Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "medical" keyword

Top 0.5% on pypi.org
pydicom 2.4.4 πŸ’°
A pure Python package for reading and writing DICOM data
38 versions - Latest release: 5 months ago - 300 dependent packages - 1,519 dependent repositories - 561 thousand downloads last month - 1,764 stars on GitHub - 3 maintainers
Top 1.1% on pypi.org
vispy 0.14.2
Interactive visualization in Python
38 versions - Latest release: 2 months ago - 73 dependent packages - 287 dependent repositories - 96.8 thousand downloads last month - 3,206 stars on GitHub - 3 maintainers
Top 2.0% on pypi.org
torchio 0.19.6
Tools for medical image processing with PyTorch
248 versions - Latest release: 3 months ago - 19 dependent packages - 79 dependent repositories - 33.5 thousand downloads last month - 1,888 stars on GitHub - 1 maintainer
Top 1.4% on pypi.org
dipy 1.9.0
Diffusion MRI Imaging in Python
27 versions - Latest release: 2 months ago - 46 dependent packages - 204 dependent repositories - 29.2 thousand downloads last month - 651 stars on GitHub - 4 maintainers
Top 2.4% on pypi.org
medpy 0.5.1
Medical image processing in Python
8 versions - Latest release: about 1 month ago - 15 dependent packages - 233 dependent repositories - 19.1 thousand downloads last month - 544 stars on GitHub - 1 maintainer
Top 5.2% on pypi.org
pydicom-seg 0.4.1
Python package for DICOM-SEG medical segmentation file reading and writing
8 versions - Latest release: about 1 year ago - 11 dependent packages - 7 dependent repositories - 14.9 thousand downloads last month - 68 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
torchxrayvision 1.2.3 πŸ’°
TorchXRayVision: A library of chest X-ray datasets and models
43 versions - Latest release: 4 days ago - 1 dependent package - 31 dependent repositories - 13.6 thousand downloads last month - 775 stars on GitHub - 2 maintainers
drug-named-entity-recognition 1.0.3
Drug Named Entity Recognition library to find and resolve drug names in a string (drug named enti...
5 versions - Latest release: about 1 month ago - 11.6 thousand downloads last month - 14 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
medmnist 3.0.1
MedMNIST: 18 MNIST-like Datasets for 2D and 3D Biomedical Image Classification
10 versions - Latest release: 4 months ago - 3 dependent packages - 18 dependent repositories - 9.97 thousand downloads last month - 977 stars on GitHub - 1 maintainer
edsnlp 0.11.2
Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for Fre...
33 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 7.37 thousand downloads last month - 97 stars on GitHub - 3 maintainers
Top 9.1% on pypi.org
slideio 2.5.0
Reading of medical images
33 versions - Latest release: 2 months ago - 2 dependent packages - 6 dependent repositories - 4.92 thousand downloads last month - 41 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
dicom-anonymizer 1.0.12 πŸ’°
Program to anonymize dicom files with default and custom rules
12 versions - Latest release: about 2 months ago - 2 dependent packages - 3 dependent repositories - 4.24 thousand downloads last month - 83 stars on GitHub - 3 maintainers
Top 4.0% on pypi.org
visvis 1.14.0
An object oriented approach to visualization of 1D to 4D data.
