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pypi.org "neuroimaging" keyword

clinica-pydra-ants 0.1.1
Pydra tasks for ANTs designed for Clinica
2 versions - Latest release: 1 day ago - 210 downloads last month - 0 stars on GitHub - 2 maintainers
Top 1.0% on pypi.org
mne 1.7.0
MNE-Python project for MEG and EEG data analysis.
77 versions - Latest release: 8 days ago - 124 dependent packages - 646 dependent repositories - 110 thousand downloads last month - 2,511 stars on GitHub - 3 maintainers
pybicpl 0.5.1
Python interface for basic MNI .obj file format. Supports read, write, and calculations on a vert...
10 versions - Latest release: over 1 year ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 2 maintainers
Top 8.7% on pypi.org
bidscoin 4.3.2
Converts and organises raw MRI data-sets according to the Brain Imaging Data Structure (BIDS)
34 versions - Latest release: 29 days ago - 2 dependent repositories - 499 downloads last month - 117 stars on GitHub - 1 maintainer
pycivet 0.1.2
Object-oriented CIVET bindings for Python
22 versions - Latest release: over 1 year ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 2 maintainers
Top 4.6% on pypi.org
fmriprep 23.2.1
A robust and easy-to-use pipeline for preprocessing of diverse fMRI data
180 versions - Latest release: about 2 months ago - 11 dependent repositories - 2.77 thousand downloads last month - 600 stars on GitHub - 5 maintainers
Top 2.7% on pypi.org
pydra 0.16.2
Pydra dataflow engine
37 versions - Latest release: almost 3 years ago - 16 dependent packages - 16 dependent repositories - 2.5 thousand downloads last month - 118 stars on GitHub - 7 maintainers
Top 5.3% on pypi.org
fsleyes 1.11.0
FSLeyes, the FSL image viewer
113 versions - Latest release: 4 days ago - 1 dependent package - 4 dependent repositories - 1.02 thousand downloads last month - 806 stars on GitHub - 2 maintainers
Top 6.3% on pypi.org
templateflow 24.2.0
TemplateFlow Python Client - TemplateFlow is the Zone of neuroimaging templates.
47 versions - Latest release: about 1 month ago - 16 dependent packages - 31 dependent repositories - 24.3 thousand downloads last month - 70 stars on GitHub - 4 maintainers
Top 4.6% on pypi.org
nltools 0.5.1
A Python package to analyze neuroimaging data
41 versions - Latest release: about 1 month ago - 2 dependent packages - 13 dependent repositories - 2.25 thousand downloads last month - 120 stars on GitHub - 4 maintainers
Top 7.0% on pypi.org
pynv 0.1.1
A Python library for interfacing with http://neurovault.org upload API
4 versions - Latest release: almost 7 years ago - 1 dependent package - 9 dependent repositories - 2.46 thousand downloads last month - 18 stars on GitHub - 4 maintainers
Top 3.4% on pypi.org
mne-bids 0.11.1
MNE-BIDS: Organizing MEG, EEG, and iEEG data according to the BIDS specification and facilitating...
16 versions - Latest release: over 1 year ago - 9 dependent packages - 50 dependent repositories - 15.6 thousand downloads last month - 118 stars on GitHub - 3 maintainers
p3proc 0.1.2
The p3 fmri processing pipeline
2 versions - Latest release: over 5 years ago - 1 dependent repositories - 29 downloads last month - 0 stars on GitHub - 4 maintainers
Top 2.7% on pypi.org
bids-validator 1.14.5
Validator for the Brain Imaging Data Structure
82 versions - Latest release: 22 days ago - 4 dependent packages - 87 dependent repositories - 31.1 thousand downloads last month - 176 stars on GitHub - 4 maintainers
itk-skullstripping 0.1.0
Automatic skull-stripping for neuroimage analysis
2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 135 downloads last month - 11 stars on GitHub - 4 maintainers
Top 5.6% on pypi.org
pycortex 1.2.8
Python Cortical mapping software for fMRI data
13 versions - Latest release: about 22 hours ago - 1 dependent package - 7 dependent repositories - 362 downloads last month - 555 stars on GitHub - 2 maintainers
roicat 1.1.38
A library for classifying and tracking ROIs.
