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pypi.org "neuroimaging" keyword

View the packages on the pypi.org package registry that are tagged with the "neuroimaging" keyword.

Top 3.9% on pypi.org
braindecode 0.8.1
Deep learning software to decode EEG, ECG or MEG signals
52 versions - Latest release: over 1 year ago - 2 dependent packages - 15 dependent repositories - 18.3 thousand downloads last month - 917 stars on GitHub - 3 maintainers
bimodneurocnn 0.1.0
Tools for bimodal training of CNNs, i.e. concurrent training with two data types
1 version - Latest release: over 4 years ago - 54 downloads last month - 917 stars on GitHub - 1 maintainer
fmristats 0.1.1
Modelling the data and not the images in FMRI
8 versions - Latest release: almost 6 years ago - 1 dependent repositories - 311 downloads last month - 1 maintainer
Top 6.7% on pypi.org
bidsschematools 1.0.5
Python tools for working with the BIDS schema.
25 versions - Latest release: 4 days ago - 3 dependent packages - 1 dependent repositories - 68.4 thousand downloads last month - 304 stars on GitHub - 3 maintainers
airflow-imaging-plugins 2.4.3
Airflow plugins to support Neuroimaging tasks.
43 versions - Latest release: over 7 years ago - 1 dependent repositories - 1.02 thousand downloads last month - 15 stars on GitHub - 2 maintainers
Top 1.0% on pypi.org
mne 1.9.0
MNE-Python project for MEG and EEG data analysis.
80 versions - Latest release: 4 months ago - 149 dependent packages - 646 dependent repositories - 183 thousand downloads last month - 2,907 stars on GitHub - 2 maintainers
niseq 0.0.2
Group sequential tests for neuroimaging
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 208 downloads last month - 8 stars on GitHub - 1 maintainer
Top 0.5% on pypi.org
nibabel 5.3.2
Access a multitude of neuroimaging data formats
45 versions - Latest release: 6 months ago - 390 dependent packages - 3,394 dependent repositories - 815 thousand downloads last month - 650 stars on GitHub - 2 maintainers
actflow 0.3.4
The Brain Activity Flow (Actflow) Toolbox. Tools to quantify the relationship between connectivit...
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 436 downloads last month - 38 stars on GitHub - 3 maintainers
Top 1.4% on pypi.org
dipy 1.11.0
Diffusion MRI Imaging in Python
29 versions - Latest release: about 1 month ago - 46 dependent packages - 204 dependent repositories - 36.3 thousand downloads last month - 750 stars on GitHub - 4 maintainers
nondefaced-detector 0.1.3
A package to detect if an MRI Volume has been defaced.
4 versions - Latest release: about 4 years ago - 1 dependent repositories - 108 downloads last month - 6 stars on GitHub - 1 maintainer
neurocaps 1.0.0
Co-activation Patterns (CAPs) Python package
176 versions - Latest release: 10 months ago - 5.58 thousand downloads last month - 6 stars on GitHub - 1 maintainer
Top 0.7% on pypi.org
nipype 1.10.0
Neuroimaging in Python: Pipelines and Interfaces
68 versions - Latest release: about 1 month ago - 45 dependent packages - 1,107 dependent repositories - 354 thousand downloads last month - 735 stars on GitHub - 4 maintainers
Top 6.3% on pypi.org
templateflow 24.2.2
TemplateFlow Python Client - TemplateFlow is the Zone of neuroimaging templates.
49 versions - Latest release: 7 months ago - 17 dependent packages - 31 dependent repositories - 14.2 thousand downloads last month - 75 stars on GitHub - 4 maintainers
xnat4tests 0.3.12
Creates basic XNAT instance for API tests
23 versions - Latest release: 6 months ago - 3 dependent packages - 1 dependent repositories - 659 downloads last month - 5 stars on GitHub - 1 maintainer
bxl 0.3.4
Basic library for interacting with the REST interface of XNAT.
