Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "biology" keyword
ndex_examples 1.0.0.dev6
These example illustrate the use of NDEx from Python.6 versions - Latest release: almost 9 years ago - 2 dependent repositories - 64 downloads last month - 1 maintainer
treesnake 0.1.0
TreeSnake is a python package for inferring evolutionary trees1 version - Latest release: over 2 years ago - 1 dependent repositories - 16 downloads last month - 2 maintainers
ngsphy 1.0.13
phylogenomic simulation of NGS data13 versions - Latest release: about 6 years ago - 1 dependent repositories - 117 downloads last month - 14 stars on GitHub - 2 maintainers
Top 8.0% on pypi.org
47 versions - Latest release: 3 months ago - 11 dependent packages - 33 dependent repositories - 12 thousand downloads last month - 6 stars on GitHub - 6 maintainers
ndex2 3.8.0
Nice CX Python includes a client and a data model.47 versions - Latest release: 3 months ago - 11 dependent packages - 33 dependent repositories - 12 thousand downloads last month - 6 stars on GitHub - 6 maintainers
Top 1.7% on pypi.org
859 versions - Latest release: about 1 month ago - 6 dependent packages - 55 dependent repositories - 26.9 thousand downloads last month - 5,140 stars on GitHub - 4 maintainers
deepchem 2.8.0
Deep learning models for drug discovery, quantum chemistry, and the life sciences.859 versions - Latest release: about 1 month ago - 6 dependent packages - 55 dependent repositories - 26.9 thousand downloads last month - 5,140 stars on GitHub - 4 maintainers
Top 1.7% on pypi.org
24 versions - Latest release: 11 months ago - 24 dependent packages - 109 dependent repositories - 7.27 thousand downloads last month - 4 maintainers
dendropy 4.6.1
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, proc...24 versions - Latest release: 11 months ago - 24 dependent packages - 109 dependent repositories - 7.27 thousand downloads last month - 4 maintainers
Top 8.9% on pypi.org
23 versions - Latest release: 9 days ago - 2 dependent packages - 1 dependent repositories - 1.67 thousand downloads last month - 176 stars on GitHub - 2 maintainers
snapatac2 2.6.1
SnapATAC2: Single-cell epigenomics analysis pipeline23 versions - Latest release: 9 days ago - 2 dependent packages - 1 dependent repositories - 1.67 thousand downloads last month - 176 stars on GitHub - 2 maintainers
Top 9.5% on pypi.org
30 versions - Latest release: over 7 years ago - 8 dependent repositories - 201 downloads last month - 2 stars on GitHub - 6 maintainers
ndex 3.0.11
NDEx Python includes a client and a data model.30 versions - Latest release: over 7 years ago - 8 dependent repositories - 201 downloads last month - 2 stars on GitHub - 6 maintainers
Top 6.4% on pypi.org
25 versions - Latest release: about 2 years ago - 5 dependent packages - 12 dependent repositories - 2.42 thousand downloads last month - 33 stars on GitHub - 4 maintainers
sbol3 1.0.1
Python implementation of SBOL 3 standard25 versions - Latest release: about 2 years ago - 5 dependent packages - 12 dependent repositories - 2.42 thousand downloads last month - 33 stars on GitHub - 4 maintainers
Top 10.0% on pypi.org
12 versions - Latest release: about 1 month ago - 1 dependent package - 2 dependent repositories - 198 downloads last month - 1 maintainer
bonesis 0.6.5
Synthesis of Most Permissive Boolean Networks12 versions - Latest release: about 1 month ago - 1 dependent package - 2 dependent repositories - 198 downloads last month - 1 maintainer
Top 2.5% on pypi.org
48 versions - Latest release: 3 months ago - 36 dependent packages - 37 dependent repositories - 16.1 thousand downloads last month - 196 stars on GitHub - 1 maintainer
gemmi 0.6.5