24 versions - Latest release: over 1 year ago - 4 dependent packages - 62 dependent repositories - 2.28 thousand downloads last month - 226 stars on GitHub - 1 maintainer
scikit-surgerycore 0.7.2
scikit-surgerycore contains commonly used Image Guided Surgery algorithms and tools
30 versions - Latest release: about 1 month ago - 4 dependent packages - 16 dependent repositories - 2.25 thousand downloads last month - 6 stars on GitHub - 2 maintainers
Top 5.2% on pypi.org
pylinac 3.23.0
A toolkit for performing TG-142 QA-related tasks on a linear accelerator
117 versions - Latest release: 3 days ago - 2 dependent packages - 9 dependent repositories - 2.16 thousand downloads last month - 139 stars on GitHub - 2 maintainers
Top 5.3% on pypi.org
deid 0.3.23 πŸ’°
best effort deidentify dicom with python and pydicom
74 versions - Latest release: 8 months ago - 3 dependent packages - 4 dependent repositories - 1.74 thousand downloads last month - 131 stars on GitHub - 1 maintainer
Top 3.0% on pypi.org
dicom 0.9.9.post1 πŸ’°
Pure python package for DICOM medical file reading and writing
1 version - Latest release: over 7 years ago - 2 dependent packages - 66 dependent repositories - 1.65 thousand downloads last month - 1,810 stars on GitHub - 1 maintainer
ngff-zarr 0.8.1
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr impleme...
23 versions - Latest release: 2 months ago - 2 dependent packages - 1 dependent repositories - 1.38 thousand downloads last month - 18 stars on GitHub - 1 maintainer
slicerio 1.0.0
Utilities for 3D Slicer
10 versions - Latest release: 9 days ago - 1 dependent repositories - 1.26 thousand downloads last month - 31 stars on GitHub - 1 maintainer
imagedata 3.5.4
Read/write medical image data
113 versions - Latest release: 23 days ago - 4 dependent packages - 2 dependent repositories - 1.17 thousand downloads last month - 9 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
fw-file 3.3.3
Unified data-file interface
54 versions - Latest release: about 1 month ago - 10 dependent packages - 24 dependent repositories - 876 downloads last month - 1 maintainer
Top 10.0% on pypi.org
holoscan 2.0.0
The Holoscan SDK: building high-performance AI streaming applications
8 versions - Latest release: 29 days ago - 1 dependent package - 1 dependent repositories - 805 downloads last month - 93 stars on GitHub - 3 maintainers
rdm 0.11.1
Regulatory Documentation Manager
22 versions - Latest release: about 2 years ago - 637 downloads last month - 106 stars on GitHub - 1 maintainer
Top 9.5% on pypi.org
scikit-surgeryvtk 2.1.1
scikit-surgeryvtk implements VTK for Image Guided Surgery applications
60 versions - Latest release: 3 months ago - 2 dependent packages - 7 dependent repositories - 590 downloads last month - 18 stars on GitHub - 2 maintainers
Top 9.3% on pypi.org
scikit-surgerynditracker 1.0.1
Interface for Northern Digital (NDI) Trackers with data to NumPy arrays
30 versions - Latest release: 3 months ago - 1 dependent package - 4 dependent repositories - 552 downloads last month - 38 stars on GitHub - 2 maintainers
pyigtl 0.3.1
Python interface for OpenIGTLink
4 versions - Latest release: over 1 year ago - 1 dependent repositories - 512 downloads last month - 24 stars on GitHub - 1 maintainer
med-imagetools 1.2.0
Transparent and reproducible image processing pipelines in Python.
24 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 493 downloads last month - 26 stars on GitHub - 2 maintainers
fuse-med-ml 0.3.0
A python framework accelerating ML based discovery in the medical field by encouraging code reuse...
22 versions - Latest release: about 1 year ago - 1 dependent repositories - 450 downloads last month - 126 stars on GitHub - 1 maintainer
vilmedic 1.3.3
ViLMedic is a modular framework for multimodal research at the intersection of vision and languag...
30 versions - Latest release: 5 months ago - 1 dependent repositories - 402 downloads last month - 1 maintainer
medimgproc 2.7.4
Medical Image Processing module for viewing and editing.
123 versions - Latest release: almost 3 years ago - 1 dependent repositories - 383 downloads last month - 2 stars on GitHub - 2 maintainers
scikit-surgeryimage 0.10.1
scikit-surgeryimage implements image processing tools and alogrithms for Image Guided Surgery.
