pypi.org "structural-biology" keyword
View the packages on the pypi.org package registry that are tagged with the "structural-biology" keyword.
Top 9.4% on pypi.org
11 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 364 downloads last month - 1,006 stars on GitHub - 1 maintainer
molecularnodes 4.2.12
Toolbox for molecular animations with Blender and Geometry Nodes.11 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 364 downloads last month - 1,006 stars on GitHub - 1 maintainer
scipion-em-spoc 1.0.6
Plugin to use SPOC programs within the Scipion framework7 versions - Latest release: almost 3 years ago - 1 dependent repositories - 188 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-embuild 1.0.4
EMBuild: Model building of protein complexes from intermediate-resolution cryo-EM maps with deep ...5 versions - Latest release: about 2 years ago - 50 downloads last month - 1 maintainer
mdahole2 0.5.0
A Python interface for the HOLE suite tools to analyze an ion channel pore or transporter pathway...2 versions - Latest release: 5 months ago - 15.3 thousand downloads last month - 6 stars on GitHub - 1 maintainer
scipion-em-cryoef 3.0.15
Plugin to use Cryoef program within the Scipion framework16 versions - Latest release: over 1 year ago - 1 dependent repositories - 358 downloads last month - 0 stars on GitHub - 3 maintainers
scipion-em-resmap 3.0.3
Plugin to use ResMap program within the Scipion framework12 versions - Latest release: over 3 years ago - 1 dependent repositories - 331 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-sidesplitter 3.0.12
Plugin to use SIDESPLITTER program within the Scipion framework13 versions - Latest release: over 1 year ago - 1 dependent repositories - 298 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-susantomo 3.0b4
Plugin to use SUSAN within the Scipion framework4 versions - Latest release: about 1 year ago - 136 downloads last month - 2 stars on GitHub - 2 maintainers
py-packman 1.4.13
A software package for molecular PACKing and Motion ANalysis (PACKMAN)38 versions - Latest release: 10 months ago - 1 dependent repositories - 1.1 thousand downloads last month - 35 stars on GitHub - 1 maintainer
locuaz 0.7.5
Antibody optimization protocol34 versions - Latest release: over 1 year ago - 1.12 thousand downloads last month - 50 stars on GitHub - 1 maintainer
lxtractor 0.1.7
Feature extraction library for sequences and structures14 versions - Latest release: 13 days ago - 1 dependent package - 525 downloads last month - 1 stars on GitHub - 1 maintainer
rafm 1.1.4
rafm10 versions - Latest release: about 3 years ago - 1 dependent repositories - 281 downloads last month - 2 stars on GitHub - 1 maintainer
pdb-tools-removed-atom-limit 2.4.5
A swiss army knife for PDB files, customized to avoid the original atom limit.1 version - Latest release: almost 3 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-cryoassess 3.1.1
Plugin to use cryoassess within the Scipion framework10 versions - Latest release: over 2 years ago - 1 dependent repositories - 313 downloads last month - 0 stars on GitHub - 2 maintainers
proteofav 0.2.3
PROtein Feature Aggregation and Variants.3 versions - Latest release: over 7 years ago - 1 dependent repositories - 72 downloads last month - 3 stars on GitHub - 1 maintainer
rnaglib 3.4.2
RNAglib: Tools for learning on the structure of RNA using 2.5D geometric representations84 versions - Latest release: 4 days ago - 1 dependent repositories - 3.13 thousand downloads last month - 12 stars on GitHub - 2 maintainers
scipion-em-sphire 3.2.3
Plugin to use Sphire programs within the Scipion framework39 versions - Latest release: 5 months ago - 1 dependent repositories - 717 downloads last month - 0 stars on GitHub - 2 maintainers
leopard-em 0.0.5a0
Location & Orientation of Particles using Two-Dimensional Template Matching4 versions - Latest release: 26 days ago - 425 downloads last month - 4 stars on GitHub - 1 maintainer
mmcif-gen 1.0.5
CLI tool for creating mmCIF files from various facility data sources5 versions - Latest release: 3 months ago - 198 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-bsoft 3.0.6
Plugin to use Cryoef program within the Scipion framework11 versions - Latest release: about 3 years ago - 1 dependent repositories - 296 downloads last month - 2 stars on GitHub - 1 maintainer