library for structural biology48 versions - Latest release: 3 months ago - 36 dependent packages - 37 dependent repositories - 16.1 thousand downloads last month - 196 stars on GitHub - 1 maintainer
Top 8.4% on pypi.org
14 versions - Latest release: about 2 years ago - 1 dependent package - 11 dependent repositories - 1.37 thousand downloads last month - 20 stars on GitHub - 4 maintainers
sbol2 1.4.1
Pure Python implementation of SBOL 2 standard14 versions - Latest release: about 2 years ago - 1 dependent package - 11 dependent repositories - 1.37 thousand downloads last month - 20 stars on GitHub - 4 maintainers
caspo-control 1.0
Python wrapper for caspo control2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 31 downloads last month - 0 stars on GitHub - 1 maintainer
afscgap 1.0.4
Tools for interacting with the public bottom trawl surveys data from the NOAA AFSC GAP.14 versions - Latest release: 11 months ago - 2 dependent repositories - 127 downloads last month - 5 stars on GitHub - 2 maintainers
alphafold3 0.0.4 💰
Paper - Pytorch3 versions - Latest release: 3 days ago - 477 downloads last month - 391 stars on GitHub - 2 maintainers
lib310-lite 0.1.1
lib310 Lite Python Package52 versions - Latest release: 9 months ago - 292 downloads last month - 4 maintainers
nafcodec 0.2.0
PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format ...2 versions - Latest release: about 1 month ago - 367 downloads last month - 3 stars on GitHub - 2 maintainers
scikit-divemove 0.3.3
Python interface to R package diveMove26 versions - Latest release: about 1 month ago - 1 dependent repositories - 308 downloads last month - 1 stars on GitHub - 2 maintainers
cbsm 0.0.5
A compartment based scaledown model for modeling the dynamics of a bioreactor6 versions - Latest release: 4 months ago - 46 downloads last month - 3 maintainers
maspy 1.1.3
An open-source python library for mass spectrometry-based proteomics data analysis2 versions - Latest release: over 7 years ago - 2 dependent repositories - 8 downloads last month - 2 stars on GitHub - 2 maintainers
atlasapprox 0.2.0
Cell atlas approximations, Python API3 versions - Latest release: 6 months ago - 33 downloads last month - 0 stars on GitHub - 2 maintainers
Top 7.6% on pypi.org
25 versions - Latest release: about 1 month ago - 13 dependent repositories - 925 downloads last month - 45 stars on GitHub - 4 maintainers
biothings 0.12.4
a toolkit for building high-performance data APIs in biology25 versions - Latest release: about 1 month ago - 13 dependent repositories - 925 downloads last month - 45 stars on GitHub - 4 maintainers
Top 8.9% on pypi.org
12 versions - Latest release: 1 day ago - 1 dependent package - 6 dependent repositories - 937 downloads last month - 21 stars on GitHub - 1 maintainer
pybiopax 0.1.5
A Python implementation of the BioPAX object model, and parts of PaxTools.12 versions - Latest release: 1 day ago - 1 dependent package - 6 dependent repositories - 937 downloads last month - 21 stars on GitHub - 1 maintainer
pioreactor 24.5.1
The core Python app of the Pioreactor. Control your bioreactor through Python.58 versions - Latest release: 11 days ago - 1 dependent repositories - 414 downloads last month - 87 stars on GitHub - 2 maintainers
spatialpy 1.2.2
Python Interface for Spatial Stochastic Biochemical Simulations11 versions - Latest release: about 1 year ago - 1 dependent repositories - 86 downloads last month - 16 stars on GitHub - 1 maintainer
physcraper 1.0.0
Physcraper7 versions - Latest release: over 2 years ago - 1 dependent repositories - 63 downloads last month - 12 stars on GitHub - 2 maintainers
Top 5.0% on pypi.org
16 versions - Latest release: 4 months ago - 2 dependent packages - 8 dependent repositories - 19.8 thousand downloads last month - 104 stars on GitHub - 6 maintainers
