 months ago - 12 stars on GitHub
BGZFStreams 0.3.2 💰
BGZF Stream3 versions - Latest release: 10 months ago - 9 dependent packages - 13 dependent repositories - 12 stars on GitHub
GenomicAnnotations 0.3.7
18 versions - Latest release: about 2 months ago - 2 dependent packages - 3 dependent repositories - 11 stars on GitHubBioLab 0.13.1 💰
The nuclear package for various bioinformatics projects like GSEA.jl 🧬4 versions - Latest release: 9 months ago - 11 stars on GitHub
ReadDatastores 0.4.0 💰
Datastores for reads, not your papa's FASTQ files.5 versions - Latest release: over 1 year ago - 2 dependent packages - 10 stars on GitHub
BioGraph 0.1.2
A Julia package for handle genome graph in the GFA format.2 versions - Latest release: about 2 years ago - 10 stars on GitHub
GFF3 0.2.3 💰
6 versions - Latest release: 10 months ago - 9 stars on GitHubSeqShuffle 0.2.2
Shuffle the string sequences such that the k-mer frequency is preserved in each string4 versions - Latest release: 12 months ago - 3 dependent packages - 8 stars on GitHub
BurrowsWheelerAligner 0.1.3
Binding for bwa2 versions - Latest release: 2 months ago - 8 stars on GitHub
NewickTree 0.3.1
Newick formatted (phylogenetic) trees6 versions - Latest release: 3 months ago - 8 stars on GitHub
NormalizeQuantiles 1.2.2
NormalizeQuantiles.jl implements quantile normalization9 versions - Latest release: over 1 year ago - 7 stars on GitHub
MMTF 1.0.0
A julia package to parse and write MMTF file3 versions - Latest release: almost 3 years ago - 1 dependent package - 7 stars on GitHub
SimpleBio 0.3.0
Easy-to-use biological sequence tools working with DNA, RNA and aminoacid sequences.4 versions - Latest release: over 1 year ago - 7 stars on GitHub
MOTIFs 0.1.2
DNA Motif discovery that includes the discovery of flexible (long or gapped) motifs.3 versions - Latest release: 10 months ago - 7 stars on GitHub
BED 0.3.0 💰
5 versions - Latest release: about 2 years ago - 1 dependent package - 6 stars on GitHubKnockoffs 1.1.8
Variable Selection with Knockoffs13 versions - Latest release: 3 months ago - 6 stars on GitHub
GeneticBitArrays 0.3.2
BitArray representation of genetic sequences in Julia6 versions - Latest release: over 2 years ago - 1 dependent package - 5 stars on GitHub
BioRecordsProcessing 0.2.3
Process your biological records with ease5 versions - Latest release: 17 days ago - 5 stars on GitHub
BioMarkovChains 0.9.3
Representing biological sequences as Markov chains20 versions - Latest release: about 1 month ago - 5 stars on GitHub
MetaPhylo 0.1.1
Phylogenetic trees with metadata by Julia based on Graphs.jl and AbstractTrees.jl.2 versions - Latest release: over 1 year ago - 4 stars on GitHub
BioMart 0.1.1
Make simple requests to Ensembl BioMart database.1 version - Latest release: over 1 year ago - 4 stars on GitHub
BigWig 0.1.0 💰
1 version - Latest release: almost 4 years ago - 4 stars on GitHubBigBed 0.1.0 💰
1 version - Latest release: almost 4 years ago - 3 stars on GitHubMicrobiomeAnalysis 0.4.0
Functions and workflows for the analysis of microbiome data.4 versions - Latest release: almost 2 years ago - 3 stars on GitHub
BulkLMM 1.2.0
Linear mixed model genome scans for many traits6 versions - Latest release: 9 months ago - 3 stars on GitHub
MotifPvalue 0.1.0
Threshold and p-value computations for Position Weight Matrices1 version - Latest release: over 2 years ago - 2 stars on GitHub
BedgraphFiles 2.4.0
FileIO.jl integration for bedGraph files12 versions - Latest release: 5 days ago - 2 stars on GitHub
BioFindr 1.0.3
Fast Inference of Biological Networks from Directed Regulations (Findr) in Julia4 versions - Latest release: 13 days ago - 1 stars on GitHub
BioVossEncoder 0.4.0
A small Julia package to represent BioSequences as a Voss matrix4 versions - Latest release: 3 months ago - 1 stars on GitHub
GenLib 0.1.3
A pure Julia port of R's GENLIB genetics and genealogical library3 versions - Latest release: about 2 months ago - 1 stars on GitHub
sparseQFCA 1.9.0
Developed a registered Julia package which quantifies the redundancies in genome-scale metabolic ...13 versions - Latest release: 8 months ago - 1 stars on GitHub
BioSimplex 0.2.0
Representing BioSequences as Simplex numerical matrix2 versions - Latest release: 2 months ago - 0 stars on GitHub
Bedgraph 2.3.0
Read and write support for bedGraph file format.14 versions - Latest release: 4 days ago - 1 dependent package - 0 stars on GitHub
CDLmotif 0.1.0
Discover DNA sequence motifs using convolutional dictionary learning1 version - Latest release: over 1 year ago
Related Keywords
julia
32
biology
15
biojulia
10
genomics
9
dna
7
computational-biology
5
genetics
4
julia-language
4
pdb
3
protein-structure
3
structural-bioinformatics
3
phylogenetics
3
rna
3
motifs
3
sam-files
3
bam-files
3
dna-sequences
3
machine-learning
3
data-science
3
bam-format
2
julialang
2
biodiversity
2
regulatory-genomics
2
bedgraph
2
amino-acids
2
fasta
2
gff3
2
phylogeny
2
structural-biology
2
transcription-factor-binding-site
2
microbiome
2
statistics
1
microarray-data-analysis
1
normalise-quantiles
1
quantile-normalisation
1
newick-format
1
normalize-quantiles
1
evolutionary-biology
1
quantile-normalization
1
rcsb
1
mmtf
1
julia-package
1
representation-learning
1
machine-learning-algorithms
1
ai
1
bed-format
1
false-discovery-rate
1
dash
1
sam-file
1
storage
1
fastq
1
sam-bam
1
format
1
fastq-format
1
genome
1
files
1
graph-genome
1
gfa
1
gff3-files
1
gff3-format
1
protein-sequences
1
sequencing
1
genomics-data
1
shuffle
1
bioinformatics-data
1
fastq-files
1
fasta-sequences
1
bwa
1
tree-structure
1
conditional-independence
1
p-value
1
transcription-factor-binding
1
pwm
1
position-weight-matrix
1
motif
1
statistical-genetics
1
gene-expression
1
causal-inference
1
multi-omics
1
gene-network
1
gene-network-inference
1
encoding
1
wavelets
1
genealogy
1
pedigree
1
systems-biology
1
qfca
1
fca
1
gmt
1
convolutional-dictionary-learning
1
sequence-motifs
1
transcription-factors
1
dictionary-learning
1
dna-motifs
1
sequence-motif
1
gct
1
multiple-knockoffs
1
knockoff-filter
1
feature-selection
1
model-selection
1