Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "structural-biology" keyword
scipion-em-cryomethods 1.1.1
Plugin to use Cryomethods program within the Scipion framework2 versions - Latest release: over 4 years ago - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-reliontomo 3.4.0
Plugin to use Relion programs for tomography within the Scipion framework15 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 159 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-novactf 3.1.2
Plugin to use NovaCTF in Scipion9 versions - Latest release: 6 months ago - 1 dependent repositories - 112 downloads last month - 1 stars on GitHub - 1 maintainer
Top 2.5% on pypi.org
48 versions - Latest release: 3 months ago - 44 dependent packages - 37 dependent repositories - 17 thousand downloads last month - 197 stars on GitHub - 1 maintainer
gemmi 0.6.5
library for structural biology48 versions - Latest release: 3 months ago - 44 dependent packages - 37 dependent repositories - 17 thousand downloads last month - 197 stars on GitHub - 1 maintainer
rnaglib 2.0.12
RNAglib: Tools for learning on the structure of RNA using 2.5D geometric representations16 versions - Latest release: 4 months ago - 1 dependent repositories - 137 downloads last month - 11 stars on GitHub - 2 maintainers
protein-metamorphisms-is 1.1.0
Comprehensive Python Module for Protein Data Management: Designed for streamlined integration and...1 version - Latest release: 2 months ago - 15 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-imod 3.4.1
Plugin to use some of the Tomography tools from IMOD in Scipion27 versions - Latest release: 3 months ago - 3 dependent packages - 2 dependent repositories - 237 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-cistem 3.9.1
Plugin to use cisTEM programs within the Scipion framework24 versions - Latest release: 1 day ago - 1 dependent repositories - 324 downloads last month - 1 stars on GitHub - 2 maintainers
mdahole2 0.4.0
A Python interface for the HOLE suite tools to analyze an ion channel pore or transporter pathway...1 version - Latest release: 4 months ago - 4.44 thousand downloads last month - 5 stars on GitHub - 1 maintainer
Top 8.9% on pypi.org
52 versions - Latest release: 3 days ago - 14 dependent packages - 22 dependent repositories - 494 downloads last month - 4 stars on GitHub - 2 maintainers
scipion-pyworkflow 3.6.0
Simple workflow platform used in scientific applications, initially developed within the Scipion ...52 versions - Latest release: 3 days ago - 14 dependent packages - 22 dependent repositories - 494 downloads last month - 4 stars on GitHub - 2 maintainers
scipion-em-tomo 3.6.1
Plugin to use electron tomography software within the Scipion framework32 versions - Latest release: about 2 months ago - 14 dependent packages - 13 dependent repositories - 382 downloads last month - 6 stars on GitHub - 1 maintainer
scipion-em-eman2 3.6.1
Plugin to use EMAN programs within the Scipion framework21 versions - Latest release: 27 days ago - 1 dependent package - 1 dependent repositories - 256 downloads last month - 1 stars on GitHub - 3 maintainers
Top 4.0% on pypi.org
38 versions - Latest release: almost 2 years ago - 5 dependent packages - 14 dependent repositories - 6.98 thousand downloads last month - 358 stars on GitHub - 1 maintainer
pdb-tools 2.5.0
A swiss army knife for PDB files.38 versions - Latest release: almost 2 years ago - 5 dependent packages - 14 dependent repositories - 6.98 thousand downloads last month - 358 stars on GitHub - 1 maintainer
mmcif-pdbx 2.0.1
Python utilities for PDBx/mmCIF storage model7 versions - Latest release: about 3 years ago - 3 dependent packages - 3 dependent repositories - 17.4 thousand downloads last month - 6 stars on GitHub - 3 maintainers
emtable 0.0.14
Simple module to deal with EM tabular data (aka metadata)7 versions - Latest release: almost 2 years ago - 10 dependent packages - 17 dependent repositories - 602 downloads last month - 4 stars on GitHub - 2 maintainers