pdb2pqr 3.6.2 💰
Automates many of the common tasks of preparing structures for continuum solvation calculations a...16 versions - Latest release: 4 months ago - 2 dependent packages - 8 dependent repositories - 19.8 thousand downloads last month - 104 stars on GitHub - 6 maintainers
Top 4.5% on pypi.org
115 versions - Latest release: 11 months ago - 4 dependent packages - 38 dependent repositories - 637 downloads last month - 240 stars on GitHub - 6 maintainers
wikidataintegrator 0.9.30
Python package for reading and writing to/from Wikidata115 versions - Latest release: 11 months ago - 4 dependent packages - 38 dependent repositories - 637 downloads last month - 240 stars on GitHub - 6 maintainers
deepac 0.14.1
Predicting pathogenic potentials of novel DNA with reverse-complement neural networks.19 versions - Latest release: over 1 year ago - 8 dependent repositories - 211 downloads last month - 2 stars on GitLab.com - 2 maintainers
Top 2.0% on pypi.org
34 versions - Latest release: about 3 years ago - 2 dependent packages - 74 dependent repositories - 8.78 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
multiqc 1.10.1
Create aggregate bioinformatics analysis reports across many samples and tools34 versions - Latest release: about 3 years ago - 2 dependent packages - 74 dependent repositories - 8.78 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
sc-supertree 2024.5.6
Spectral Cluster Supertree3 versions - Latest release: 6 days ago - 100 downloads last month - 5 stars on GitHub - 2 maintainers
proteingraphml 0.1.1
Knowledge Graphs for Protein Science2 versions - Latest release: over 2 years ago - 1 dependent repositories - 24 downloads last month - 16 stars on GitHub - 2 maintainers
Top 8.3% on pypi.org
17 versions - Latest release: 2 days ago - 1 dependent package - 10 dependent repositories - 1.21 thousand downloads last month - 18 stars on GitHub - 3 maintainers
adeft 0.12.0
Acromine based Disambiguation of Entities From Text17 versions - Latest release: 2 days ago - 1 dependent package - 10 dependent repositories - 1.21 thousand downloads last month - 18 stars on GitHub - 3 maintainers
optoconfig96 1.0.5
A GUI tool to configure optoPlate96 experiments5 versions - Latest release: over 1 year ago - 1 dependent repositories - 50 downloads last month - 9 stars on GitHub - 2 maintainers
etfba 0.0.1
ETFBA is a package for constraints-based metabolic flux analysis1 version - Latest release: 4 days ago - 130 downloads last month - 0 stars on GitHub - 2 maintainers
pyseq2500 0.64
Control an Illumina HiSeq 2500 System8 versions - Latest release: about 2 years ago - 1 dependent repositories - 56 downloads last month - 18 stars on GitHub - 2 maintainers
pynsm 1.0.1
A PyTorch implementation of non-negative similarity matching2 versions - Latest release: 8 months ago - 23 downloads last month - 0 stars on GitHub - 2 maintainers
partsdb 0.2.0
Database of genetic parts3 versions - Latest release: almost 7 years ago - 2 dependent repositories - 17 downloads last month - 4 stars on GitHub - 1 maintainer
bio-aid 0.3.1
Genetic Analysis Tools22 versions - Latest release: 8 months ago - 26 downloads last month - 1 maintainer
protkit 0.3.0
A unified toolkit for structural protein engineering.8 versions - Latest release: 3 days ago - 189 downloads last month - 28 stars on GitHub - 2 maintainers
Top 4.3% on pypi.org
48 versions - Latest release: 3 days ago - 1 dependent package - 4 dependent repositories - 9.17 thousand downloads last month - 216 stars on GitHub - 4 maintainers
nf-core 2.14.1
Helper tools for use with nf-core Nextflow pipelines.48 versions - Latest release: 3 days ago - 1 dependent package - 4 dependent repositories - 9.17 thousand downloads last month - 216 stars on GitHub - 4 maintainers
