pypi.org "biomedical-image-processing" keyword
View the packages on the pypi.org package registry that are tagged with the "biomedical-image-processing" keyword.
biapy 3.5.12
BiaPy: Bioimage analysis pipelines in Python43 versions - Latest release: 27 days ago - 2.03 thousand downloads last month - 76 stars on GitHub - 1 maintainer
wsipre 0.1.2
Whole-slide image preprocessing3 versions - Latest release: over 6 years ago - 1 dependent repositories - 130 downloads last month - 9 stars on GitHub - 1 maintainer
poremks 1.0.7
for analytics on nanoporous molecular structures8 versions - Latest release: about 6 years ago - 1 dependent repositories - 320 downloads last month - 217 stars on GitHub - 1 maintainer
Top 4.0% on pypi.org
351 versions - Latest release: 3 days ago - 19 dependent packages - 45 dependent repositories - 15.6 thousand downloads last month - 145 stars on GitHub - 1 maintainer
cloud-volume 12.2.0
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on ...351 versions - Latest release: 3 days ago - 19 dependent packages - 45 dependent repositories - 15.6 thousand downloads last month - 145 stars on GitHub - 1 maintainer
gandlf 0.1.2
PyTorch-based framework that handles segmentation/regression/classification using various DL arch...619 versions - Latest release: 5 months ago - 1 dependent repositories - 9.78 thousand downloads last month - 137 stars on GitHub - 2 maintainers
Top 5.3% on pypi.org
40 versions - Latest release: about 2 months ago - 23 dependent packages - 63 dependent repositories - 62.1 thousand downloads last month - 48 stars on GitHub - 1 maintainer
fastremap 1.15.1
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.40 versions - Latest release: about 2 months ago - 23 dependent packages - 63 dependent repositories - 62.1 thousand downloads last month - 48 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
69 versions - Latest release: about 2 months ago - 22 dependent packages - 48 dependent repositories - 226 thousand downloads last month - 410 stars on GitHub - 1 maintainer
connected-components-3d 3.23.0
Connected components on discrete and continuous multilabel 3D and 2D images. Handles 26, 18, and ...69 versions - Latest release: about 2 months ago - 22 dependent packages - 48 dependent repositories - 226 thousand downloads last month - 410 stars on GitHub - 1 maintainer
pathml 3.0.0
Tools for computational pathology17 versions - Latest release: 6 months ago - 1 dependent repositories - 697 downloads last month - 417 stars on GitHub - 3 maintainers
unet-torch 0.0.2 💰
unet - Pytorch2 versions - Latest release: over 1 year ago - 85 downloads last month - 8 stars on GitHub - 1 maintainer
tinybrain 1.7.0
Image pyramid generation specialized for connectomics data types and procedures.21 versions - Latest release: 2 months ago - 4 dependent packages - 7 dependent repositories - 5.09 thousand downloads last month - 9 stars on GitHub - 1 maintainer
Top 6.6% on pypi.org
26 versions - Latest release: 10 months ago - 2 dependent packages - 10 dependent repositories - 9.13 thousand downloads last month - 70 stars on GitHub - 1 maintainer
dijkstra3d 1.15.1
Implementation of Dijkstra's Shortest Path algorithm on 3D images.26 versions - Latest release: 10 months ago - 2 dependent packages - 10 dependent repositories - 9.13 thousand downloads last month - 70 stars on GitHub - 1 maintainer
napari-mm3 0.0.16
a plugin for mother machine image analysis12 versions - Latest release: 12 months ago - 1 dependent repositories - 329 downloads last month - 9 stars on GitHub - 2 maintainers
Top 3.7% on pypi.org
39 versions - Latest release: about 2 months ago - 24 dependent packages - 42 dependent repositories - 35.7 thousand downloads last month - 217 stars on GitHub - 1 maintainer
