pypi.org "epidemiology" keyword
View the packages on the pypi.org package registry that are tagged with the "epidemiology" keyword.
hawc-client 2024.4
A client for the Health Assessment Workspace Collaborative (HAWC).11 versions - Latest release: 7 months ago - 1 dependent repositories - 27 downloads last month - 20 stars on GitHub - 2 maintainers
metawards 1.6.2
MetaWards disease metapopulation modelling29 versions - Latest release: over 3 years ago - 1 dependent repositories - 174 downloads last month - 13 stars on GitHub - 1 maintainer
compyrtment 0.5.7
A simple Python library for compartment models6 versions - Latest release: about 4 years ago - 63 downloads last month - 11 stars on GitHub - 1 maintainer
cdef-population-250625-multicsv 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 8 downloads last month - 1 maintainer
amira-amr 0.4.1
Amira5 versions - Latest release: 9 months ago - 48 downloads last month - 16 stars on GitHub - 1 maintainer
starsim 3.0.2
A fast, flexible agent-based disease modeling framework22 versions - Latest release: 12 days ago - 1.16 thousand downloads last month - 27 stars on GitHub - 2 maintainers
cladetime 0.3.0
Assign clades to SARS-CoV-2 genome sequences at a point in time.2 versions - Latest release: 7 months ago - 651 downloads last month - 6 stars on GitHub - 4 maintainers
forward 0.1.0
Tool for gene-based phenomic experiments using cohorts.1 version - Latest release: almost 10 years ago - 9 dependent repositories - 160 downloads last month - 4 stars on GitHub - 1 maintainer
amr 3.0.0
A Python wrapper for the AMR R package156 versions - Latest release: 3 months ago - 2.36 thousand downloads last month - 101 stars on GitHub - 1 maintainer
cdef-population-260625-canon 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 9 downloads last month - 1 maintainer
epydemiology 0.1.30
A library of Python code for epidemiologists22 versions - Latest release: over 5 years ago - 1 dependent repositories - 80 downloads last month - 8 stars on GitHub - 1 maintainer
cdef-population 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 4 months ago - 10 downloads last month - 1 maintainer
cdef-population-250625-opt 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 9 downloads last month - 1 maintainer
phyddle 0.3.0
Software for phylogenetic model exploration with deep learning10 versions - Latest release: 6 months ago - 21 downloads last month - 7 stars on GitHub - 2 maintainers
epymorph 1.0.0
EpiMoRPH spatial disease modeling3 versions - Latest release: 2 months ago - 31 downloads last month - 8 stars on GitHub - 1 maintainer
vaxsim 0.1.3
vaxsim is a python package for simulating the spread of Foot and Mouth Disease (FMD) using a disc...3 versions - Latest release: 6 months ago - 9 downloads last month - 0 stars on GitHub - 1 maintainer
cusir 1.0.1
A SIR diffusive model based in CuPy2 versions - Latest release: over 2 years ago - 13 downloads last month - 2 stars on GitHub - 1 maintainer
summerepi2 1.3.6
Summer is a compartmental disease modelling framework, written in Python. It provides a high-leve...35 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 118 downloads last month - 4 stars on GitHub - 1 maintainer
covvfit 0.3.1
Fitness estimates of SARS-CoV-2 variants4 versions - Latest release: 5 months ago - 26 downloads last month - 2 stars on GitHub - 1 maintainer
stisim 1.3.0
STI modelling toolbox built on the Starsim platform4 versions - Latest release: about 2 months ago - 43 downloads last month - 1 stars on GitHub - 2 maintainers
cdef-population-study-one 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 8 downloads last month - 1 maintainer
Top 6.2% on pypi.org
9 versions - Latest release: over 1 year ago - 5 dependent packages - 39 dependent repositories - 50 thousand downloads last month - 19 stars on GitHub - 1 maintainer
epiweeks 2.3.0
Epidemiological weeks calculation based on the US CDC (MMWR) and ISO week numbering systems9 versions - Latest release: over 1 year ago - 5 dependent packages - 39 dependent repositories - 50 thousand downloads last month - 19 stars on GitHub - 1 maintainer
cdef-population-250625 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 8 downloads last month - 1 maintainer
cdef-population-230625 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 9 downloads last month - 1 maintainer
gnuhealth-reporting 5.0.0
Healthcare data analytics package for GNU Health HIS30 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 543 downloads last month - 1 maintainer
cdef-population-250625-1 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 6 downloads last month - 1 maintainer
Top 8.5% on pypi.org
28 versions - Latest release: almost 3 years ago - 2 dependent repositories - 27.4 thousand downloads last month - 147 stars on GitHub - 1 maintainer
zepid 0.9.1
Tool package for epidemiologic analyses28 versions - Latest release: almost 3 years ago - 2 dependent repositories - 27.4 thousand downloads last month - 147 stars on GitHub - 1 maintainer