37 versions - Latest release: 15 days ago - 2 dependent repositories - 384 downloads last month - 9 stars on GitHub - 4 maintainers
graynet 0.5.6
Individualized single-subject networks from T1 mri features such as cortical thickness and gray m...
21 versions - Latest release: about 1 year ago - 1 dependent repositories - 164 downloads last month - 34 stars on GitHub - 1 maintainer
nisnap 0.4.1
nisnap
17 versions - Latest release: 9 months ago - 1 dependent package - 1 dependent repositories - 98 downloads last month - 8 stars on GitHub - 4 maintainers
react-fmri 0.1.7
A Python package that implements REACT: Receptor-Enriched Analysis of Functional Connectivity by ...
10 versions - Latest release: almost 2 years ago - 1 dependent repositories - 67 downloads last month - 11 stars on GitHub - 4 maintainers
Top 9.3% on pypi.org
clinica 0.8.1
Software platform for clinical neuroimaging studies
38 versions - Latest release: 3 days ago - 1 dependent package - 1 dependent repositories - 439 downloads last month - 211 stars on GitHub - 4 maintainers
Top 9.6% on pypi.org
bdpy 0.21.1
Brain decoder toolbox for Python
16 versions - Latest release: 5 months ago - 4 dependent repositories - 180 downloads last month - 31 stars on GitHub - 1 maintainer
clinicadl 1.6.1
Framework for the reproducible processing of neuroimaging data with deep learning methods
33 versions - Latest release: 22 days ago - 1 dependent repositories - 389 downloads last month - 151 stars on GitHub - 4 maintainers
nigsp 0.19.0
A python library (and toolbox!) to run Graph Signal Processing on multimodal MRI data.
32 versions - Latest release: 3 days ago - 1 dependent repositories - 245 downloads last month - 15 stars on GitHub - 1 maintainer
Top 1.4% on pypi.org
dipy 1.9.0
Diffusion MRI Imaging in Python
27 versions - Latest release: about 2 months ago - 38 dependent packages - 204 dependent repositories - 27.7 thousand downloads last month - 651 stars on GitHub - 4 maintainers
Top 0.7% on pypi.org
nipype 1.8.6
Neuroimaging in Python: Pipelines and Interfaces
64 versions - Latest release: about 1 year ago - 43 dependent packages - 1,107 dependent repositories - 149 thousand downloads last month - 731 stars on GitHub - 4 maintainers
Top 0.5% on pypi.org
nibabel 5.2.1
Access a multitude of neuroimaging data formats
42 versions - Latest release: 2 months ago - 284 dependent packages - 3,394 dependent repositories - 485 thousand downloads last month - 604 stars on GitHub - 2 maintainers
Top 5.0% on pypi.org
fitz 0.0.1.dev1
Fitz: Workflow Mangement for neuroimaging data.
3 versions - Latest release: 8 months ago - 54 dependent packages - 934 dependent repositories - 101 thousand downloads last month - 12 stars on GitHub - 2 maintainers
Top 3.7% on pypi.org
tedana 24.0.0
TE-Dependent Analysis (tedana) of multi-echo functional magnetic resonance imaging (fMRI) data.