edt 3.0.0
Multi-Label Anisotropic Euclidean Distance Transform 3D39 versions - Latest release: about 2 months ago - 24 dependent packages - 42 dependent repositories - 35.7 thousand downloads last month - 217 stars on GitHub - 1 maintainer
sofima 0.1
Scalable Optical Flow-based Image Montaging and Alignment1 version - Latest release: about 3 years ago - 1 dependent repositories - 95 downloads last month - 68 stars on GitHub - 1 maintainer
Top 6.0% on pypi.org
21 versions - Latest release: 7 months ago - 3 dependent packages - 7 dependent repositories - 3.87 thousand downloads last month - 62 stars on GitHub - 2 maintainers
zmesh 1.8.0
Multilabel marching cubes and simplification of volumetric data.21 versions - Latest release: 7 months ago - 3 dependent packages - 7 dependent repositories - 3.87 thousand downloads last month - 62 stars on GitHub - 2 maintainers
microviewer 1.12.0
Visualize 3D numpy arrays in the browser.23 versions - Latest release: 22 days ago - 9.1 thousand downloads last month - 12 stars on GitHub - 1 maintainer
pyssam 0.2.3
A Python library for statistical modelling of biomedical shape and appearance3 versions - Latest release: 10 months ago - 115 downloads last month - 30 stars on GitHub - 1 maintainer
contact-points 0.0.7
Find contact points in a 3D Volume.7 versions - Latest release: about 4 years ago - 1 dependent repositories - 118 downloads last month - 6 stars on GitHub - 2 maintainers
elektronn3 0.1.1
Utilities for 3D CNNs in PyTorch2 versions - Latest release: almost 2 years ago - 1 dependent package - 2 dependent repositories - 87 downloads last month - 161 stars on GitHub - 1 maintainer
Top 6.5% on pypi.org
62 versions - Latest release: about 2 months ago - 2 dependent packages - 12 dependent repositories - 8.13 thousand downloads last month - 145 stars on GitHub - 1 maintainer
kimimaro 5.0.0
Skeletonize densely labeled image volumes.62 versions - Latest release: about 2 months ago - 2 dependent packages - 12 dependent repositories - 8.13 thousand downloads last month - 145 stars on GitHub - 1 maintainer
Related Keywords
python
13
connectomics
8
numpy
7
volumetric-data
6
2d
6
3d
6
image-processing
6
deep-learning
4
image-segmentation
4
cpp
4
pytorch
4
python3
3
algorithm
3
electron-microscopy
3
cython
3
machine-learning
3
microscopy
3
euclidean-distance
2
distance-transform
2
euclidean-distance-transform
2
marching-parabolas
2
anisotropy
2
anisotropic
2
neuroscience
2
parallel
2
signed-distance-field
2
signed-distance-functions
2
1d
2
connected-components
2
skeletons
2
classification
2
computer-vision
2
image
2
convolutional-neural-networks
2
semantic-segmentation
2
segmentation
2
skeletonization
2
medical-imaging
2
meshing
1
dijkstra-algorithm
1
image-pyramid
1
dijkstra
1
bidirectional-search
1
bidirectional-dijkstra
1
a-star-search
1
a-star-algorithm
1
a-star
1
3d-image-volumes
1
resize-images
1
image-pyramids
1
resize
1
mode-pooling
1
pathml
1
pathology
1
research
1
spatial-transcriptomics
1
artificial intelligence
1
deep learning
1
optimizers
1
Prompt Engineering
1
artificial-intelligence
1
biomedical
1
gpt4
1
image-classification
1
texttovide
1
unet
1
vllm
1
average-pooling
1
countless
1
downsample
1
image-hierarchy
1
3d-reconstruction
1
voxel-painting
1
biomedical-data-science
1
statistical-shape-model
1
contact-points
1
3d-cnn
1
3d-convolutional-network
1
teasar
1
centerline
1
medial-axis-transform
1
centerline-extraction
1
computer-vision-alogithms
1
voxel
1
computer-vision-algorithms
1
cross-section
1
cross-section-area
1
python2
1
dijkstra-shortest-path
1
path-planning
1
pathfinding
1
shortest-path
1
unidirectional-search
1
napari
1
napari-plugin
1
otsu-thresholding
1
unet-image-segmentation
1
4d
1
alignment-algorithm
1
jax
1