cdef-population-200625 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 9 downloads last month - 1 maintainer
cnvm 0.2.0
Continuous-time Noisy Voter Model (CNVM) of social dynamics.3 versions - Latest release: about 2 years ago - 18 downloads last month - 0 stars on GitHub - 1 maintainer
cdef-population-240625-1 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 7 downloads last month - 1 maintainer
cdef-population-study-one-pop 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 7 downloads last month - 1 maintainer
cdef-population-260625-1600 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 8 downloads last month - 1 maintainer
Top 8.0% on pypi.org
54 versions - Latest release: over 1 year ago - 2 dependent packages - 10 dependent repositories - 1.5 thousand downloads last month - 1 stars on GitHub - 3 maintainers
covasim 3.1.6
COVID-19 Agent-based Simulator54 versions - Latest release: over 1 year ago - 2 dependent packages - 10 dependent repositories - 1.5 thousand downloads last month - 1 stars on GitHub - 3 maintainers
cdef-population-260625-tables 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 7 downloads last month - 1 maintainer
pyinclusion 0.0.4
A simple library to generate subject inclusion flow chart for epidemiology analysis3 versions - Latest release: over 3 years ago - 1 dependent repositories - 7 downloads last month - 0 stars on GitHub - 1 maintainer
cdef-scd-matching-polars-plugin-toby 0.1.0
High-performance Rust-based plugin for Polars that performs epidemiologically sound case-control ...1 version - Latest release: 9 days ago - 1 maintainer
cdef-scd-matching-polars-plugin 0.1.0
High-performance Rust-based plugin for Polars that performs epidemiologically sound case-control ...1 version - Latest release: 10 days ago - 1 maintainer
compartmentsplus 0.1.4
Unified API for compartmental modeling5 versions - Latest release: almost 3 years ago - 26 downloads last month - 1 maintainer
epistoch 0.1.13
Epidemics Models with Random Infectious Period11 versions - Latest release: over 5 years ago - 1 dependent repositories - 19 downloads last month - 1 stars on GitHub - 1 maintainer
cdef-population-240625 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 6 downloads last month - 1 maintainer
covsirphy 3.1.2 💰
COVID-19 data analysis with phase-dependent SIR-derived ODE models60 versions - Latest release: about 1 year ago - 1 dependent repositories - 215 downloads last month - 112 stars on GitHub - 1 maintainer
cdef-scd-matching-plugin 0.1.0
High-performance Rust-based plugin for Polars that performs epidemiologically sound case-control ...1 version - Latest release: 10 days ago
scd-matching-plugin 0.1.0
High-performance Rust-based plugin for Polars that performs epidemiologically sound case-control ...1 version - Latest release: 10 days ago
cdef-population-250625-nowide 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 6 downloads last month - 1 maintainer
scd-polars-matching-plugin 0.1.0
High-performance Rust-based plugin for Polars that performs epidemiologically sound case-control ...1 version - Latest release: 11 days ago
episuite 0.3.0
A suite of tools for epidemiology in Python3 versions - Latest release: over 4 years ago - 1 dependent repositories - 16 downloads last month - 30 stars on GitHub - 1 maintainer
penn-chime 1.1.3
Covid-19 Hospital Impact Model for Epidemics4 versions - Latest release: over 5 years ago - 2 dependent repositories - 90 downloads last month - 211 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
22 versions - Latest release: almost 6 years ago - 2 dependent repositories - 14 downloads last month - 41 stars on GitHub - 1 maintainer
epitator 1.3.5
Annotators for extracting epidemiological information from text.22 versions - Latest release: almost 6 years ago - 2 dependent repositories - 14 downloads last month - 41 stars on GitHub - 1 maintainer
py-compart-model 0.1.1
User friendly syntax of compartment model, especially dedicated to epidemiological models.1 version - Latest release: over 3 years ago - 1 dependent repositories - 4 downloads last month - 0 stars on GitHub - 1 maintainer
scd-analysis 1.0.0
Severe Chronic Disease (SCD) Analysis Pipeline for Danish National Registers1 version - Latest release: 12 days ago
epispot 2.1.1
A tool for modeling infectious diseases.12 versions - Latest release: over 4 years ago - 1 dependent repositories - 38 downloads last month - 17 stars on GitHub - 2 maintainers
epidemik 0.1.3
A package to simulate compartmental epidemic models16 versions - Latest release: 5 months ago - 36 downloads last month - 14 stars on GitHub - 1 maintainer
pycovid-19 2.0.1
Covid Python plots and maps6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on framagit.org - 1 maintainer
sadie 0.2.0