myoquant 0.3.5
MyoQuant🔬: a tool to automatically quantify pathological features in muscle fiber histology images.16 versions - Latest release: 12 months ago - 124 downloads last month - 2 stars on GitHub - 1 maintainer
tigerlily 0.1.0 💰
TigerLily: Finding drug interactions in-silico with the Graph.2 versions - Latest release: about 2 years ago - 1 dependent repositories - 20 downloads last month - 97 stars on GitHub - 1 maintainer
snapgenefilereader 0.1.11
A Python project to read and write Snapgene *.dna into dict, json, and biopython object.8 versions - Latest release: over 6 years ago - 1 dependent repositories - 25 downloads last month - 2 maintainers
cxmate 0.15.0
SDK for creating cxMate services15 versions - Latest release: over 6 years ago - 1 dependent repositories - 143 downloads last month - 1 stars on GitHub - 2 maintainers
Top 6.3% on pypi.org
28 versions - Latest release: over 1 year ago - 2 dependent packages - 10 dependent repositories - 810 downloads last month - 160 stars on GitHub - 2 maintainers
indra 1.22.0
Integrated Network and Dynamical Reasoning Assembler28 versions - Latest release: over 1 year ago - 2 dependent packages - 10 dependent repositories - 810 downloads last month - 160 stars on GitHub - 2 maintainers
biodatatypes 0.2.1
Nucleotide, amino acid, and codon datatypes for Python2 versions - Latest release: 10 months ago - 27 downloads last month - 0 stars on GitHub - 2 maintainers
deepchem-nightly 2.3.0
Deep learning models for drug discovery, quantum chemistry, and the life sciences.33 versions - Latest release: almost 4 years ago - 1 dependent repositories - 136 downloads last month - 5,140 stars on GitHub - 1 maintainer
molgraph 0.6.7
Graph Neural Networks for Molecular Machine Learning38 versions - Latest release: 4 days ago - 1 dependent repositories - 600 downloads last month - 44 stars on GitHub - 1 maintainer
Top 2.2% on pypi.org
99 versions - Latest release: 6 months ago - 37 dependent packages - 240 dependent repositories - 13.3 thousand downloads last month - 442 stars on GitHub - 5 maintainers
cobra 0.29.0
COBRApy is a package for constraint-based modeling of metabolic networks.99 versions - Latest release: 6 months ago - 37 dependent packages - 240 dependent repositories - 13.3 thousand downloads last month - 442 stars on GitHub - 5 maintainers
Top 3.3% on pypi.org
112 versions - Latest release: over 1 year ago - 5 dependent packages - 15 dependent repositories - 7.39 thousand downloads last month - 155 stars on GitHub - 2 maintainers
pydna 5.2.0
Representing double stranded DNA and functions for simulating cloning and homologous recombinatio...112 versions - Latest release: over 1 year ago - 5 dependent packages - 15 dependent repositories - 7.39 thousand downloads last month - 155 stars on GitHub - 2 maintainers
bluecellulab 2.6.12
Biologically detailed neural network simulations and analysis.102 versions - Latest release: 4 days ago - 1 dependent package - 1 dependent repositories - 2.58 thousand downloads last month - 8 stars on GitHub - 1 maintainer
biothings_explorer_test 0.3.0
Python Client for BioThings Explorer1 version - Latest release: almost 6 years ago - 18 downloads last month - 8 stars on GitHub - 2 maintainers
scbamtools 0.5
High performance Cython + Python tools to process BAM files with tags as they arise in single-cel...3 versions - Latest release: about 2 months ago - 13 downloads last month - 1 stars on GitHub - 2 maintainers
shapeshifter 1.1.1
A tool for managing large datasets5 versions - Latest release: about 5 years ago - 1 dependent repositories - 61 downloads last month - 2 stars on GitHub - 2 maintainers
expressionable 1.2