45 versions - Latest release: about 2 years ago - 3 dependent packages - 8 dependent repositories - 362 downloads last month - 0 stars on GitHub - 2 maintainers
scikit-surgerycalibration 0.2.5
scikit-surgerycalibration provides algorithms designed for the calibration of surgical instruments
26 versions - Latest release: about 1 month ago - 1 dependent package - 6 dependent repositories - 334 downloads last month - 7 stars on GitHub - 2 maintainers
zensols.mednlp 1.7.0
A natural language medical domain parsing library.
15 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 316 downloads last month - 9 stars on GitHub - 1 maintainer
imagedata-registration 0.2.4
Image registration routines for Imagedata
12 versions - Latest release: 2 months ago - 306 downloads last month - 0 stars on GitHub - 1 maintainer
fhir-kindling 1.0.3
Python library to simplify working with FHIR servers and resources.
37 versions - Latest release: 8 months ago - 2 dependent packages - 2 dependent repositories - 288 downloads last month - 14 stars on GitHub - 1 maintainer
copyxnat 0.9.6
CopyXnat is a python utility for copying XNAT projects from one XNAT server to another
65 versions - Latest release: almost 3 years ago - 1 dependent repositories - 278 downloads last month - 3 stars on GitHub - 1 maintainer
dcm-processor 1.1.3
A Command line tool for the dicom processor library
41 versions - Latest release: 16 days ago - 1 dependent repositories - 278 downloads last month - 1 maintainer
delia 1.2.7
DICOM Extraction for Large-scale Image Analysis (DELIA).
33 versions - Latest release: 5 months ago - 1 dependent package - 264 downloads last month - 12 stars on GitHub - 1 maintainer
scikit-surgeryutils 2.0.0
scikit-surgeryutils - Tests/demos utilities, based around opencv-contrib-python-headless and PySide6
23 versions - Latest release: 11 months ago - 1 dependent package - 5 dependent repositories - 247 downloads last month - 3 stars on GitHub - 2 maintainers
imaging-research 0.1.1
Medical Imaginging Research structuring and automation
17 versions - Latest release: 17 days ago - 228 downloads last month - 0 stars on GitHub - 1 maintainer
heartfem 3.6.3
Optimization of patient specific heart model with myocardium FEM and cardiovascular network Windk...
31 versions - Latest release: over 2 years ago - 1 dependent repositories - 225 downloads last month - 6 stars on GitHub - 1 maintainer
eds-scikit 0.1.7
eds-scikit is a Python library providing tools to
10 versions - Latest release: about 1 month ago - 1 dependent repositories - 219 downloads last month - 31 stars on GitHub - 3 maintainers
Top 9.1% on pypi.org
rising 0.3.0
Provides everything needed for high performance data loading and augmentation in pytorch.
8 versions - Latest release: over 1 year ago - 5 dependent repositories - 217 downloads last month - 310 stars on GitHub - 2 maintainers
imshowtk 1.0.0
A lightweight replacement for openCV imshow using Tk
2 versions - Latest release: about 1 year ago - 209 downloads last month - 0 stars on GitHub - 1 maintainer
scikit-surgeryarucotracker 1.0.3
scikit-surgeryarucotracker is a simple tracking interface using ARuCo markers
22 versions - Latest release: about 1 year ago - 2 dependent packages - 7 dependent repositories - 195 downloads last month - 0 stars on GitHub - 2 maintainers
pynetdicom2 0.9.7
pynetdicom2 is a pure python package implementing the DICOM network protocol
8 versions - Latest release: about 2 years ago - 1 dependent repositories - 183 downloads last month - 10 stars on GitHub - 1 maintainer
bipl 0.5.8
Openslide/libtiff/GDAL ndarray-like interface and lazy parallel tile-based processing
30 versions - Latest release: 3 days ago - 181 downloads last month - 3 stars on GitHub - 1 maintainer
robust-deid 0.3.1
A package to remove private information (PHI/PII) from medical notes.