Sadie is an agent-based modelling environment for stochastic agents in discrete time in Euclidean...5 versions - Latest release: almost 5 years ago - 1 dependent repositories - 25 downloads last month - 1 stars on GitHub - 1 maintainer
missingdata 0.1.3
missing data visualization and imputation5 versions - Latest release: about 6 years ago - 1 dependent repositories - 49 downloads last month - 18 stars on GitHub - 1 maintainer
pumphandle 0.0.2
Tools for computational epidemiology2 versions - Latest release: almost 12 years ago - 2 dependent repositories - 4 downloads last month - 2 stars on GitHub - 1 maintainer
cdef-population-190625-1 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 6 downloads last month - 1 maintainer
cdef-population-230625-1 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 6 downloads last month - 1 maintainer
seirsplus 1.0.9
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, test...51 versions - Latest release: about 5 years ago - 5 dependent repositories - 55 downloads last month - 671 stars on GitHub - 1 maintainer
cdef-population-190625 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 16 downloads last month - 1 maintainer
cdef-population-maj 0.1.0 removed
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 1 maintainer
mosqlient 1.9.3
client library for the mosqlimate client library29 versions - Latest release: 4 months ago - 633 downloads last month - 4 stars on GitHub - 1 maintainer
outbreaker 1.0.5
Explore WHO Disease Outbreak News5 versions - Latest release: over 4 years ago - 1 dependent repositories - 36 downloads last month - 1 stars on GitHub - 1 maintainer
cdef-population-190625-2 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 22 downloads last month - 1 maintainer
epispot-nightly 3.0.0a3
The nightly version of the epispot package.41 versions - Latest release: almost 4 years ago - 1 dependent repositories - 187 downloads last month - 17 stars on GitHub - 2 maintainers
sepline-dst-encoding 0.1.0
categorize Danish educational data according to Hjort et al (2025)1 version - Latest release: 19 days ago
sepline-dst 0.1.0
categorize Danish educational data according to Hjort et al (2025)1 version - Latest release: 19 days ago
sepline-dst-education 0.1.0
categorize Danish educational data according to Hjort et al (2025)1 version - Latest release: 19 days ago
vargram 0.4.0
A Python visualization tool for genomic surveillance4 versions - Latest release: 3 months ago - 97 downloads last month - 0 stars on GitHub - 1 maintainer
sepline-dst-categorizer 0.1.0
categorize Danish educational data according to Hjort et al (2025)1 version - Latest release: 19 days ago - 1 maintainer
epicas 0.1.0
An AutoML framework designed for epidemiological forecasting1 version - Latest release: almost 4 years ago - 1 dependent repositories - 5 downloads last month - 1 stars on GitHub - 1 maintainer
bio-epidemiology-ner 0.1.3
Recognize bio-medical entities from a text corpus13 versions - Latest release: about 3 years ago - 239 downloads last month - 101 stars on GitHub - 3 maintainers
pydemic 2020.2.2
A python driver for epidemic modeling and inference3 versions - Latest release: almost 5 years ago - 1 dependent repositories - 21 downloads last month - 7 stars on GitHub - 1 maintainer
mesa-sir 0.0.3
A Mesa extension for SIR models3 versions - Latest release: over 5 years ago - 1 dependent repositories - 17 downloads last month - 40 stars on GitHub - 2 maintainers
cdef-population-tobias 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 16 downloads last month - 1 maintainer
epigraphhub 2.1.1
Epigraphhub Python package11 versions - Latest release: over 1 year ago - 1 dependent repositories - 91 downloads last month - 2 stars on GitHub - 2 maintainers
dengsurvap-bf 0.1.0
Client Python pour l'API de surveillance de la dengue1 version - Latest release: 2 months ago - 1 maintainer
cov19 0.0.9
Prediction for the spread of COVID-19 using Epidemiological Models9 versions - Latest release: about 5 years ago - 1 dependent repositories - 35 downloads last month - 1 stars on GitHub - 1 maintainer
epipy 0.0.2
Python tools for epidemiology.3 versions - Latest release: over 11 years ago - 2 dependent repositories - 16 downloads last month - 135 stars on GitHub - 1 maintainer
epiweeks-barc 0.0.1
Epidemiological weeks based on the CDC (MMWR) and ISO week numbering systems.1 version - Latest release: over 5 years ago - 1 dependent repositories - 44 downloads last month - 0 stars on GitHub - 1 maintainer
june 1.2.0
A framework for high resolution Agent Based Modelling.7 versions - Latest release: almost 3 years ago - 5 dependent repositories - 152 downloads last month - 48 stars on GitHub - 1 maintainer
cdef-population-my-fav 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 77 downloads last month - 1 maintainer
episimmer 2.2.2
Epidemic Simulation Platform4 versions - Latest release: over 3 years ago - 1 dependent repositories - 24 downloads last month - 16 stars on GitHub - 1 maintainer
