Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "connectomics" keyword
Top 1.4% on pypi.org
27 versions - Latest release: 2 months ago - 46 dependent packages - 204 dependent repositories - 29.2 thousand downloads last month - 651 stars on GitHub - 4 maintainers
dipy 1.9.0
Diffusion MRI Imaging in Python27 versions - Latest release: 2 months ago - 46 dependent packages - 204 dependent repositories - 29.2 thousand downloads last month - 651 stars on GitHub - 4 maintainers
Top 6.6% on pypi.org
6 versions - Latest release: 3 months ago - 6 dependent packages - 10 dependent repositories - 624 downloads last month - 55 stars on GitHub - 4 maintainers
netneurotools 0.2.4
A toolbox for network neuroscience6 versions - Latest release: 3 months ago - 6 dependent packages - 10 dependent repositories - 624 downloads last month - 55 stars on GitHub - 4 maintainers
annotationframeworkclient 3.1.0
a service for interacting with the AnnotationFramework33 versions - Latest release: almost 3 years ago - 1 dependent package - 2 dependent repositories - 145 downloads last month - 19 stars on GitHub - 4 maintainers
Top 7.0% on pypi.org
79 versions - Latest release: 22 days ago - 9 dependent packages - 17 dependent repositories - 1.13 thousand downloads last month - 19 stars on GitHub - 3 maintainers
caveclient 5.21.0
A client for interacting with the Connectome Annotation Versioning Engine79 versions - Latest release: 22 days ago - 9 dependent packages - 17 dependent repositories - 1.13 thousand downloads last month - 19 stars on GitHub - 3 maintainers
compresso 3.3.0
compresso algorithm variant based on work by Matejek et al.14 versions - Latest release: about 2 months ago - 2 dependent packages - 9 dependent repositories - 3.44 thousand downloads last month - 4 stars on GitHub - 2 maintainers
ndexchange 1.0.10
Python 3 program to download data from NeuroData11 versions - Latest release: about 5 years ago - 1 dependent repositories - 11 downloads last month - 4 stars on GitHub - 2 maintainers
catpy 2020.9.3
Python client for the CATMAID API4 versions - Latest release: over 3 years ago - 2 dependent repositories - 66 downloads last month - 4 stars on GitHub - 2 maintainers
boss-ingest 0.12.0
Ingest client for the Boss17 versions - Latest release: about 3 years ago - 1 dependent repositories - 130 downloads last month - 5 stars on GitHub - 2 maintainers
Top 9.8% on pypi.org
24 versions - Latest release: about 1 year ago - 3 dependent packages - 11 dependent repositories - 213 downloads last month - 19 stars on GitHub - 2 maintainers
intern 1.4.1
Python SDK for interacting with neuroscience data via the Boss API.24 versions - Latest release: about 1 year ago - 3 dependent packages - 11 dependent repositories - 213 downloads last month - 19 stars on GitHub - 2 maintainers
contact-points 0.0.7
Find contact points in a 3D Volume.7 versions - Latest release: about 3 years ago - 1 dependent repositories - 29 downloads last month - 6 stars on GitHub - 2 maintainers
Top 6.0% on pypi.org
20 versions - Latest release: 7 months ago - 3 dependent packages - 7 dependent repositories - 1.57 thousand downloads last month - 55 stars on GitHub - 2 maintainers
zmesh 1.7.1
Multilabel marching cubes and simplification of volumetric data.20 versions - Latest release: 7 months ago - 3 dependent packages - 7 dependent repositories - 1.57 thousand downloads last month - 55 stars on GitHub - 2 maintainers
dotmotif 0.14.0
Find graph motifs using simple, intuitive notation.12 versions - Latest release: about 1 year ago - 1 dependent package - 2 dependent repositories - 677 downloads last month - 80 stars on GitHub - 1 maintainer
qsiprep-container 0.19.1
qsiprep is a non-DTI diffusion-weighted image pre-processing pipeline that is designed to provide...48 versions - Latest release: 8 months ago - 1 dependent repositories - 114 downloads last month - 128 stars on GitHub - 1 maintainer