Top 2.2% on pypi.org
53 versions - Latest release: about 1 month ago - 18 dependent packages - 22 dependent repositories - 17.3 thousand downloads last month - 557 stars on GitHub - 2 maintainers
biotite 0.40.0
A comprehensive library for computational molecular biology53 versions - Latest release: about 1 month ago - 18 dependent packages - 22 dependent repositories - 17.3 thousand downloads last month - 557 stars on GitHub - 2 maintainers
loco-hd 0.1.4
Implementation of the LoCoHD metric for quantitative protein structure and substructure comparison4 versions - Latest release: 3 months ago - 52 downloads last month - 0 stars on GitHub - 1 maintainer
Top 5.7% on pypi.org
30 versions - Latest release: 3 months ago - 1 dependent package - 3 dependent repositories - 1.21 thousand downloads last month - 927 stars on GitHub - 1 maintainer
graphein 1.7.6 💰
Protein & Interactomic Graph Construction for Machine Learning30 versions - Latest release: 3 months ago - 1 dependent package - 3 dependent repositories - 1.21 thousand downloads last month - 927 stars on GitHub - 1 maintainer
serd 0.1.2
A Python package to detect solvent-exposed residues of a target biomolecule.3 versions - Latest release: over 1 year ago - 1 dependent repositories - 67 downloads last month - 4 stars on GitHub - 1 maintainer
fandango-aria 2.0.1
ARIA plguin for data deposition in FandanGO2 versions - Latest release: 8 days ago - 264 downloads last month - 1 stars on GitHub - 1 maintainer
prodigy-cryst 1.0.1
Predicts if a protein complex interface is biological or crystallographic.2 versions - Latest release: 16 days ago - 286 downloads last month - 7 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
8 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 215 downloads last month - 796 stars on GitHub - 1 maintainer
molecularnodes 4.0.12
Toolbox for molecular animations with Blender and Geometry Nodes.8 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 215 downloads last month - 796 stars on GitHub - 1 maintainer
scipion-em-emready 3.0
EMReady: Improvement of cryo-EM maps by simultaneous local and non-local deep learning1 version - Latest release: 11 months ago - 10 downloads last month - 0 stars on GitHub - 1 maintainer
cpdb-protein 0.2.0 💰
Cython implementation of PDB -> DataFrame parsing3 versions - Latest release: 11 months ago - 50 downloads last month - 16 stars on GitHub - 1 maintainer
locuaz 0.7.5
Antibody optimization protocol33 versions - Latest release: 5 months ago - 318 downloads last month - 41 stars on GitHub - 1 maintainer
scipion-em-embuild 1.0.4
EMBuild: Model building of protein complexes from intermediate-resolution cryo-EM maps with deep ...5 versions - Latest release: about 1 year ago - 4 downloads last month - 1 maintainer
pycapsid 0.5.9
A set of computational tools written in python for the analysis of viral capsids54 versions - Latest release: 7 months ago - 451 downloads last month - 5 stars on GitHub - 2 maintainers
scipion-em-warp 3.2.3
Plugin to use Warp within the Scipion framework8 versions - Latest release: 28 days ago - 118 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-susantomo 3.0b4
Plugin to use SUSAN within the Scipion framework4 versions - Latest release: 3 months ago - 39 downloads last month - 2 stars on GitHub - 2 maintainers
ssbio 0.9.9
Tools to enable structural systems biology20 versions - Latest release: over 6 years ago - 3 dependent repositories - 138 downloads last month - 100 stars on GitHub - 1 maintainer
scipion-em-xlmtools 1.0.0
Plugin to use xlmtools-Tools programs within the Scipion framework1 version - Latest release: over 2 years ago - 1 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-sidesplitter 3.0.12
Plugin to use SIDESPLITTER program within the Scipion framework13 versions - Latest release: 6 months ago - 1 dependent repositories - 64 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-spoc 1.0.6