22 versions - Latest release: about 1 month ago - 2 dependent packages - 13 dependent repositories - 3.03 thousand downloads last month - 156 stars on GitHub - 6 maintainers
fsl-sub-plugin-slurm 1.6.2
FSL Cluster Submission Plugin for Slurm
4 versions - Latest release: 3 months ago - 59 downloads last month - 2 maintainers
fsl-sub-plugin-sge 1.5.5
FSL Cluster Submission Plugin for Son of/Univa Grid Engine
2 versions - Latest release: about 2 months ago - 62 downloads last month - 2 maintainers
fsl-sub 2.8.3
FSL Cluster Submission Script
3 versions - Latest release: about 1 year ago - 3 dependent packages - 103 downloads last month - 2 maintainers
hypercoil 0.1.0.dev1
Differentiable programming for neuroimaging analysis
1 version - Latest release: 9 months ago - 2 dependent packages - 1 dependent repositories - 6 downloads last month - 4 stars on GitHub - 2 maintainers
face-rhythm 0.2.5
A pipeline for analysis of facial behavior using optical flow
10 versions - Latest release: 3 days ago - 134 downloads last month - 3 stars on GitHub - 2 maintainers
Top 9.0% on pypi.org
neuroquery 1.0.4
Meta-analysis of neuroimaging studies.
5 versions - Latest release: 10 months ago - 1 dependent package - 4 dependent repositories - 88 downloads last month - 30 stars on GitHub - 1 maintainer
niseq 0.0.2
Group sequential tests for neuroimaging
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 23 downloads last month - 8 stars on GitHub - 2 maintainers
Top 7.2% on pypi.org
nobrainer 1.2.1
A framework for developing neural network models for 3D image processing.
18 versions - Latest release: 24 days ago - 1 dependent package - 4 dependent repositories - 185 downloads last month - 138 stars on GitHub - 6 maintainers
pipetography 0.3.12
Pre/Post-processing pipeline for tractography wrapped around nipype and mrtrix3
19 versions - Latest release: over 2 years ago - 1 dependent repositories - 149 downloads last month - 4 stars on GitHub - 4 maintainers
nanslice 1.0.0
Scripts to slice and display neuroimages (probably stored in nifti format)
3 versions - Latest release: about 4 years ago - 1 dependent repositories - 28 downloads last month - 39 stars on GitHub - 2 maintainers
psychopykit 2023.8.17 💰
Psychopy output conversion utilities
3 versions - Latest release: 8 months ago - 29 downloads last month - 2 maintainers
neurocaps 0.8.8
Co-activation patterns Python package
7 versions - Latest release: about 1 month ago - 194 downloads last month - 0 stars on GitHub - 2 maintainers
visualqc 0.6.6
Assistive tool for the quality control of neuroimaging data
30 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 272 downloads last month - 72 stars on GitHub - 2 maintainers
Top 10.0% on pypi.org
snakebids 0.12.0
BIDS integration into snakemake workflows
39 versions - Latest release: 8 days ago - 2 dependent packages - 14 dependent repositories - 1.75 thousand downloads last month - 15 stars on GitHub - 2 maintainers
alcoholic-tfe22540 0.1.12
Framework of my master thesis on the effect of withdrawal on the white matter of alcoholic patien...
9 versions - Latest release: 9 months ago - 36 downloads last month - 0 stars on GitHub - 1 maintainer
nitrain 0.3.0
Cloud-based framework for training and sharing medical imaging AI models
4 versions - Latest release: 3 days ago - 240 downloads last month - 1,844 stars on GitHub - 2 maintainers
qipype 3.2
nipype interfaces to QUantitative Imaging Tools
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 12 downloads last month - 55 stars on GitHub - 2 maintainers
niatlas 0.0.1
atlas classes and methods for neuroimaging
1 version - Latest release: almost 5 years ago - 1 dependent repositories - 17 downloads last month - 2 stars on GitHub - 2 maintainers
medimages4tests 0.3.3
Generates dummy medical image data with realistic headers to be used in image handling tests
6 versions - Latest release: 6 months ago - 8 dependent packages - 1 dependent repositories - 1.25 thousand downloads last month - 0 stars on GitHub - 1 maintainer
mne-nirs 0.6.0
An MNE compatible package for processing near-infrared spectroscopy data.
16 versions - Latest release: 5 months ago - 1 dependent repositories - 370 downloads last month - 72 stars on GitHub - 4 maintainers
pycrostates 0.5.0
A simple open source Python package for EEG microstate segmentation.