A tool for managing large datasets3 versions - Latest release: about 5 years ago - 2 dependent repositories - 37 downloads last month - 2 stars on GitHub - 4 maintainers
symbac 0.4.0
A package for generating synthetic images of bactera in phase contrast or fluorescence. Used for ...13 versions - Latest release: 2 months ago - 1 dependent repositories - 68 downloads last month - 17 stars on GitHub - 2 maintainers
actonet 1.0
Abduction-based control of Boolean networks fixpoints2 versions - Latest release: almost 4 years ago - 43 downloads last month - 1 maintainer
synbiochem-py 0.6.34
synbiochem-py: Core python modules for SYNBIOCHEM95 versions - Latest release: about 4 years ago - 3 dependent repositories - 322 downloads last month - 2 stars on GitHub - 2 maintainers
Top 6.9% on pypi.org
20 versions - Latest release: 3 months ago - 2 dependent packages - 5 dependent repositories - 1.69 thousand downloads last month - 93 stars on GitHub - 1 maintainer
cogent3 2024.2.5a1
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems ...20 versions - Latest release: 3 months ago - 2 dependent packages - 5 dependent repositories - 1.69 thousand downloads last month - 93 stars on GitHub - 1 maintainer
orthoevol 0.9.0a2
This package aids in the analysis of orthologous genes.1 version - Latest release: over 6 years ago - 1 dependent repositories - 10 downloads last month - 27 stars on GitHub - 4 maintainers
skittle-sheets 0.0.5
Lightweight design of plate-based experiments5 versions - Latest release: 4 months ago - 33 downloads last month - 1 stars on GitHub - 2 maintainers
marsi 0.3.5
marsi - Metabolite Analogues for Rational Strain Improvement5 versions - Latest release: over 6 years ago - 1 dependent repositories - 14 downloads last month - 0 stars on GitHub - 2 maintainers
freeflux 0.3.6
FreeFlux is a package for 13C metabolic flux analysis7 versions - Latest release: 2 months ago - 55 downloads last month - 8 stars on GitHub - 2 maintainers
Top 7.3% on pypi.org
20 versions - Latest release: 3 months ago - 2 dependent repositories - 825 downloads last month - 339 stars on GitHub - 3 maintainers
histolab 0.7.0 💰
Python library for Digital Pathology Image Processing20 versions - Latest release: 3 months ago - 2 dependent repositories - 825 downloads last month - 339 stars on GitHub - 3 maintainers
pygenomes 0.1.0
a command-line tool for downloading genome data from UCSC ftp site.1 version - Latest release: almost 9 years ago - 2 dependent repositories - 13 downloads last month - 2 maintainers
moldrug 3.7.2
MolDrug (from Molecule to Drug) is a python package for drug-oriented optimization on the chemica...34 versions - Latest release: 4 months ago - 1 dependent repositories - 240 downloads last month - 9 stars on GitHub - 1 maintainer
toff 0.1.0
toff is a python package to get topologies from the OpenFF initiative5 versions - Latest release: 10 months ago - 42 downloads last month - 0 stars on GitHub - 2 maintainers
glytrait 0.2.3
A tool for calculating derived traits for N-glycome6 versions - Latest release: 12 months ago - 483 downloads last month - 0 stars on GitHub - 2 maintainers
biocrnpyler 1.1.1 💰
A chemical reaction network compiler for generating large biological circuit models8 versions - Latest release: over 2 years ago - 1 dependent repositories - 69 downloads last month - 34 stars on GitHub - 10 maintainers
corda 0.5.1
Genome-scale model construction with CORDA15 versions - Latest release: over 1 year ago - 1 dependent package - 2 dependent repositories - 201 downloads last month - 21 stars on GitHub - 1 maintainer
genomedashboard 0.0.90
Genome Dashboard is the logic behind a web-based prototype of a genomics dashboard, specifically ...64 versions - Latest release: over 4 years ago - 1 dependent repositories - 423 downloads last month - 2 stars on GitHub - 4 maintainers