Top 6.5% on pypi.org
56 versions - Latest release: 6 days ago - 2 dependent packages - 12 dependent repositories - 3.48 thousand downloads last month - 125 stars on GitHub - 1 maintainer
kimimaro 3.7.0
Skeletonize densely labeled image volumes.56 versions - Latest release: 6 days ago - 2 dependent packages - 12 dependent repositories - 3.48 thousand downloads last month - 125 stars on GitHub - 1 maintainer
connectome-interpreter 1.8.1
A tool for connectomics data interpretation30 versions - Latest release: 3 days ago - 1.26 thousand downloads last month - 0 stars on GitHub - 1 maintainer
diluvian 0.0.6
Flood filling networks for segmenting electron microscopy of neural tissue.6 versions - Latest release: over 6 years ago - 1 dependent repositories - 65 downloads last month - 23 stars on GitHub - 1 maintainer
feabas 2.1.0
A python library for stitching & alignment of connectome datasets using finite-element method.9 versions - Latest release: 3 months ago - 25 downloads last month - 9 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
60 versions - Latest release: 7 days ago - 22 dependent packages - 48 dependent repositories - 43.2 thousand downloads last month - 334 stars on GitHub - 1 maintainer
connected-components-3d 3.15.0
Connected components on discrete and continuous multilabel 3D and 2D images. Handles 26, 18, and ...60 versions - Latest release: 7 days ago - 22 dependent packages - 48 dependent repositories - 43.2 thousand downloads last month - 334 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
9 versions - Latest release: 3 months ago - 1 dependent package - 10 dependent repositories - 1.05 thousand downloads last month - 49 stars on GitHub - 1 maintainer
grandiso 2.2.0
Performant subgraph isomorphism9 versions - Latest release: 3 months ago - 1 dependent package - 10 dependent repositories - 1.05 thousand downloads last month - 49 stars on GitHub - 1 maintainer
Top 6.2% on pypi.org
8 versions - Latest release: about 1 month ago - 2 dependent packages - 5 dependent repositories - 902 downloads last month - 175 stars on GitHub - 1 maintainer
skeletor 1.3.0
Python 3 library to extract skeletons from 3D meshes8 versions - Latest release: about 1 month ago - 2 dependent packages - 5 dependent repositories - 902 downloads last month - 175 stars on GitHub - 1 maintainer
ndio 1.1.6
A Python library for open neuroscience data access and manipulation.53 versions - Latest release: over 7 years ago - 3 dependent repositories - 186 downloads last month - 18 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
61 versions - Latest release: 6 days ago - 1 dependent package - 1 dependent repositories - 560 downloads last month - 40 stars on GitHub - 1 maintainer
igneous-pipeline 4.23.0
Manage, Downsample, Mesh, Skeletonize, and Transform Neuroglancer Datasets61 versions - Latest release: 6 days ago - 1 dependent package - 1 dependent repositories - 560 downloads last month - 40 stars on GitHub - 1 maintainer
xs3d 1.7.0
Compute cross sectional area of 3d shapes.10 versions - Latest release: about 2 months ago - 2 dependent packages - 2.13 thousand downloads last month - 40 stars on GitHub - 1 maintainer
cits 1.3
CITS algorithm for inferring causality from time series data5 versions - Latest release: 5 months ago - 35 downloads last month - 2 stars on GitHub - 1 maintainer
poremks 1.0.7
for analytics on nanoporous molecular structures8 versions - Latest release: about 5 years ago - 1 dependent repositories - 85 downloads last month - 217 stars on GitHub - 1 maintainer
ocpy 0.5.3
Deprecated. Use ndio instead.10 versions - Latest release: over 8 years ago - 2 dependent repositories - 36 downloads last month - 1 maintainer
connectomics 0.0.1.dev4