5 versions - Latest release: 10 months ago - 1 dependent repositories - 173 downloads last month - 38 stars on GitHub - 2 maintainers
mlx90632-driver 1.3.0
Python library for MLX90632
12 versions - Latest release: over 3 years ago - 1 dependent repositories - 163 downloads last month - 2 stars on GitHub - 1 maintainer
i2t2 0.1.7
Suite of useful tools for manipulating medical images.
19 versions - Latest release: over 3 years ago - 1 dependent repositories - 160 downloads last month - 3 stars on GitHub - 1 maintainer
medpy2 0.0.2 removed
Medical image processing in Python
2 versions - Latest release: 3 months ago - 158 downloads last month - 541 stars on GitHub - 1 maintainer
pylinac-qatrackplus 2.5.1
A toolkit for performing TG-142 QA-related tasks on a linear accelerator
30 versions - Latest release: about 3 years ago - 1 dependent repositories - 153 downloads last month - 0 stars on GitHub - 1 maintainer
paperetl 2.2.1
ETL processes for medical and scientific papers
10 versions - Latest release: 8 months ago - 1 dependent repositories - 146 downloads last month - 301 stars on GitHub - 1 maintainer
pysin 1.6.1
PySin is a toolbox for text retrieval in unstructured documents datasets. It contains both a mult...
16 versions - Latest release: almost 4 years ago - 137 downloads last month - 1 maintainer
pyezzi 0.5.2
Thickness calculation on binary 3D images
15 versions - Latest release: almost 2 years ago - 1 dependent repositories - 134 downloads last month - 1 maintainer
ukritlib 0.3.13 πŸ’°
Testing Python Package From Ukrit Fongsomboon
14 versions - Latest release: about 3 years ago - 1 dependent repositories - 129 downloads last month - 1,827 stars on GitHub - 1 maintainer
imagedata-format-biff 0.0.10
Imagedata format plugin for biff image data
7 versions - Latest release: about 1 month ago - 1 dependent repositories - 126 downloads last month - 0 stars on GitHub - 1 maintainer
dwilib 0.1.8.dev0
Research tools for MRI-based CAD of cancer
10 versions - Latest release: over 5 years ago - 1 dependent repositories - 120 downloads last month - 8 stars on GitHub - 1 maintainer
pydicom-ext 0.6.1
Additional functions for dicom data manipulation
6 versions - Latest release: over 5 years ago - 2 dependent repositories - 120 downloads last month - 1 stars on GitHub - 1 maintainer
fhir2dataset 0.1.6
Transform FHIR to Dataset
16 versions - Latest release: about 3 years ago - 111 downloads last month - 25 stars on GitHub - 1 maintainer
scikit-surgerytorch 0.2.6
scikit-surgerytorch is a Python package
9 versions - Latest release: about 2 years ago - 1 dependent repositories - 109 downloads last month - 0 stars on GitHub - 1 maintainer
labelfusion 1.0.14
Label fusion strategies for multi-class labels.
18 versions - Latest release: 10 months ago - 1 dependent repositories - 104 downloads last month - 10 stars on GitHub - 1 maintainer
medfl 0.1.7
Python Open-source package for simulating federated learning and differential privacy
5 versions - Latest release: about 1 month ago - 103 downloads last month - 1 maintainer
Top 9.1% on pypi.org
infermedica-api 1.0.0
The Infermedica Python client for Infermedica API.
14 versions - Latest release: over 3 years ago - 17 dependent repositories - 96 downloads last month - 55 stars on GitHub - 2 maintainers
zensols.mimicsid 1.7.0
Use the MedSecId section annotations with MIMIC-III corpus parsing.
12 versions - Latest release: 2 months ago - 1 dependent package - 92 downloads last month - 2 stars on GitHub - 1 maintainer
carepoint 0.1.7
This library will allow you to interact with CarePoint using Python.