8 versions - Latest release: 2 months ago - 124 downloads last month - 33 stars on GitHub - 4 maintainers
dyconnmap 1.0.4
A dynamic connectome mapping module in Python
4 versions - Latest release: about 3 years ago - 1 dependent repositories - 32 downloads last month - 96 stars on GitHub - 2 maintainers
brainview 0.0.1 💰
Visualize morphometry neuroimaging data on 3D brain meshes.
1 version - Latest release: over 5 years ago - 1 dependent repositories - 15 downloads last month - 4 stars on GitHub - 2 maintainers
mne-lsl 1.3.1
Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compa...
6 versions - Latest release: 24 days ago - 1 dependent package - 1.19 thousand downloads last month - 45 stars on GitHub - 6 maintainers
ascnii 0.0.1.dev21
View brain images in terminal using ASCII characters
12 versions - Latest release: 4 days ago - 90 downloads last month - 5 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
neuromaps 0.0.5
A toolbox for projecting, resampling, and comparing brain maps
5 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 307 downloads last month - 208 stars on GitHub - 5 maintainers
nidmviewer 0.1.3 💰
command line or server tool to view or compare nidm results.
3 versions - Latest release: almost 8 years ago - 2 dependent repositories - 10 downloads last month - 3 stars on GitHub - 2 maintainers
bids2table 0.1.0b0
Efficiently index large-scale BIDS datasets and derivatives
2 versions - Latest release: 2 months ago - 1 dependent repositories - 164 downloads last month - 11 stars on GitHub - 2 maintainers
nii-plot 1.0.0 💰
Plot mean NIfTI timeseries
2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
Top 2.3% on pypi.org
pybids 0.16.4
bids: interface with datasets conforming to BIDS
48 versions - Latest release: 5 months ago - 40 dependent packages - 163 dependent repositories - 29.4 thousand downloads last month - 211 stars on GitHub - 3 maintainers
freesurfer-surface 2.0.0
Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format
10 versions - Latest release: almost 3 years ago - 3 dependent repositories - 122 downloads last month - 8 stars on GitHub - 2 maintainers
Top 7.1% on pypi.org
pydra-dcm2niix 1.2.1
Provides a task interface for the popular dcm2niix DICOM to NIfTI converter
6 versions - Latest release: 10 months ago - 3 dependent packages - 2 dependent repositories - 770 downloads last month - 805 stars on GitHub - 4 maintainers
Top 2.5% on pypi.org
fslpy 3.18.2
FSL Python library
115 versions - Latest release: 24 days ago - 9 dependent packages - 18 dependent repositories - 4.1 thousand downloads last month - 805 stars on GitHub - 2 maintainers
Top 4.4% on pypi.org
dcm2niix 1.0.20220715
DCM2NIIX Python package
2 versions - Latest release: almost 2 years ago - 8 dependent packages - 3 dependent repositories - 4.48 thousand downloads last month - 805 stars on GitHub - 2 maintainers
pydcm2niix 1.0.20220116
DCM2NIIX Python package
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 16 downloads last month - 805 stars on GitHub - 1 maintainer
freesurfer-volume-reader 2.1.1
Python script & library to read hippocampal subfield volumescomputed by Freesurfer & ASHS
8 versions - Latest release: almost 3 years ago - 1 dependent repositories - 85 downloads last month - 4 stars on GitHub - 2 maintainers
pyrobex 0.4.3
python bindings for ROBEX brain extraction
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 4 stars on GitHub - 1 maintainer
cdn-fmri 0.0.2
Implementations of Causal Dynamic Network Analysis of fMRI
3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 22 downloads last month - 12 stars on GitHub - 2 maintainers
neuropredict 0.6.2
easy and standardized predictive analysis for biomarkers, neuroimaging, and beyond
18 versions - Latest release: about 1 year ago - 1 dependent repositories - 87 downloads last month - 99 stars on GitHub - 2 maintainers
mrdataset 0.4.4
MRdataset
7 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 235 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
brainstat 0.4.2
A toolbox for statistical analysis of neuroimaging data
17 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 558 downloads last month - 61 stars on GitHub - 4 maintainers
neurocombat 0.2.12
ComBat algorithm for harmonizing multi-site imaging data
15 versions - Latest release: almost 3 years ago - 1 dependent repositories - 374 downloads last month - 96 stars on GitHub - 2 maintainers
dyneusr 0.3.11
Dynamical Neural Spatiotemporal Representations.
