Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
juliahub.com "biology" keyword
BioSimplex 0.2.0
Representing BioSequences as Simplex numerical matrix2 versions - Latest release: 2 months ago - 0 stars on GitHub
BioMarkovChains 0.9.3
Representing biological sequences as Markov chains20 versions - Latest release: about 1 month ago - 5 stars on GitHub
SequenceVariation 0.2.2
Biological sequence variation8 versions - Latest release: over 1 year ago - 1 dependent package - 8 stars on GitHub
ReadDatastores 0.4.0 💰
Datastores for reads, not your papa's FASTQ files.5 versions - Latest release: over 1 year ago - 2 dependent packages - 10 stars on GitHub
GenomicAnnotations 0.3.7
18 versions - Latest release: about 2 months ago - 2 dependent packages - 3 dependent repositories - 11 stars on GitHubGeneFinder 0.3.0
A Gene Finder framework for Julia.23 versions - Latest release: about 1 month ago - 14 stars on GitHub
GenomicMaps 0.1.4
Julia package for visualising genomic data5 versions - Latest release: 4 months ago - 14 stars on GitHub
ReactionNetworkImporters 0.14.1 💰
Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichio...26 versions - Latest release: 3 months ago - 25 stars on GitHub
TuringPatterns 0.7.0
Turing patterns simulation solver for the GeoStats.jl framework30 versions - Latest release: 6 months ago - 26 stars on GitHub
Top 9.4% on juliahub.com
13 versions - Latest release: 12 months ago - 10 dependent packages - 12 dependent repositories - 28 stars on GitHub
BioSymbols 5.1.3
Nucleic and amino acid primitive types13 versions - Latest release: 12 months ago - 10 dependent packages - 12 dependent repositories - 28 stars on GitHub
Top 8.5% on juliahub.com
6 versions - Latest release: over 5 years ago - 14 dependent packages - 26 dependent repositories - 29 stars on GitHub
BioCore 2.0.5
Core types and interfaces for BioJulia packages6 versions - Latest release: over 5 years ago - 14 dependent packages - 26 dependent repositories - 29 stars on GitHub
GeneticVariation 0.4.1
Datastructures and algorithms for working with genetic variation2 versions - Latest release: about 1 year ago - 3 dependent packages - 8 dependent repositories - 36 stars on GitHub
Microbiome 0.10.1
For analysis of microbiome and microbial community data26 versions - Latest release: 9 months ago - 2 dependent packages - 4 dependent repositories - 46 stars on GitHub
Top 6.4% on juliahub.com
8 versions - Latest release: over 1 year ago - 12 dependent packages - 13 dependent repositories - 56 stars on GitHub
BioAlignments 3.1.0 💰
Sequence alignment tools8 versions - Latest release: over 1 year ago - 12 dependent packages - 13 dependent repositories - 56 stars on GitHub
MIToS 2.15.0
Mutual Information Tools for protein Sequence analysis in Julia30 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 64 stars on GitHub
GenomeGraphs 0.2.0 💰
A modern genomics framework for julia2 versions - Latest release: over 1 year ago - 1 dependent package - 64 stars on GitHub
Top 7.8% on juliahub.com
31 versions - Latest release: 4 months ago - 4 dependent packages - 8 dependent repositories - 77 stars on GitHub
BioStructures 3.0.0
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)31 versions - Latest release: 4 months ago - 4 dependent packages - 8 dependent repositories - 77 stars on GitHub
Top 2.9% on juliahub.com
19 versions - Latest release: 7 months ago - 30 dependent packages - 51 dependent repositories - 141 stars on GitHub
BioSequences 3.1.6
Biological sequences for the julia language19 versions - Latest release: 7 months ago - 30 dependent packages - 51 dependent repositories - 141 stars on GitHub
Bio 1.0.1
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia2 versions - Latest release: over 1 year ago - 8 dependent repositories - 257 stars on GitHub
Top 4.9% on juliahub.com
72 versions - Latest release: 6 months ago - 16 dependent packages - 422 stars on GitHub
Catalyst 13.5.1 💰
Chemical reaction network and systems biology interface for scientific machine learning (SciML). ...72 versions - Latest release: 6 months ago - 16 dependent packages - 422 stars on GitHub
Top 6.9% on juliahub.com
32 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 422 stars on GitHub
DiffEqBiological 4.3.0 💰
Chemical reaction network and systems biology interface for scientific machine learning (SciML). ...32 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 422 stars on GitHub
Related Keywords
bioinformatics
15
julia
10
biojulia
8
gillespie-algorithm
3
differential-equations
3
chemical-reactions
3
genomics
3
protein-structure
2
pdb
2
structural-bioinformatics
2
sam-files
2
bam-files
2
julia-language
2
simulation
2
systems-biology-simulation
2
scientific-machine-learning
2
dna
2
sde
2
sciml
2
biological-sequences
2
reaction-network
2
rate-laws
2
dsl
2
systems-biology
2
ode
2
dna-sequences
1
smith-waterman-alignment
1
high-throughput-sequencing
1
pfam
1
proteins
1
sequence-analysis
1
multiple-sequence-alignment
1
sequence-alignment
1
sifts
1
ecology
1
microbiome
1
protein-evolution
1
coevolution
1
mutual-information
1
conservation
1
protein-sequence-analysis
1
bio
1
genome-sequencing
1
genome-assembly
1
genomes
1
genome-graph
1
bioinformatics-analysis
1
structural-biology
1
biojulia-packages
1
deprecated
1
genes
1
gff3
1
genome-annotation
1
bioinformatics-data
1
format
1
storage
1
files
1
sequencing
1
bam-format
1
genomics-data
1
fastq
1
fastq-files
1
fastq-format
1
sam-bam
1
sam-file
1
variant-calling
1
markov-chain
1
julialang
1
machine-learning
1
snps
1
variation
1
mutation
1
polymorphism
1
io
1
amino-acids
1
computational-biology
1
nucleotides
1
biological-data-analysis
1
nucleic-acids
1
geostatistics
1
texture-synthesis
1
chemical-kinetics
1
genomics-visualization
1
gene-finding
1
orf-search
1
gene
1
algorithms
1
genbank
1