9 versions - Latest release: over 7 years ago - 92 downloads last month - 2 stars on GitHub - 1 maintainer
bronchipy 0.2.0
Supporting tools for processing the output of the AirFlow pipeline.
11 versions - Latest release: 9 months ago - 90 downloads last month - 1 maintainer
bluebutton 0.3.0
The Blue Button Python Library
3 versions - Latest release: about 9 years ago - 2 dependent repositories - 87 downloads last month - 6 stars on GitHub - 2 maintainers
vidi3d 1.3.3
Visualizes 3d/4d NumPy arrays using Matplotlib and PyQt5.
12 versions - Latest release: 7 months ago - 2 dependent repositories - 87 downloads last month - 1 stars on GitHub - 1 maintainer
dicomsorter 0.1.0a6
Python library for sorting DICOM images
6 versions - Latest release: about 1 year ago - 1 dependent repositories - 82 downloads last month - 3 stars on GitHub - 1 maintainer
medimage 1.0.7
Represent medical images as numpy array. Supported: .mhd (R/W),.xdr (R/W), dicom (R). Pure Python.
8 versions - Latest release: about 4 years ago - 1 dependent repositories - 81 downloads last month - 6 stars on GitHub - 1 maintainer
frd-score 0.0.1
Package for calculating FrΓ©chet Radiomics Distance (FRD)
1 version - Latest release: 17 days ago - 79 downloads last month - 0 stars on GitHub - 1 maintainer
spydcmtk 1.1.6
Simple python dicom toolkit.
9 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 79 downloads last month - 0 stars on GitHub - 1 maintainer
mudicom 0.1.2
Read, validate, anonymize, and extract images from a DICOM file using GDCM
11 versions - Latest release: over 8 years ago - 4 dependent repositories - 79 downloads last month - 33 stars on GitHub - 1 maintainer
fhir-tools 0.1.4
Toolbox for working with FHIR Resources and Types
5 versions - Latest release: about 3 years ago - 1 dependent repositories - 79 downloads last month - 0 stars on GitHub - 1 maintainer
medigan 1.0.0
medigan is a modular open-source Python library that provides an interface to multiple generative...
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 76 downloads last month - 106 stars on GitHub - 2 maintainers
scikit-surgerysurfacematch 0.4.5
Tools for reconstructing and matching surfaces represented as point clouds.
15 versions - Latest release: over 3 years ago - 1 dependent repositories - 74 downloads last month - 2 stars on GitHub - 2 maintainers
python-daily-med 0.1.0b76
Interact with US NLM Daily Med API using Python.
17 versions - Latest release: over 7 years ago - 1 dependent repositories - 72 downloads last month - 12 stars on GitHub - 1 maintainer
scikit-surgerytf 0.2.1
scikit-surgerytf is a Python package for Tensor Flow examples and utilities
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 69 downloads last month - 1 stars on GitHub - 2 maintainers
scikit-surgerybard 1.0.0
scikit-surgerybard is a Basic Augmented Reality Demo (BARD)based on scikit-surgery (SNAPPY)
11 versions - Latest release: 11 months ago - 1 dependent repositories - 67 downloads last month - 6 stars on GitHub - 2 maintainers
prostate-nomograms 0.0.9
Prediction tools based on existing prostate cancer nomograms.
9 versions - Latest release: 11 months ago - 66 downloads last month - 1 stars on GitHub - 1 maintainer
snappysonic 0.0.8
snappysonic provides an application to simulate an ultrasound probe moving over a body torso, it ...
7 versions - Latest release: about 1 year ago - 1 dependent repositories - 64 downloads last month - 12 stars on GitHub - 2 maintainers
imbdrl 2021.1.26.1
Imbalanced Classification with Deep Reinforcement Learning.
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 63 downloads last month - 25 stars on GitHub - 1 maintainer
physionet 0.1.3
A collection of tools for working with the PhysioNet repository.