10 versions - Latest release: almost 6 years ago - 405 downloads last month - 1 maintainer
mne-faster 1.2.2
MNE-FASTER: automatic bad channel/epoch/component detection
5 versions - Latest release: 2 months ago - 367 downloads last month - 21 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
brainiak 0.9.1
Brain Imaging Analysis Kit
20 versions - Latest release: over 5 years ago - 5 dependent repositories - 2.25 thousand downloads last month - 322 stars on GitHub - 3 maintainers
freesurfer-surface 2.0.0
Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format
10 versions - Latest release: almost 4 years ago - 3 dependent repositories - 449 downloads last month - 9 stars on GitHub - 1 maintainer
bidskit 2025.1.30 💰
BIDS curation toolkit
33 versions - Latest release: 2 months ago - 1 dependent repositories - 1.31 thousand downloads last month - 62 stars on GitHub - 1 maintainer
nqdc 0.0.3
Download neuroimaging articles and extract text and stereotactic coordinates.
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 165 downloads last month - 0 stars on GitHub - 1 maintainer
brainview 0.0.1 💰
Visualize morphometry neuroimaging data on 3D brain meshes.
1 version - Latest release: over 6 years ago - 1 dependent repositories - 51 downloads last month - 4 stars on GitHub - 1 maintainer
fmripreprocessing 0.1.0
1 version - Latest release: about 1 year ago - 41 downloads last month - 1 maintainer
scdn 0.0.2
Estimating high dimensional ODE models from convoluted observations with an application to fMRI
3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 130 downloads last month - 3 stars on GitHub - 1 maintainer
bsl 0.6.4
Real-time framework for online neuroscience research through LSL-compatible devices.
15 versions - Latest release: over 1 year ago - 717 downloads last month - 0 stars on GitHub - 1 maintainer
pydfc 1.0.4
This package aims to provide a comprehensive framework for assessing dynamic functional connectiv...
1 version - Latest release: about 1 year ago - 1 dependent package - 209 downloads last month - 2 maintainers
pathmatcher 1.8.8
Regular Expression Path Matcher - Easily batch manipulate folders and files trees with regular ex...
10 versions - Latest release: 3 months ago - 1 dependent repositories - 383 downloads last month - 4 stars on GitHub - 1 maintainer
Top 9.7% on pypi.org
datalad-neuroimaging 0.3.6
DataLad extension package for neuro/medical imaging
23 versions - Latest release: 4 months ago - 2 dependent repositories - 953 downloads last month - 17 stars on GitHub - 3 maintainers
dyneusr-fire 0.0.3
A command line interface for DyNeuSR
2 versions - Latest release: almost 6 years ago - 1 dependent repositories - 87 downloads last month - 2 stars on GitHub - 1 maintainer
medimages4tests 0.5.7
Generates dummy medical image data with realistic headers to be used in image handling tests
17 versions - Latest release: 3 days ago - 9 dependent packages - 1 dependent repositories - 4.39 thousand downloads last month - 0 stars on GitHub - 1 maintainer
neurocombat 0.2.12
ComBat algorithm for harmonizing multi-site imaging data
15 versions - Latest release: almost 4 years ago - 1 dependent repositories - 821 downloads last month - 100 stars on GitHub - 1 maintainer
itk-skullstripping 0.1.0
Automatic skull-stripping for neuroimage analysis
2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 366 downloads last month - 13 stars on GitHub - 2 maintainers
neuroprep 0.2.0
2 versions - Latest release: about 1 year ago - 100 downloads last month - 1 maintainer
easylearn 0.1.20a0
This project is designed for machine learning in resting-state fMRI field
17 versions - Latest release: over 4 years ago - 1 dependent repositories - 609 downloads last month - 37 stars on GitHub - 1 maintainer
alcoholic-tfe22540 0.1.12
Framework of my master thesis on the effect of withdrawal on the white matter of alcoholic patien...