Plugin to use SPOC programs within the Scipion framework7 versions - Latest release: almost 2 years ago - 1 dependent repositories - 79 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-spider 3.1.7
Plugin to use Spider programs within the Scipion framework18 versions - Latest release: 6 months ago - 1 dependent repositories - 75 downloads last month - 0 stars on GitHub - 3 maintainers
scipion-em-sll 0.0.1
Scipion plugin for CryoEM tools developed at SciLifeLab1 version - Latest release: almost 5 years ago - 1 dependent repositories - 10 downloads last month - 1 maintainer
scipion-em-simple 1.0.3
Plugin to use Simple programs within the Scipion framework4 versions - Latest release: about 5 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-resmap 3.0.3
Plugin to use ResMap program within the Scipion framework12 versions - Latest release: almost 3 years ago - 1 dependent repositories - 45 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-nysbc 1.0.3
Plugin to use NYSBC programs within the Scipion framework4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-motioncorr 3.16.1
Plugin to use motioncor programs within the Scipion framework32 versions - Latest release: 3 months ago - 1 dependent repositories - 244 downloads last month - 1 stars on GitHub - 3 maintainers
scipion-em-locscale 3.0.5
Plugin to use Locscale program within the Scipion framework14 versions - Latest release: over 1 year ago - 1 dependent repositories - 65 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-gctf 3.1.3
Plugin to use Gctf program within the Scipion framework21 versions - Latest release: 6 months ago - 1 dependent repositories - 126 downloads last month - 2 stars on GitHub - 3 maintainers
scipion-em-imagic 3.0.13
Plugin to use IMAGIC programs within the Scipion framework15 versions - Latest release: 6 months ago - 1 dependent repositories - 64 downloads last month - 0 stars on GitHub - 3 maintainers
scipion-em-gautomatch 3.0.18
Plugin to use Gautomatch program within the Scipion framework19 versions - Latest release: 6 months ago - 1 dependent repositories - 67 downloads last month - 2 stars on GitHub - 3 maintainers
scipion-em-fsc3d 3.2.1
Plugin to use 3DFSC within the Scipion framework10 versions - Latest release: 6 months ago - 1 dependent repositories - 57 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-cryoef 3.0.15
Plugin to use Cryoef program within the Scipion framework16 versions - Latest release: 6 months ago - 1 dependent repositories - 65 downloads last month - 0 stars on GitHub - 3 maintainers
scipion-em-cryodrgn 3.12.2
Plugin to use cryoDRGN within the Scipion framework26 versions - Latest release: 2 months ago - 1 dependent repositories - 48 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-atsas 3.0.2
Plugin to use ATSAS programs within the Scipion framework11 versions - Latest release: over 3 years ago - 1 dependent repositories - 17 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-bamfordlab 3.0.0
Plugin to use Bamfordlab programs within the Scipion framework7 versions - Latest release: almost 4 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-bsoft 3.0.6
Plugin to use Cryoef program within the Scipion framework11 versions - Latest release: over 2 years ago - 1 dependent repositories - 53 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-aretomo 3.9.0
Plugin to use AreTomo program within the Scipion framework36 versions - Latest release: 2 months ago - 1 dependent repositories - 79 downloads last month - 1 stars on GitHub - 2 maintainers
rafm 1.1.4
rafm10 versions - Latest release: over 2 years ago - 1 dependent repositories - 81 downloads last month - 1 stars on GitHub - 1 maintainer
proteofav 0.2.3
PROtein Feature Aggregation and Variants.3 versions - Latest release: over 6 years ago - 1 dependent repositories - 15 downloads last month - 3 stars on GitHub - 1 maintainer
pensa 0.3.0