Common repository for connectomics-related libraries.4 versions - Latest release: about 1 year ago - 1 dependent repositories - 210 downloads last month - 21 stars on GitHub - 1 maintainer
sofima 0.1
Scalable Optical Flow-based Image Montaging and Alignment1 version - Latest release: about 2 years ago - 1 dependent repositories - 9 downloads last month - 47 stars on GitHub - 1 maintainer
Top 6.8% on pypi.org
15 versions - Latest release: 5 months ago - 1 dependent package - 12 dependent repositories - 20.9 thousand downloads last month - 32 stars on GitHub - 1 maintainer
fpzip 1.2.3
Numpy wrapper for fpzip algorithm (P. Lindstrom & M. Isenburg, 2006)15 versions - Latest release: 5 months ago - 1 dependent package - 12 dependent repositories - 20.9 thousand downloads last month - 32 stars on GitHub - 1 maintainer
Top 4.0% on pypi.org
326 versions - Latest release: 7 days ago - 19 dependent packages - 45 dependent repositories - 4.61 thousand downloads last month - 121 stars on GitHub - 1 maintainer
cloud-volume 8.33.0
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on ...326 versions - Latest release: 7 days ago - 19 dependent packages - 45 dependent repositories - 4.61 thousand downloads last month - 121 stars on GitHub - 1 maintainer
qsiprep 0.19.1
qsiprep builds workflows for preprocessing and reconstructing q-space images50 versions - Latest release: 8 months ago - 1 dependent repositories - 309 downloads last month - 129 stars on GitHub - 1 maintainer
Top 3.7% on pypi.org
36 versions - Latest release: 3 months ago - 24 dependent packages - 42 dependent repositories - 11.5 thousand downloads last month - 217 stars on GitHub - 1 maintainer
edt 2.4.0
Multi-Label Anisotropic Euclidean Distance Transform 3D36 versions - Latest release: 3 months ago - 24 dependent packages - 42 dependent repositories - 11.5 thousand downloads last month - 217 stars on GitHub - 1 maintainer
catmaid-catnap 0.4.0
Experiments working with CATMAID and napari3 versions - Latest release: about 3 years ago - 1 dependent repositories - 40 downloads last month - 2 stars on GitHub - 1 maintainer
neuropull 0.2.0
A lightweight tool for pulling connectome networks and metadata.3 versions - Latest release: over 1 year ago - 25 downloads last month - 2 stars on GitHub - 1 maintainer
labelops 0.0.0
Operates on labeled neuronal meshes.1 version - Latest release: over 5 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 1 maintainer
fodnet 1.1.0
FOD-Net Reimplementation.2 versions - Latest release: 8 months ago - 19 downloads last month - 16 stars on GitHub - 1 maintainer
Related Keywords
python
15
neuroscience
9
biomedical-image-processing
8
numpy
7
volumetric-data
7
connectome
7
3d
6
brain
6
microscopy
6
2d
5
python3
5
image-processing
4
diffusion-mri
4
spatial
4
EM
4
calcium
4
skeletonization
4
algorithm
4
tractography
4
electron
3
electron-microscopy
3
database
3
boss
3
cloud
3
ccl
3
neuroglancer
3
cpp
3
meshing
3
teasar
2
connected-components
2
neurodata
2
neuro
2
1d
2
pipelines
2
vf2
2
subgraph-isomorphism
2
ocp.me
2
connected-components-labeling
2
docker
2
downsample
2
downsampling
2
dotmotif
2
bossdb
2
aplbrain
2
kubernetes
2
multi-resolution
2
network
2
graph
2
visualization
2
ocp
2
ocpy
2
neurodata.io
2
mesh
2
skeleton
2
meshes
2
skeletons
2
medical-imaging
2
neuroimaging
2
segmentation
2
signed-distance-functions
2
signed-distance-field
2
microns
2
anisotropic
2
anisotropy
2
distance-transform
2
euclidean-distance
2
compression
2
euclidean-distance-transform
2
marching-parabolas
2
parallel
2
surface-area
1
grand-graphs
1
periodic-boundary
1
grand-iso
1
graphs
1
path-compression
1
network-analysis
1
network-biology
1
ullman
1
contraction
1
extraction
1
neurons
1
skeleton-extraction
1
skeletonize
1
volumes
1
medicine
1
ndio
1
MRI
1
chunked-image
1
large-image
1
matrix
1
microscopy-images
1
serverless
1
tensor
1
image
1
connectomes
1
data
1
dataset
1
networks
1
networks-biology
1