12 versions - Latest release: almost 2 years ago - 3 dependent repositories - 85 downloads last month - 42 stars on GitHub - 2 maintainers
nii-info 1.0.1 💰
Display NIfTI image information in a tabular format
3 versions - Latest release: almost 2 years ago - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 2 maintainers
airflow-imaging-plugins 2.4.3
Airflow plugins to support Neuroimaging tasks.
43 versions - Latest release: over 6 years ago - 1 dependent repositories - 151 downloads last month - 15 stars on GitHub - 2 maintainers
nisupply 2023.3.10
A python module for dealing with unstructured or semi-structured neuroimaging datasets which do n...
3 versions - Latest release: about 1 year ago - 93 downloads last month - 2 stars on GitHub - 2 maintainers
nilearn-extra 0.1.1
Drop-in extra functionalities for nilearn (statistics for neuroimaging in Python)
2 versions - Latest release: almost 2 years ago - 16 downloads last month - 1 stars on GitHub - 2 maintainers
simplebrainviewer 0.3.2
A simple brain viewer using matplotlib
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 1 maintainer
neuropreprocessing 0.1.0
1 version - Latest release: 3 months ago - 12 downloads last month - 2 maintainers
confounds 0.1.3
Conquering confounds and covariates in machine learning
6 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 68 downloads last month - 38 stars on GitHub - 2 maintainers
mne-rsa 0.9
Code for performing Representational Similarity Analysis on MNE-Python data structures.
6 versions - Latest release: 7 months ago - 1 dependent repositories - 52 downloads last month - 50 stars on GitHub - 2 maintainers
fmripreprocessing 0.1.0
1 version - Latest release: 3 months ago - 4 downloads last month - 1 maintainer
brainsimulator 0.5.4
Nuclear brain imaging synthesis with python
4 versions - Latest release: over 6 years ago - 14 downloads last month - 0 stars on GitHub - 2 maintainers
neuro-tools 0.1.1
Neuroimaging tools to help with BIDS, XNAT, workflows, etc.
2 versions - Latest release: over 5 years ago - 1 dependent repositories - 20 downloads last month - 0 stars on GitHub - 2 maintainers
neuroprep 0.2.0
2 versions - Latest release: 3 months ago - 14 downloads last month - 2 maintainers
iptk 0.5.1
Python interface to the Imaging Pipeline Toolkit
9 versions - Latest release: almost 6 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 2 maintainers
Top 9.7% on pypi.org
datalad-neuroimaging 0.3.5
DataLad extension package for neuro/medical imaging
22 versions - Latest release: about 1 month ago - 2 dependent repositories - 696 downloads last month - 17 stars on GitHub - 6 maintainers
Top 9.3% on pypi.org
brainiak 0.9.1
Brain Imaging Analysis Kit
14 versions - Latest release: over 4 years ago - 5 dependent repositories - 97 downloads last month - 322 stars on GitHub - 8 maintainers
Top 7.8% on pypi.org
mriqc 24.0.0
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and ...
114 versions - Latest release: 10 days ago - 2 dependent repositories - 982 downloads last month - 275 stars on GitHub - 10 maintainers
frat-brain 1.6.4
Application for ROI fMRI data analysis.