9 versions - Latest release: almost 2 years ago - 263 downloads last month - 0 stars on GitHub - 1 maintainer
cubids-bond-fork 0.1.0
BIDS On Disk Editor
1 version - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 57 downloads last month - 25 stars on GitHub - 1 maintainer
d2b 1.4.2
Organize data in the BIDS format
21 versions - Latest release: over 2 years ago - 6 dependent repositories - 579 downloads last month - 0 stars on GitHub - 1 maintainer
compare-variance-residual 0.0.3
Code for the bachelor thesis of Leo Schultheiss
3 versions - Latest release: 3 months ago - 161 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
bdpy 0.25.1
Brain decoder toolbox for Python
23 versions - Latest release: 6 months ago - 4 dependent repositories - 780 downloads last month - 31 stars on GitHub - 1 maintainer
psychopykit 2023.8.17 💰
Psychopy output conversion utilities
3 versions - Latest release: over 1 year ago - 146 downloads last month - 1 maintainer
lesion-metrics 0.1.12
metrics for evaluating lesion segmentations
13 versions - Latest release: about 3 years ago - 1 dependent repositories - 562 downloads last month - 2 stars on GitHub - 1 maintainer
brainweb 1.6.2 💰
BrainWeb-based multimodal models of 20 normal brains
18 versions - Latest release: over 4 years ago - 1 dependent package - 3 dependent repositories - 659 downloads last month - 27 stars on GitHub - 1 maintainer
clinica-pydra-fsl 0.1.0
Pydra tasks for FSL designed for Clinica
1 version - Latest release: 12 months ago - 59 downloads last month - 3 stars on GitHub - 3 maintainers
mne-nirs 0.7.1
An MNE compatible package for processing near-infrared spectroscopy data
18 versions - Latest release: 8 months ago - 1 dependent repositories - 2.21 thousand downloads last month - 92 stars on GitHub - 2 maintainers
bjdata 0.4.1
Binary JData and UBJSON encoder/decoder
11 versions - Latest release: over 1 year ago - 1 dependent repositories - 455 downloads last month - 2 stars on GitHub - 1 maintainer
Top 3.4% on pypi.org
mne-bids 0.16.0
MNE-BIDS: Organizing MEG, EEG, and iEEG data according to the BIDS specification and facilitating...
18 versions - Latest release: 5 months ago - 11 dependent packages - 50 dependent repositories - 20.3 thousand downloads last month - 145 stars on GitHub - 3 maintainers
django-mri 0.0.4
A reusable Django app to manage MRI data.
4 versions - Latest release: over 5 years ago - 1 dependent repositories - 186 downloads last month - 8 stars on GitHub - 1 maintainer
django-dicom 0.0.4
A simple Django app to manage DICOM files.
4 versions - Latest release: over 5 years ago - 1 dependent repositories - 202 downloads last month - 6 stars on GitHub - 1 maintainer
curryreader 0.1.0
File reader for Compumedics Neuroscan data formats (.cdt, .dat).
1 version - Latest release: 5 days ago
Top 2.7% on pypi.org
pydra 0.16.2
Pydra dataflow engine
40 versions - Latest release: almost 4 years ago - 27 dependent packages - 16 dependent repositories - 6.81 thousand downloads last month - 125 stars on GitHub - 6 maintainers
nibabies-wrapper 99.99.99
A wrapper for generating Docker and Apptainer/Singularity commands for simpler NiBabies usage
33 versions - Latest release: over 3 years ago - 1 dependent repositories - 813 downloads last month - 29 stars on GitHub - 2 maintainers
nibabies 25.0.1
Processing workflows for magnetic resonance images of the brain in infants
32 versions - Latest release: 2 months ago - 1 dependent repositories - 839 downloads last month - 29 stars on GitHub - 3 maintainers
Top 4.9% on pypi.org
nimare 0.4.2
NiMARE: Neuroimaging Meta-Analysis Research Environment
54 versions - Latest release: about 1 month ago - 5 dependent packages - 11 dependent repositories - 2.55 thousand downloads last month - 189 stars on GitHub - 4 maintainers
Top 3.7% on pypi.org
tedana 24.0.2
TE-Dependent Analysis (tedana) of multi-echo functional magnetic resonance imaging (fMRI) data.
24 versions - Latest release: 7 months ago - 2 dependent packages - 13 dependent repositories - 3.24 thousand downloads last month - 168 stars on GitHub - 3 maintainers
visualqc 0.6.6
Assistive tool for the quality control of neuroimaging data
30 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 1.03 thousand downloads last month - 73 stars on GitHub - 1 maintainer
neurograph 3.0.0
12 versions - Latest release: about 1 year ago - 303 downloads last month - 1 maintainer
findviz 0.1.4
FIND Viewer: FMRI Interactive Navigation and Discovery Viewer
4 versions - Latest release: 7 days ago - 350 downloads last month - 1 stars on GitHub - 1 maintainer
ciftify 2.3.3
The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
3 versions - Latest release: over 4 years ago - 169 downloads last month - 120 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
neuromaps 0.0.5
A toolbox for projecting, resampling, and comparing brain maps
5 versions - Latest release: about 1 year ago - 3 dependent packages - 1 dependent repositories - 4.97 thousand downloads last month - 266 stars on GitHub - 4 maintainers
Top 7.8% on pypi.org
mriqc 24.0.2
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and ...