deeprank2 3.1.0
DeepRank2 is an open-source deep learning framework for data mining of protein-protein interfaces...10 versions - Latest release: 7 months ago - 423 downloads last month - 49 stars on GitHub - 1 maintainer
scipion-em-dynamo 3.3.0
Plugin to use DYNAMO within the Scipion framework25 versions - Latest release: 5 months ago - 1 dependent repositories - 529 downloads last month - 1 stars on GitHub - 1 maintainer
Top 5.7% on pypi.org
31 versions - Latest release: 7 months ago - 1 dependent package - 3 dependent repositories - 1.73 thousand downloads last month - 927 stars on GitHub - 1 maintainer
graphein 1.7.7 💰
Protein & Interactomic Graph Construction for Machine Learning31 versions - Latest release: 7 months ago - 1 dependent package - 3 dependent repositories - 1.73 thousand downloads last month - 927 stars on GitHub - 1 maintainer
squarna 2.0.0
SQUARNA tool for RNA secondary structure prediction5 versions - Latest release: 5 days ago - 64 downloads last month - 14 stars on GitHub - 1 maintainer
Top 2.5% on pypi.org
52 versions - Latest release: 26 days ago - 44 dependent packages - 37 dependent repositories - 95.4 thousand downloads last month - 212 stars on GitHub - 1 maintainer
gemmi 0.7.1
library for structural biology52 versions - Latest release: 26 days ago - 44 dependent packages - 37 dependent repositories - 95.4 thousand downloads last month - 212 stars on GitHub - 1 maintainer
emtools 0.1.3
Utilities for CryoEM data manipulation14 versions - Latest release: 5 months ago - 1 dependent package - 820 downloads last month - 5 stars on GitHub - 1 maintainer
emcore 0.0.5
Python module to access functionality in the emcore library2 versions - Latest release: about 5 years ago - 1 dependent repositories - 101 downloads last month - 4 stars on GitHub - 1 maintainer
mdciao 1.0.0
mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data14 versions - Latest release: about 1 month ago - 1 dependent repositories - 485 downloads last month - 32 stars on GitHub - 1 maintainer
scipion-em-emready 3.1.1
EMReady: Improvement of cryo-EM maps by simultaneous local and non-local deep learning4 versions - Latest release: 6 months ago - 135 downloads last month - 6 stars on GitHub - 1 maintainer
scipion-em-sll 0.0.1
Scipion plugin for CryoEM tools developed at SciLifeLab1 version - Latest release: almost 6 years ago - 1 dependent repositories - 23 downloads last month - 1 maintainer
protein-cluster-conformers 1.2.1
Clusters conformations of monomeric protein3 versions - Latest release: 6 months ago - 170 downloads last month - 13 stars on GitHub - 1 maintainer
candiy-lemon 0.3.0
Mine data from the PDB in minutes3 versions - Latest release: almost 5 years ago - 1 dependent repositories - 413 downloads last month - 53 stars on GitHub - 1 maintainer
pycapsid 0.5.9
A set of computational tools written in python for the analysis of viral capsids54 versions - Latest release: over 1 year ago - 1.2 thousand downloads last month - 5 stars on GitHub - 2 maintainers
isambard 2.3.1
A package for biomolecular analysis, modelling and design3 versions - Latest release: about 4 years ago - 2 dependent repositories - 97 downloads last month - 22 stars on GitHub - 3 maintainers
scipion-em-imod 3.6.1
Plugin to use some of the Tomography tools from IMOD in Scipion31 versions - Latest release: 5 months ago - 3 dependent packages - 2 dependent repositories - 544 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-facilities 3.2.0
Plugin to use Scipion in facilities12 versions - Latest release: about 1 month ago - 1 dependent repositories - 455 downloads last month - 0 stars on GitHub - 1 maintainer
pdbsearch 0.4.0 💰
A library for searching for PDB structures using the official APIs.4 versions - Latest release: over 2 years ago - 1 dependent repositories - 108 downloads last month - 2 stars on GitHub - 1 maintainer
loco-hd 0.1.4
Implementation of the LoCoHD metric for quantitative protein structure and substructure comparison4 versions - Latest release: about 1 year ago - 183 downloads last month - 12 stars on GitHub - 1 maintainer
scipion-em-atsas 3.0.2
Plugin to use ATSAS programs within the Scipion framework11 versions - Latest release: over 4 years ago - 1 dependent repositories - 147 downloads last month - 0 stars on GitHub - 1 maintainer
serd 0.1.2