Top 8.1% on pypi.org
89 versions - Latest release: 5 months ago - 3 dependent packages - 13 dependent repositories - 141 downloads last month - 2 maintainers
sbtab 1.0.8
SBtab - Standardised Data Tables for Systems Biology89 versions - Latest release: 5 months ago - 3 dependent packages - 13 dependent repositories - 141 downloads last month - 2 maintainers
yeastmlp 1.0.5
Python package for analysis of Multicellular-like phenotype formation in yeast species9 versions - Latest release: 7 days ago - 119 downloads last month - 1 stars on GitHub - 2 maintainers
bionorm 0.7.11
normalize, verify, and select genomic data20 versions - Latest release: about 3 years ago - 108 downloads last month - 0 stars on GitHub - 4 maintainers
ghini.desktop 3.1.7
Ghini: a biodiversity collection manager9 versions - Latest release: over 5 years ago - 24 downloads last month - 24 stars on GitHub - 2 maintainers
multiworm 0.1.1
Python interface for Multi-Worm Tracker data1 version - Latest release: over 7 years ago - 1 dependent repositories - 22 downloads last month - 1 stars on GitHub - 2 maintainers
emmaa 1.17.0
Ecosystem of Machine-maintained Models with Automated Analysis15 versions - Latest release: almost 3 years ago - 1 dependent repositories - 143 downloads last month - 10 stars on GitHub - 1 maintainer
orcapy 1.0.1
Tool for predicting the origin of replication on circular bacterial chromosomes2 versions - Latest release: 2 months ago - 21 downloads last month - 11 stars on GitHub - 2 maintainers
Top 10.0% on pypi.org
2 versions - Latest release: over 5 years ago - 4 dependent repositories - 454 downloads last month - 2 maintainers
valerius 0.2.0
Biological sequence analysis tools.2 versions - Latest release: over 5 years ago - 4 dependent repositories - 454 downloads last month - 2 maintainers
pycoc 0.0.1
PyCoC - an easy to use COPASI API for python1 version - Latest release: over 3 years ago - 1 dependent repositories - 7 downloads last month - 2 maintainers
geom3d 0.0
Geometric Modeling on 3D Data1 version - Latest release: 9 months ago - 29 downloads last month - 85 stars on GitHub - 2 maintainers
ontolopy 1.1.1b0
Ontolopy is a package for working with ontology (.obo) files from Python.5 versions - Latest release: over 2 years ago - 1 dependent repositories - 15 downloads last month - 2 stars on GitHub - 2 maintainers
cana 0.2.0
This package implements a series of methods used to study control, canalization and redundancy in...7 versions - Latest release: about 1 year ago - 117 downloads last month - 21 stars on GitHub - 6 maintainers
Top 5.5% on pypi.org
31 versions - Latest release: over 2 years ago - 1 dependent package - 7 dependent repositories - 848 downloads last month - 101 stars on GitHub - 1 maintainer
atomium 1.0.11 💰
A molecular modeller and file parser.31 versions - Latest release: over 2 years ago - 1 dependent package - 7 dependent repositories - 848 downloads last month - 101 stars on GitHub - 1 maintainer
sbol3-for-pudu 1.0.0a1
Python implementation of SBOL 3 standard compatible with PUDU1 version - Latest release: 8 months ago - 7 downloads last month - 0 stars on GitHub - 2 maintainers
nellie 0.1.8
Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cel...8 versions - Latest release: 16 days ago - 339 downloads last month - 26 stars on GitHub - 2 maintainers
biobear 0.20.0 💰
A package for working with Bioinformatics data with SQL and Arrow49 versions - Latest release: 18 days ago - 1 dependent package - 3.42 thousand downloads last month - 122 stars on GitHub - 2 maintainers
biosimulators-cobrapy 0.1.23