117 versions - Latest release: 8 months ago - 2 dependent repositories - 1.76 thousand downloads last month - 316 stars on GitHub - 5 maintainers
dds4xnat 0.1
Renames the scan type for MR sessions stored on XNAT using the DeepDicomSort algorithm
1 version - Latest release: almost 3 years ago - 57 downloads last month - 0 stars on GitHub - 1 maintainer
surface-spaces 0.1.0
Convenient conversion between surface spaces.
1 version - Latest release: over 2 years ago - 66 downloads last month - 0 stars on GitHub - 1 maintainer
reprostim 0.7.9
ReproStim is a video capture and recording suite for neuroimaging and psychology experiments.
11 versions - Latest release: about 1 month ago - 337 downloads last month - 5 stars on GitHub - 2 maintainers
hiwenet 0.4.5
Histogram-weighted Networks for Feature Extraction and Advance Analysis in Neuroscience
7 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 707 downloads last month - 8 stars on GitHub - 1 maintainer
memori 0.3.6
A python library for creating memoized data and code for neuroimaging pipelines
19 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 656 downloads last month - 0 stars on GitHub - 1 maintainer
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data
13 versions - Latest release: about 2 years ago - 2 dependent packages - 2 dependent repositories - 498 downloads last month - 22 stars on GitHub - 1 maintainer
pybasc 0.6.1
Bootstrap Analysis for Stable Clustering in Python
5 versions - Latest release: over 5 years ago - 1 dependent repositories - 211 downloads last month - 26 stars on GitHub - 1 maintainer
sihnpy 0.4.1
Study of inter-individual heterogeneity of neuroimaging in Python (SIHNpy)
6 versions - Latest release: almost 2 years ago - 191 downloads last month - 1 stars on GitHub - 1 maintainer
dyconnmap 1.0.4
A dynamic connectome mapping module in Python
4 versions - Latest release: about 4 years ago - 1 dependent repositories - 189 downloads last month - 103 stars on GitHub - 1 maintainer
confounds 0.1.3
Conquering confounds and covariates in machine learning
6 versions - Latest release: about 3 years ago - 1 dependent package - 1 dependent repositories - 244 downloads last month - 38 stars on GitHub - 1 maintainer
hidimstat 0.2.0
High-dimensional statistical inference tools for Python
4 versions - Latest release: 7 months ago - 1 dependent repositories - 188 downloads last month - 1,258 stars on GitHub - 2 maintainers
fids 0.1.0
fake bids dataset generator
1 version - Latest release: 12 months ago - 1.44 thousand downloads last month - 1,258 stars on GitHub - 3 maintainers
nii-plot 1.0.0 💰
Plot mean NIfTI timeseries
2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 81 downloads last month - 0 stars on GitHub - 1 maintainer
nipype-generate-fieldmaps 0.2.4 💰
Nipype workflow to generate fieldmaps from EPI acquisitions with differing phase-encoding directions
6 versions - Latest release: about 3 years ago - 1 dependent repositories - 199 downloads last month - 1 stars on GitHub - 1 maintainer
nii-info 1.0.1 💰
Display NIfTI image information in a tabular format
3 versions - Latest release: almost 3 years ago - 1 dependent repositories - 109 downloads last month - 0 stars on GitHub - 1 maintainer
warpkit 0.1.1
A python library for neuroimaging transformations
3 versions - Latest release: over 1 year ago - 931 downloads last month - 8 stars on GitHub - 1 maintainer
nii2png 0.3.0 💰
A lightweight neuroimaging .nii to .png converter
2 versions - Latest release: almost 6 years ago - 1 dependent repositories - 152 downloads last month - 122 stars on GitHub - 1 maintainer
pubget 0.0.8
Download neuroimaging articles and extract text and stereotactic coordinates.
6 versions - Latest release: almost 2 years ago - 216 downloads last month - 23 stars on GitHub - 1 maintainer
nppy 0.2.1
Neural Pre-Processing: A Learning Framework for End-to-end Brain MRI Pre-processing.
4 versions - Latest release: over 1 year ago - 62 downloads last month - 26 stars on GitHub - 1 maintainer
cubids 1.2.0
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
11 versions - Latest release: about 2 months ago - 288 downloads last month - 25 stars on GitHub - 2 maintainers
rust-dtw 0.1.14 💰
A rust implementation of dynamic time warping with python bindings!