A Python package to detect solvent-exposed residues of a target biomolecule.3 versions - Latest release: over 2 years ago - 1 dependent repositories - 252 downloads last month - 5 stars on GitHub - 1 maintainer
Top 2.2% on pypi.org
60 versions - Latest release: about 1 month ago - 18 dependent packages - 22 dependent repositories - 1.32 million downloads last month - 784 stars on GitHub - 2 maintainers
biotite 1.2.0
A comprehensive library for computational molecular biology60 versions - Latest release: about 1 month ago - 18 dependent packages - 22 dependent repositories - 1.32 million downloads last month - 784 stars on GitHub - 2 maintainers
Top 5.5% on pypi.org
31 versions - Latest release: over 3 years ago - 1 dependent package - 7 dependent repositories - 1.5 thousand downloads last month - 105 stars on GitHub - 1 maintainer
atomium 1.0.11 💰
A molecular modeller and file parser.31 versions - Latest release: over 3 years ago - 1 dependent package - 7 dependent repositories - 1.5 thousand downloads last month - 105 stars on GitHub - 1 maintainer
hydroid 0.0.9
HYDROID (HYDroxyl-Radical fOotprinting Interpretation for DNA) is a python package for the analys...1 version - Latest release: over 7 years ago - 1 dependent repositories - 39 downloads last month - 9 stars on GitHub - 1 maintainer
scipion-em-imagic 3.0.13
Plugin to use IMAGIC programs within the Scipion framework15 versions - Latest release: over 1 year ago - 1 dependent repositories - 241 downloads last month - 0 stars on GitHub - 3 maintainers
scipion-em-relion 5.0.2
Plugin to use Relion programs within the Scipion framework72 versions - Latest release: 2 months ago - 4 dependent packages - 6 dependent repositories - 1.16 thousand downloads last month - 3 stars on GitHub - 3 maintainers
scipion-em-spider 3.1.7
Plugin to use Spider programs within the Scipion framework18 versions - Latest release: over 1 year ago - 1 dependent repositories - 250 downloads last month - 0 stars on GitHub - 3 maintainers
protein-metamorphisms-is 4.1.0
Comprehensive Python Module for Protein Data Management: Designed for streamlined integration and...25 versions - Latest release: 11 days ago - 1.75 thousand downloads last month - 4 stars on GitHub - 1 maintainer
scipion-em-gctf 3.2.1
Plugin to use Gctf program within the Scipion framework23 versions - Latest release: 5 months ago - 1 dependent repositories - 434 downloads last month - 2 stars on GitHub - 3 maintainers
scipion-em-eman2 3.6.1
Plugin to use EMAN programs within the Scipion framework21 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 508 downloads last month - 1 stars on GitHub - 3 maintainers
scipion-em-cryodrgn 3.12.5
Plugin to use cryoDRGN within the Scipion framework30 versions - Latest release: 6 months ago - 1 dependent repositories - 473 downloads last month - 3 stars on GitHub - 2 maintainers
emtable 0.0.14
Simple module to deal with EM tabular data (aka metadata)7 versions - Latest release: over 2 years ago - 10 dependent packages - 17 dependent repositories - 1.5 thousand downloads last month - 4 stars on GitHub - 2 maintainers
cpdb-protein 0.2.0 💰
Cython implementation of PDB -> DataFrame parsing3 versions - Latest release: almost 2 years ago - 695 downloads last month - 23 stars on GitHub - 1 maintainer
fandango-aria 2.2.0
ARIA connection for managing access and metadata deposition, primarily through fandanGO4 versions - Latest release: 7 months ago - 145 downloads last month - 3 stars on GitHub - 1 maintainer
fandango-aria-plugin 1.0.3
A Public Client library and CLI for interacting with ARIA's Data Deposition Service.4 versions - Latest release: about 1 year ago - 138 downloads last month - 3 stars on GitHub - 1 maintainer
scipion-em-gautomatch 3.0.19
Plugin to use Gautomatch program within the Scipion framework22 versions - Latest release: 8 months ago - 1 dependent repositories - 330 downloads last month - 2 stars on GitHub - 3 maintainers
ssbio 0.9.9
Tools to enable structural systems biology20 versions - Latest release: over 7 years ago - 3 dependent repositories - 421 downloads last month - 107 stars on GitHub - 1 maintainer
Top 6.3% on pypi.org
11 versions - Latest release: over 1 year ago - 1 dependent package - 5 dependent repositories - 572 downloads last month - 349 stars on GitHub - 1 maintainer
sidechainnet 1.0.1