5 versions - Latest release: 11 months ago - 1 dependent repositories - 63 downloads last month - 67 stars on GitHub - 3 maintainers
bodynavigation 0.3.5
Body navigation in CT images
21 versions - Latest release: over 3 years ago - 1 dependent repositories - 60 downloads last month - 4 stars on GitHub - 1 maintainer
scikit-surgeryspeech 0.3.2
Interface to speech services for image-guided surgery.
12 versions - Latest release: about 2 years ago - 1 dependent repositories - 58 downloads last month - 0 stars on GitHub - 2 maintainers
bmdanalyse 0.2.0
Tool to analyse regional changes in a time series of 2D medical images.
4 versions - Latest release: almost 8 years ago - 56 downloads last month - 12 stars on GitHub - 1 maintainer
tbccpylinac 3.1.1
A modified version of Pylinac made specifically for TBCC. Pylinac is a toolkit for performing TG-...
11 versions - Latest release: over 3 years ago - 1 dependent repositories - 55 downloads last month - 1 stars on GitHub - 1 maintainer
medical-shape 0.1.2 πŸ’°
A torchio extension for shape processing
8 versions - Latest release: almost 2 years ago - 1 dependent repositories - 55 downloads last month - 3 stars on GitHub - 1 maintainer
medical-dl-utils 0.1.6 πŸ’°
Helpful utilities for deep learning in medical image analysis/medical image computing
9 versions - Latest release: almost 2 years ago - 1 dependent repositories - 55 downloads last month - 1 stars on GitHub - 1 maintainer
scikit-surgerybk 0.3.5
Python package for interfacing with BK Ultrasound machines
8 versions - Latest release: about 2 years ago - 1 dependent repositories - 54 downloads last month - 0 stars on GitHub - 2 maintainers
Top 10.0% on pypi.org
paperai 2.2.1
Semantic search and workflows for medical/scientific papers
13 versions - Latest release: 8 months ago - 1 dependent repositories - 54 downloads last month - 1,175 stars on GitHub - 1 maintainer
arip 1.0.2
ARIP, software to quantify bacterial resistance to antibiotics by analysing picture of phenotypic...
3 versions - Latest release: over 7 years ago - 1 dependent repositories - 54 downloads last month - 1 stars on GitHub - 1 maintainer
python-rebase 0.3.3
Python implementation of the ReBase API
12 versions - Latest release: 3 months ago - 53 downloads last month - 1 stars on GitHub - 1 maintainer
scikit-surgerytrackervisualisation 0.0.5
Provides a live visualisation of tracking data from a scikit-surgerytracker source
5 versions - Latest release: about 2 years ago - 1 dependent repositories - 52 downloads last month - 1 stars on GitHub - 2 maintainers
dicom-tools 0.9.1
Package for DICOM medical images analysis.
10 versions - Latest release: over 6 years ago - 1 dependent repositories - 52 downloads last month - 6 stars on GitHub - 1 maintainer
odoo10-addon-medical-pathology 10.0.1.0.0.99.dev7 πŸ’°
Extends Odoo Medical with pathologies (diseases).
8 versions - Latest release: about 5 years ago - 1 dependent repositories - 50 downloads last month - 254 stars on GitHub - 1 maintainer
scikit-surgeryfred 0.1.5
FRED provides an interactive demonstration of fiducial based registration for teaching purposes
15 versions - Latest release: over 2 years ago - 2 dependent repositories - 50 downloads last month - 3 stars on GitHub - 2 maintainers
mritopng 2.0
Easily convert MRI filed based on the DICOM format to a PNG image
4 versions - Latest release: 9 months ago - 4 dependent repositories - 49 downloads last month - 135 stars on GitHub - 1 maintainer
mchp-flasher-essentials 0.0.6
Collection of packages required for HB20 Flasher
6 versions - Latest release: about 2 years ago - 1 dependent repositories - 47 downloads last month - 1 maintainer