exploratory analysis and comparison of biomolecular conformational ensembles.13 versions - Latest release: 6 months ago - 1 dependent repositories - 118 downloads last month - 79 stars on GitHub - 1 maintainer
pdb-objects 0.1.3
Object-oriented processing of Protein Databank (PDB) files4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 41 downloads last month - 1 stars on GitHub - 1 maintainer
mdciao 0.0.6
mdciao: Analysis of Molecular Dynamics Simulations Using Residue Neighborhoods10 versions - Latest release: 9 months ago - 1 dependent repositories - 79 downloads last month - 29 stars on GitHub - 1 maintainer
lightdock 0.9.4 💰
A macromolecular docking framework20 versions - Latest release: 9 months ago - 1 dependent repositories - 527 downloads last month - 259 stars on GitHub - 1 maintainer
isambard 2.3.1
A package for biomolecular analysis, modelling and design3 versions - Latest release: about 3 years ago - 2 dependent repositories - 17 downloads last month - 19 stars on GitHub - 3 maintainers
Top 8.9% on pypi.org
3 versions - Latest release: over 7 years ago - 5 dependent repositories - 155 downloads last month - 54 stars on GitHub - 1 maintainer
ipymol 0.5
IPyMOL allows you to control PyMOL sessions via IPython.3 versions - Latest release: over 7 years ago - 5 dependent repositories - 155 downloads last month - 54 stars on GitHub - 1 maintainer
hydroid 0.0.9
HYDROID (HYDroxyl-Radical fOotprinting Interpretation for DNA) is a python package for the analys...1 version - Latest release: over 6 years ago - 1 dependent repositories - 5 downloads last month - 7 stars on GitHub - 1 maintainer
candiy-lemon 0.3.0
Mine data from the PDB in minutes3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 129 downloads last month - 51 stars on GitHub - 1 maintainer
bioplottemplates 0.1.1
Plotting templates common in biological sciences.6 versions - Latest release: over 4 years ago - 1 dependent repositories - 58 downloads last month - 0 stars on GitHub - 1 maintainer
proshade 0.7.4
Protein Shape Description and Symmetry Detection (ProSHADE) python module20 versions - Latest release: over 3 years ago - 1 dependent repositories - 475 downloads last month - 3 stars on GitHub - 1 maintainer
scipion-em-dynamo 3.1.21
Plugin to use DYNAMO within the Scipion framework22 versions - Latest release: 6 months ago - 1 dependent repositories - 142 downloads last month - 1 stars on GitHub - 1 maintainer
deeprank2 3.0.2
DeepRank2 is an open-source deep learning framework for data mining of protein-protein interfaces...6 versions - Latest release: about 2 months ago - 52 downloads last month - 28 stars on GitHub - 1 maintainer
Top 5.5% on pypi.org
31 versions - Latest release: over 2 years ago - 1 dependent package - 7 dependent repositories - 848 downloads last month - 101 stars on GitHub - 1 maintainer
atomium 1.0.11 💰
A molecular modeller and file parser.31 versions - Latest release: over 2 years ago - 1 dependent package - 7 dependent repositories - 848 downloads last month - 101 stars on GitHub - 1 maintainer
pdbsearch 0.4.0 💰
A library for searching for PDB structures using the official APIs.4 versions - Latest release: almost 2 years ago - 1 dependent repositories - 29 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-sphire 3.1.14
Plugin to use Sphire programs within the Scipion framework36 versions - Latest release: 3 months ago - 1 dependent repositories - 182 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-tomotwin 3.0.1
Plugin to use TomoTwin within the Scipion framework10 versions - Latest release: about 1 year ago - 39 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-emantomo 3.3.1
Plugin to use EMAN2 tomography programs within the Scipion framework14 versions - Latest release: about 2 months ago - 1 dependent repositories - 161 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-cryoassess 3.1.1