BioSimulators-compliant command-line interface to the COBRApy simulation program <https://opencob...24 versions - Latest release: about 2 years ago - 3 dependent repositories - 223 downloads last month - 2 stars on GitHub - 4 maintainers
ndex2-dev 2.0.0.6
Nice CX Python includes a client and a data model.103 versions - Latest release: over 5 years ago - 1 dependent repositories - 204 downloads last month - 5 stars on GitHub - 3 maintainers
gccov 1.0.3
Visualize gc & coverage.5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 34 downloads last month - 0 stars on GitHub - 2 maintainers
medusa-cobra 0.2.1
Ensemble modeling using constraint-based reconstruction and analysis (COBRA)4 versions - Latest release: almost 4 years ago - 1 dependent repositories - 53 downloads last month - 19 stars on GitHub - 2 maintainers
Top 1.6% on pypi.org
11 versions - Latest release: 6 months ago - 6 dependent packages - 74 dependent repositories - 63.8 thousand downloads last month - 14 stars on GitHub - 4 maintainers
biothings-client 0.3.1
Python Client for BioThings API services.11 versions - Latest release: 6 months ago - 6 dependent packages - 74 dependent repositories - 63.8 thousand downloads last month - 14 stars on GitHub - 4 maintainers
sci-phy 0.1.0
Sci-Phy is a python package for the statistical analysis and modelling of evolved data using phy...1 version - Latest release: over 2 years ago - 1 dependent repositories - 24 downloads last month - 2 maintainers
nrpcalc 1.6.3
Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts ...2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 15 downloads last month - 6 stars on GitHub - 2 maintainers
biomappings 0.3.7
Curated and predicted mappings between biomedical identifiers in different namespaces16 versions - Latest release: 7 months ago - 1 dependent package - 2 dependent repositories - 228 downloads last month - 48 stars on GitHub - 2 maintainers
de-toolkit 0.9.12
Suite of tools for working with count data29 versions - Latest release: over 4 years ago - 1 dependent repositories - 169 downloads last month - 2 maintainers
dfbapy 0.0.4
Simulate dynamic Flux Balance Analysis (dFBA) of BiGG models, with compatibility to the BiGG-SABI...4 versions - Latest release: about 2 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 2 maintainers
mgkit 0.5.8
Metagenomics Framework30 versions - Latest release: over 2 years ago - 2 dependent repositories - 147 downloads last month - 12 stars on GitHub - 2 maintainers
Related Keywords
bioinformatics
117
python
69
systems
40
genomics
29
science
29
analysis
28
chemistry
26
sequencing
25
protein
24
computational-biology
23
synthetic
23
DNA
23
computational
22
simulation
18
cell
18
dna
18
metabolism
18
deep-learning
17
genome
16
systems-biology
16
modeling
15
genetics
14
phylogenetics
14
evolution
13
network
13
machine-learning
12
data
11
optimization
11
synthetic-biology
11
biochemistry
11
NGS
10
phylogeny
10
research
10
whole-cell
9
microscopy
9
fasta
8
artificial intelligence
8
hacktoberfest
8
ontology
8
model
8
sbml
7
proteins
7
database
7
image-analysis
7
gene
7
RNA
7
next generation sequencing
7
cell-biology
7
design
7
computational biology
7
sequence
7
pipeline
7
flux
7
image-processing
7
rna
6
assembly
6
biodiversity
6
prediction
6
gui
6
networks
6
synbio
6
automation
6
segmentation
6
pypi
6
learning
6
api
6
balance
5
visualization
5
proteomics
5
reproduction-code
5
reproduction
5
dataset
5
molecular
5
client
5
tensorflow
5
simulator
5
drug-design
5
pytorch
5
bacteria
5
dna-assembly
5
molecular-biology
5
lab
5
image
5
quality control
5
fluorescence
5
statistics
5
transcription
5
whole-cell-modeling
5
cheminformatics
5
structural-biology
5
data-science
5
biophysics
5
fba
5
ncbi
4
hybridization
4
FISH
4
image-segmentation
4
quality-control
4
ecology
4
data-visualization
4