Tools and data for all-atom protein structure prediction via machine learning.11 versions - Latest release: over 1 year ago - 1 dependent package - 5 dependent repositories - 572 downloads last month - 349 stars on GitHub - 1 maintainer
scipion-em-xlmtools 1.0.0
Plugin to use xlmtools-Tools programs within the Scipion framework1 version - Latest release: over 3 years ago - 1 dependent repositories - 46 downloads last month - 0 stars on GitHub - 1 maintainer
bioplottemplates 0.1.1
Plotting templates common in biological sciences.6 versions - Latest release: over 5 years ago - 1 dependent repositories - 233 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-cryomethods 1.1.1
Plugin to use Cryomethods program within the Scipion framework2 versions - Latest release: over 5 years ago - 1 dependent repositories - 51 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-pyworkflow-windows 0.1.0
Simple workflow platform used in scientific applications, initially developed within the Scipion ...21 versions - Latest release: 5 months ago - 346 downloads last month - 4 stars on GitHub - 1 maintainer
scipion-em-cryosparc2 4.2.1
Plugin to use cryoSPARC2 programs within the Scipion framework89 versions - Latest release: 23 days ago - 1 dependent repositories - 762 downloads last month - 2 stars on GitHub - 1 maintainer
pensa 0.6.0
exploratory analysis and comparison of biomolecular conformational ensembles.16 versions - Latest release: 3 months ago - 1 dependent repositories - 271 downloads last month - 80 stars on GitHub - 1 maintainer
Top 8.9% on pypi.org
64 versions - Latest release: 23 days ago - 14 dependent packages - 22 dependent repositories - 1.77 thousand downloads last month - 4 stars on GitHub - 2 maintainers
scipion-pyworkflow 3.10.6
Simple workflow platform used in scientific applications, initially developed within the Scipion ...64 versions - Latest release: 23 days ago - 14 dependent packages - 22 dependent repositories - 1.77 thousand downloads last month - 4 stars on GitHub - 2 maintainers
scipion-em-cistem 3.9.2
Plugin to use cisTEM programs within the Scipion framework26 versions - Latest release: 10 months ago - 1 dependent repositories - 371 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-tomotwin 3.5.1
Plugin to use TomoTwin within the Scipion framework11 versions - Latest release: 6 months ago - 225 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-locscale 3.1.2
Plugin to use Locscale program within the Scipion framework15 versions - Latest release: 6 months ago - 1 dependent repositories - 278 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.0% on pypi.org
38 versions - Latest release: almost 3 years ago - 5 dependent packages - 14 dependent repositories - 10.1 thousand downloads last month - 397 stars on GitHub - 1 maintainer
pdb-tools 2.5.0
A swiss army knife for PDB files.38 versions - Latest release: almost 3 years ago - 5 dependent packages - 14 dependent repositories - 10.1 thousand downloads last month - 397 stars on GitHub - 1 maintainer
scipion-em-novactf 3.2.1
Plugin to use NovaCTF in Scipion11 versions - Latest release: 6 months ago - 1 dependent repositories - 222 downloads last month - 1 stars on GitHub - 1 maintainer
prodigy-cryst 1.0.1
Predicts if a protein complex interface is biological or crystallographic.2 versions - Latest release: 12 months ago - 83 downloads last month - 8 stars on GitHub - 1 maintainer
scipion-em-motioncorr 3.16.7
Plugin to use motioncor programs within the Scipion framework38 versions - Latest release: 5 months ago - 1 dependent repositories - 576 downloads last month - 1 stars on GitHub - 3 maintainers
scipion-em-emantomo 3.3.5
Plugin to use EMAN2 tomography programs within the Scipion framework18 versions - Latest release: 7 months ago - 1 dependent repositories - 260 downloads last month - 2 stars on GitHub - 1 maintainer
pdb-objects 0.1.3
Object-oriented processing of Protein Databank (PDB) files4 versions - Latest release: almost 6 years ago - 1 dependent repositories - 138 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.9% on pypi.org
3 versions - Latest release: over 8 years ago - 5 dependent repositories - 539 downloads last month - 58 stars on GitHub - 1 maintainer
ipymol 0.5
IPyMOL allows you to control PyMOL sessions via IPython.3 versions - Latest release: over 8 years ago - 5 dependent repositories - 539 downloads last month - 58 stars on GitHub - 1 maintainer