Plugin to use cryoassess within the Scipion framework10 versions - Latest release: over 1 year ago - 1 dependent repositories - 63 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-cryosparc2 4.1.0
Plugin to use cryoSPARC2 programs within the Scipion framework82 versions - Latest release: 17 days ago - 1 dependent repositories - 353 downloads last month - 2 stars on GitHub - 1 maintainer
biobuild 3.10.11
A fragment-based molecular assembly toolkit for python.1 version - Latest release: 9 months ago - 1 dependent package - 41 downloads last month - 1 stars on GitHub - 1 maintainer
pdb-tools-removed-atom-limit 2.4.5
A swiss army knife for PDB files, customized to avoid the original atom limit.1 version - Latest release: almost 2 years ago - 1 dependent repositories - 7 downloads last month - 0 stars on GitHub - 1 maintainer
py-packman 1.4.12
A software package for molecular PACKing and Motion ANalysis (PACKMAN)37 versions - Latest release: 4 months ago - 1 dependent repositories - 203 downloads last month - 29 stars on GitHub - 1 maintainer
emtools 0.0.11
Utilities for CryoEM data manipulation10 versions - Latest release: 2 months ago - 1 dependent package - 103 downloads last month - 6 stars on GitHub - 1 maintainer
scipion-em-relion 4.0.20
Plugin to use Relion programs within the Scipion framework61 versions - Latest release: 2 months ago - 4 dependent packages - 6 dependent repositories - 335 downloads last month - 3 stars on GitHub - 3 maintainers
lxtractor 0.1.5
Feature extraction library for sequences and structures12 versions - Latest release: 2 months ago - 1 dependent package - 50 downloads last month - 1 stars on GitHub - 1 maintainer
emcore 0.0.5
Python module to access functionality in the emcore library2 versions - Latest release: about 4 years ago - 1 dependent repositories - 17 downloads last month - 4 stars on GitHub - 1 maintainer
Top 6.3% on pypi.org
11 versions - Latest release: 7 months ago - 1 dependent package - 5 dependent repositories - 505 downloads last month - 296 stars on GitHub - 1 maintainer
sidechainnet 1.0.1
Tools and data for all-atom protein structure prediction via machine learning.11 versions - Latest release: 7 months ago - 1 dependent package - 5 dependent repositories - 505 downloads last month - 296 stars on GitHub - 1 maintainer
pdb-tools-no-atom-limit 2.4.5.2 removed
A swiss army knife for PDB files.3 versions - Latest release: almost 2 years ago
Related Keywords
image-processing
42
electron-microscopy
41
cryo-em
41
scipion
38
scipion-3.0
34
bioinformatics
23
spa
21
tomo
14
python
12
protein
10
protein-structure
10
pdb
8
proteins
6
deep-learning
5
chemistry
5
computational-biology
5
biology
5
machine-learning
4
cryo-tomography
3
science
3
subtomogram-averaging
3
protein-data-bank
3
pdb-files
3
structural-bioinformatics
3
biophysics
3
molecular-modeling
3
biochemistry
3
cheminformatics
3
PDB
3
graph-neural-networks
2
MMCIF
2
molecules
2
molecular-biology
2
data-analysis
2
data-mining
2
pdb-parser
2
rcsb
2
utrecht-university
2
molecular
2
dynamics
2
structural
2
crystallography
2
CIF
2
python-package
2
molecular-dynamics
2
mmcif
2
molecular-structures
2
computational-chemistry
2
scipion-2.0
2
graph neural network
2
rna
2
structural biology
2
pytorch
2
protein-design
2
swarm-intelligence
1
proteomics
1
protein-docking
1
parametric-modelling
1
protein-dna-interactions
1
university-of-bristol
1
protein-protein-interaction
1
ipython
1
annotations
1
dssp
1
features
1
sifts
1
variants
1
biomolecules
1
amino-acids
1
gpcr
1
gpcr-numbering
1
kinases
1
pdb-database
1
artificial-intelligence
1
bioinformatics-tool
1
dna
1
docking
1
glowworm-swarm-optimization
1
peptides
1
single-residue-variants
1
MMTF
1
api-wrapper
1
tomography
1
cryosparc
1
protein packing
1
protein domain
1
protein hinge
1
alpha-shape
1
protein-domain-identification
1
protein-hinge-prediction
1
data_mining
1
feature_extracton
1
structural_biology
1
bioinfomatics
1
feature-extraction
1
dataset
1
notebook
1
pymol
1
visualization
1
hydroxyl-radical
1