4 versions - Latest release: over 3 years ago - 1 dependent repositories - 426 downloads last month - 25 stars on GitHub - 1 maintainer
nidmviewer 0.1.3 💰
command line or server tool to view or compare nidm results.
3 versions - Latest release: almost 9 years ago - 2 dependent repositories - 74 downloads last month - 3 stars on GitHub - 1 maintainer
dstrf 0.2
MEG/EEG source localization tool
2 versions - Latest release: over 5 years ago - 1 dependent repositories - 78 downloads last month - 2 stars on GitHub - 1 maintainer
bidsmreye 0.5.0
bids app using deepMReye to decode eye motion for fMRI time series data
6 versions - Latest release: 8 months ago - 247 downloads last month - 7 stars on GitHub - 1 maintainer
Top 5.6% on pypi.org
pycortex 1.2.11
Python Cortical mapping software for fMRI data
16 versions - Latest release: 2 months ago - 1 dependent package - 7 dependent repositories - 865 downloads last month - 585 stars on GitHub - 2 maintainers
Top 7.0% on pypi.org
pynv 0.1.1
A Python library for interfacing with http://neurovault.org upload API
4 versions - Latest release: almost 8 years ago - 1 dependent package - 9 dependent repositories - 2.95 thousand downloads last month - 18 stars on GitHub - 2 maintainers
eeg-to-fmri 0.0.9
EEG to fMRI Synthesis - on a new EEG view
9 versions - Latest release: over 2 years ago - 291 downloads last month - 2 stars on GitHub - 1 maintainer
niphlem 0.0.3
Physiological Log Extraction for Modelling in Neuroimaging
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 88 downloads last month - 3 stars on GitHub - 1 maintainer
neuropreprocessing 0.1.0
1 version - Latest release: about 1 year ago - 48 downloads last month - 1 maintainer
pipetography 0.3.12
Pre/Post-processing pipeline for tractography wrapped around nipype and mrtrix3
19 versions - Latest release: over 3 years ago - 1 dependent repositories - 401 downloads last month - 4 stars on GitHub - 2 maintainers
kymata 1.0.2
Core Kymata codebase, including statistical analysis and plotting tools
4 versions - Latest release: 6 months ago - 171 downloads last month - 5 stars on GitHub - 2 maintainers
clinicadl 1.6.1
Framework for the reproducible processing of neuroimaging data with deep learning methods
33 versions - Latest release: about 1 year ago - 1 dependent repositories - 748 downloads last month - 152 stars on GitHub - 4 maintainers
nanslice 1.0.0
Scripts to slice and display neuroimages (probably stored in nifti format)
3 versions - Latest release: about 5 years ago - 1 dependent repositories - 128 downloads last month - 39 stars on GitHub - 1 maintainer
neuropower 0.2.8
A package to perform power analyses for neuroimaging data
9 versions - Latest release: over 8 years ago - 3 dependent repositories - 224 downloads last month - 12 stars on GitHub - 2 maintainers
Top 6.8% on pypi.org
dcm2bids 3.2.0
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
25 versions - Latest release: 9 months ago - 7 dependent repositories - 2.73 thousand downloads last month - 173 stars on GitHub - 2 maintainers
opmqc 0.1.2
TestDemo-Python project for uploading to pypi.
1 version - Latest release: over 1 year ago - 45 downloads last month - 1 maintainer
qipype 3.2
nipype interfaces to QUantitative Imaging Tools
3 versions - Latest release: about 4 years ago - 1 dependent repositories - 71 downloads last month - 62 stars on GitHub - 1 maintainer
graynet 0.5.6
Individualized single-subject networks from T1 mri features such as cortical thickness and gray m...
21 versions - Latest release: about 2 years ago - 1 dependent repositories - 597 downloads last month - 34 stars on GitHub - 1 maintainer
nibetaseries 0.6.0
BetaSeries Correlations implemented in Nipype
20 versions - Latest release: about 5 years ago - 1 dependent repositories - 472 downloads last month - 33 stars on GitHub - 1 maintainer
pycrostates 0.6.1
A simple open source Python package for EEG microstate segmentation.
10 versions - Latest release: 9 months ago - 606 downloads last month - 39 stars on GitHub - 2 maintainers