summerepi 3.6.4
Summer is a compartmental disease modelling framework, written in Python. It provides a high-leve...52 versions - Latest release: over 2 years ago - 1 dependent repositories - 204 downloads last month - 8 stars on GitHub - 2 maintainers
cdef-population-almost 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 1 maintainer
cdef-population-study 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 74 downloads last month - 1 maintainer
cdef-population-260625-1740 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 12 downloads last month - 1 maintainer
sponet 2.8.0
Spreading Processes on Networks25 versions - Latest release: about 1 month ago - 44 downloads last month - 3 stars on GitHub - 1 maintainer
cdef-population-250625-refactored 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 12 downloads last month - 1 maintainer
opmatch 1.0.1
A leightweight package to perform optimal case-control matching.2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
cdef-population-260625 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 2 months ago - 56 downloads last month - 1 maintainer
opqua 1.2.1
An epidemiological modeling framework for population genetics and evolution.37 versions - Latest release: over 1 year ago - 1 dependent repositories - 75 downloads last month - 18 stars on GitHub - 1 maintainer
alertadengue 3.2.0 💰
AlertaDengue package1 version - Latest release: over 2 years ago - 30 downloads last month - 28 stars on GitHub - 1 maintainer
cdef-population-fav 0.1.0 removed
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 1 maintainer
cdef-population-favorit 0.1.0 removed
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 1 maintainer
cdef-population-favoritten 0.1.0 removed
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago - 1 maintainer
cdef-population-toby 0.1.0
Danish registry data analysis for severe chronic diseases in children and their families1 version - Latest release: 3 months ago
Related Keywords
healthcare
36
population-health
36
danish-registry
35
severe-chronic-disease
35
python
10
covid-19
9
epidemic-simulations
7
coronavirus
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covid
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matching
6
rust
5
scd
5
disease
5
epidemics
5
agent-based model
5
polars
5
case-control
5
agent-based-modeling
5
simulation
5
epidemic-model
4
surveillance
4
public-health
3
data-science
3
biostatistics
3
compartmental-models
3
infectious
3
modeling
3
epidemiology-analysis
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sir-model
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evolution
2
api
2
visualization
2
compartmental
2
infectious-disease-models
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health
2
calendar
2
iso
2
mmwr
2
cdc
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weeks
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infectious-diseases
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agent-based-simulation
2
sars-cov-2
2
machine-learning
2
data science
2
covid19
2
compartment
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nlp
2
stochastic
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voter-model
2
statistical-physics
2
social-dynamics
2
opinion-dynamics
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interacting-particle-system
2
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2
statistical physics
2
opinion dynamics
2
social dynamics
2
voter model
2
disease-surveillance
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amr
2
starsim
2
bioinformatics
2
genomics
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science
1
vulnerability-detection
1
usermodel
1
recommender
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policy
1
intervention
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decision-support-system
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numerical-modelling
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1
geoannotation
1
geoname
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monte-carlo
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geonames
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spacy
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toponym-resolution
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solve_ivp
1
python-library
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dengue-fever
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code-for-america
1
biology
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code-for-philly
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penn
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pharmacoepidemiology
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matching methods
1
matching algorithms
1
case-control matching
1
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1
statistics
1
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