36 versions - Latest release: about 2 months ago - 156 downloads last month - 11 stars on GitHub - 1 maintainer
lesion-metrics 0.1.12
metrics for evaluating lesion segmentations
13 versions - Latest release: over 2 years ago - 1 dependent repositories - 78 downloads last month - 2 stars on GitHub - 2 maintainers
Top 5.3% on pypi.org
fmriprep-docker 23.2.1
A wrapper for generating Docker commands using regular fMRIPrep syntax
166 versions - Latest release: about 2 months ago - 1 dependent package - 9 dependent repositories - 1.29 thousand downloads last month - 600 stars on GitHub - 5 maintainers
nibabies 23.1.0
Processing workflows for magnetic resonance images of the brain in infants
25 versions - Latest release: 5 months ago - 1 dependent repositories - 32 downloads last month - 19 stars on GitHub - 3 maintainers
nibabies-wrapper 99.99.99
A wrapper for generating Docker and Apptainer/Singularity commands for simpler NiBabies usage
26 versions - Latest release: over 2 years ago - 1 dependent repositories - 28 downloads last month - 19 stars on GitHub - 2 maintainers
imaging-transcriptomics 1.1.11
A package to perform imaging transcriptomics analysis on a neuroimaging brain scan.
16 versions - Latest release: about 1 year ago - 1 dependent repositories - 118 downloads last month - 14 stars on GitHub - 1 maintainer
nobrainer-zoo 0.2.0
A framework for inference and re-training of pretrained neuroimaging models
1 version - Latest release: over 1 year ago - 6 downloads last month - 8 stars on GitHub - 2 maintainers
dmipy 1.0.5
dmipy: diffusion microstructure imaging in python
4 versions - Latest release: over 3 years ago - 3 dependent repositories - 78 downloads last month - 92 stars on GitHub - 4 maintainers
nibetaseries 0.6.0
BetaSeries Correlations implemented in Nipype
20 versions - Latest release: about 4 years ago - 1 dependent repositories - 80 downloads last month - 29 stars on GitHub - 2 maintainers
pystorm3 0.1.6
Python implementation of some Brainstorm functions
7 versions - Latest release: 10 days ago - 457 downloads last month - 1 stars on GitHub - 2 maintainers
qmvpa 0.54
my MVPA package
9 versions - Latest release: over 5 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 2 maintainers
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data
13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 100 downloads last month - 22 stars on GitHub - 2 maintainers
Related Keywords
neuroscience 74 python 66 fmri 37 mri 37 brain 36 bids 27 nifti 20 machine-learning 19 brain-imaging 16 eeg 15 statistics 12 fsl 11 dicom 11 meg 11 MRI 10 electroencephalography 9 mri-images 9 MEG 9 EEG 9 machine learning 9 freesurfer 9 medical-imaging 9 surface 8 research 7 nii 7 bids-format 7 python3 7 pydra 7 dcm2niix 7 deep-learning 7 visualization 7 magnetoencephalography 7 hacktoberfest 6 meta-analysis 6 dcm 6 nilearn 6 quality-control 6 cortex 6 dicom-images 5 brainweb 5 image-processing 5 gz 5 fMRI 5 jpeg 5 pet 5 jpeg-image 5 deep learning 5 BIDS 5 mricrogl 5 nifti-format 5 electrocorticography 5 nitrc 5 registration 5 dti 5 nibabel 4 analysis 4 d2b 4 plugin 4 nipype 4 Neuroimaging 4 neuroinformatics 4 workflows 4 tool 4 scikit-learn 4 segmentation 4 cli 4 pytorch 4 imaging 4 fmri-preprocessing 4 ants 4 preprocessing 4 brain-networks 3 science 3 spm 3 normalization 3 harmonization 3 neuroimaging-analysis 3 data-standards 3 combat 3 skull-stripping 3 tractography 3 brain-extraction 3 deeplearning 3 vertex 3 reader 3 voxel 3 mesh 3 diffusion-mri 3 repository 3 parcellation 3 FSL 3 cluster 3 grid 3 slurm 3 brain-connectivity 3 fmri-data-analysis 3 ecog 3 DICOM 3 ECoG 3 nipy 3