scipion-em-warp 3.4.4
Plugin to use Warp within the Scipion framework14 versions - Latest release: 4 months ago - 382 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-fsc3d 3.2.2
Plugin to use 3DFSC within the Scipion framework11 versions - Latest release: about 2 months ago - 1 dependent repositories - 328 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-nysbc 1.0.3
Plugin to use NYSBC programs within the Scipion framework4 versions - Latest release: almost 6 years ago - 1 dependent repositories - 79 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-bamfordlab 3.0.0
Plugin to use Bamfordlab programs within the Scipion framework7 versions - Latest release: almost 5 years ago - 1 dependent repositories - 83 downloads last month - 0 stars on GitHub - 1 maintainer
mmcif-pdbx 2.0.1
Python utilities for PDBx/mmCIF storage model7 versions - Latest release: almost 4 years ago - 3 dependent packages - 3 dependent repositories - 123 thousand downloads last month - 6 stars on GitHub - 3 maintainers
lightdock 0.9.4 💰
A macromolecular docking framework20 versions - Latest release: over 1 year ago - 1 dependent repositories - 603 downloads last month - 318 stars on GitHub - 1 maintainer
scipion-em-simple 1.0.3
Plugin to use Simple programs within the Scipion framework4 versions - Latest release: about 6 years ago - 1 dependent repositories - 113 downloads last month - 0 stars on GitHub - 2 maintainers
proshade 0.7.4
Protein Shape Description and Symmetry Detection (ProSHADE) python module20 versions - Latest release: over 4 years ago - 1 dependent repositories - 1 thousand downloads last month - 3 stars on GitHub - 1 maintainer
pdb-tools-no-atom-limit 2.4.5 removed
A swiss army knife for PDB files.3 versions - Latest release: almost 3 years ago
Related Keywords
image-processing
41
cryo-em
41
electron-microscopy
41
scipion
37
scipion-3.0
32
bioinformatics
23
spa
22
python
12
protein
11
tomo
11
protein-structure
11
pdb
9
proteins
7
deep-learning
5
chemistry
5
biology
5
computational-biology
5
structural-bioinformatics
4
science
4
machine-learning
4
PDB
3
mmcif
3
bioinformatics-tool
3
structural biology
3
biophysics
3
biochemistry
3
rna
3
pdb-files
3
python-package
3
protein-data-bank
3
molecular
3
molecular-dynamics
3
crystallography
3
pytorch
2
graph-neural-networks
2
data-analysis
2
data-mining
2
rcsb
2
prediction
2
medical-research
2
MMCIF
2
fragment-screening
2
cryo-tomography
2
proteomics
2
molecules
2
subtomogram-averaging
2
graph neural network
2
protein-design
2
cheminformatics
2
workflows
2
core
2
molecular-structures
2
utrecht-university
2
pdb-parser
2
scipion-2.0
2
computational-chemistry
2
dynamics
2
molecular-modeling
2
CIF
2
other
1
superpose
1
monomeric
1
cluster
1
api-wrapper
1
emready
1
metrics
1
atom
1
pdb-database
1
pypi-packages
1
biomolecular surface
1
Streaming
1
Facility
1
linear algebra
1
distance
1
Facilities
1
clustering
1
imod
1
conformal-prediction
1
university-of-bristol
1
conformational-state
1
superposition
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parametric-modelling
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computational
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viruses
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structural
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plotting
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cryomethods
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cryoSPARC
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biomolecules
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novactf
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tomography
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ipython
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notebook
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pymol
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visualization
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artificial-intelligence
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dna
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docking
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glowworm-swarm-optimization
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molecular-biology
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