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pypi.org "mri" keyword

View the packages on the pypi.org package registry that are tagged with the "mri" keyword.

deepinv 0.3.0
Pytorch library for solving inverse problems with deep learning
8 versions - Latest release: 7 days ago - 1 dependent repositories - 1.2 thousand downloads last month - 400 stars on GitHub - 1 maintainer
mrqy 0.0.3
MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance i...
3 versions - Latest release: about 1 year ago - 128 downloads last month - 88 stars on GitHub - 1 maintainer
airflow-imaging-plugins 2.4.3
Airflow plugins to support Neuroimaging tasks.
43 versions - Latest release: over 7 years ago - 1 dependent repositories - 1.02 thousand downloads last month - 15 stars on GitHub - 2 maintainers
niseq 0.0.2
Group sequential tests for neuroimaging
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 208 downloads last month - 8 stars on GitHub - 1 maintainer
bids-derivatives 0.0.1
Python package for querying BIDS Apps` processed derivatives.
2 versions - Latest release: over 2 years ago - 82 downloads last month - 2 stars on GitHub - 1 maintainer
dmri-pcconv 1.0.0
Parametric Continuous Convolution framework used for Diffusion MRI.
1 version - Latest release: over 1 year ago - 49 downloads last month - 0 stars on GitHub - 1 maintainer
Top 1.4% on pypi.org
dipy 1.11.0
Diffusion MRI Imaging in Python
29 versions - Latest release: about 1 month ago - 46 dependent packages - 204 dependent repositories - 36.3 thousand downloads last month - 750 stars on GitHub - 4 maintainers
nondefaced-detector 0.1.3
A package to detect if an MRI Volume has been defaced.
4 versions - Latest release: about 4 years ago - 1 dependent repositories - 108 downloads last month - 6 stars on GitHub - 1 maintainer
Top 2.0% on pypi.org
torchio 0.20.7
Tools for medical image processing with PyTorch
259 versions - Latest release: 4 days ago - 19 dependent packages - 79 dependent repositories - 62.5 thousand downloads last month - 2,160 stars on GitHub - 1 maintainer
mrsd 1.0.0
MR sequence diagram toolkit
4 versions - Latest release: about 2 years ago - 1 dependent repositories - 171 downloads last month - 14 stars on GitHub - 1 maintainer
petu 0.0.4
pediatric brain tumor segmentation models
4 versions - Latest release: 2 days ago - 74 downloads last month - 1 stars on GitHub - 2 maintainers
populse-mia 2.6.0
populse_mia
19 versions - Latest release: 10 days ago - 1 dependent package - 1 dependent repositories - 633 downloads last month - 0 stars on GitHub - 3 maintainers
brainles-preprocessing 0.3.5
Tool for preprocessing tasks in biomedical imaging, with a focus on (but not limited to) multi-mo...
38 versions - Latest release: 2 days ago - 749 downloads last month - 18 stars on GitHub - 1 maintainer
fmri-physio-log 0.3.3 💰
Parse Siemens PMU files
11 versions - Latest release: 10 months ago - 1 dependent repositories - 419 downloads last month - 9 stars on GitHub - 1 maintainer
erwin 1.3.0
Toolbox to generate quantitative maps from MRI images
8 versions - Latest release: 4 months ago - 1 dependent repositories - 284 downloads last month - 12 stars on GitHub - 1 maintainer
bidskit 2025.1.30 💰
BIDS curation toolkit
33 versions - Latest release: 2 months ago - 1 dependent repositories - 1.31 thousand downloads last month - 62 stars on GitHub - 1 maintainer
gasp-ssfp 0.0.2
Generation of Arbitary Spectral Profiles using bSSFp MRI
2 versions - Latest release: 4 months ago - 106 downloads last month - 2 stars on GitHub - 1 maintainer
mct 0.3.2
The MRI Coil-reconstruct Toolbox
17 versions - Latest release: about 5 years ago - 1 dependent repositories - 568 downloads last month - 15 stars on GitHub - 1 maintainer
hippunfold 0.5.11
Snakemake BIDS app for hippocampal unfolding & subfield segmentation
3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 128 downloads last month - 57 stars on GitHub - 1 maintainer
brkbart 0.0.3
Bart-tool wrapping for Bruker PvDataset
2 versions - Latest release: over 2 years ago - 62 downloads last month - 1 maintainer
pathmatcher 1.8.8
Regular Expression Path Matcher - Easily batch manipulate folders and files trees with regular ex...
10 versions - Latest release: 3 months ago - 1 dependent repositories - 383 downloads last month - 4 stars on GitHub - 1 maintainer
mrbabel-data 1.0.1
Example dataset for demo and testing of mrbabel package.
2 versions - Latest release: 4 months ago - 95 downloads last month - 1 maintainer
d2b 1.4.2
Organize data in the BIDS format
21 versions - Latest release: over 2 years ago - 6 dependent repositories - 579 downloads last month - 0 stars on GitHub - 1 maintainer
hurahura 0.1.12
Medical Imaginging Research structuring and automation
13 versions - Latest release: 4 days ago - 1.09 thousand downloads last month - 0 stars on GitHub - 1 maintainer
ssfp 1.2.0
SSFP simulation
11 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 7.59 thousand downloads last month - 8 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
phantominator 0.7.0
Generate numerical phantoms.
28 versions - Latest release: about 2 years ago - 5 dependent packages - 10 dependent repositories - 7.73 thousand downloads last month - 39 stars on GitHub - 1 maintainer
lesion-metrics 0.1.12
metrics for evaluating lesion segmentations
13 versions - Latest release: about 3 years ago - 1 dependent repositories - 562 downloads last month - 2 stars on GitHub - 1 maintainer
brainweb 1.6.2 💰
BrainWeb-based multimodal models of 20 normal brains
18 versions - Latest release: over 4 years ago - 1 dependent package - 3 dependent repositories - 659 downloads last month - 27 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
sigpy 0.1.27
Python package for signal processing, with emphasis on iterative methods
36 versions - Latest release: 3 months ago - 5 dependent packages - 25 dependent repositories - 7.31 thousand downloads last month - 309 stars on GitHub - 3 maintainers
totalspineseg 20250224 💰
TotalSpineSeg is a tool for automatic instance segmentation and labeling of all vertebrae, interv...
12 versions - Latest release: about 2 months ago - 6.85 thousand downloads last month - 48 stars on GitHub - 1 maintainer
Top 6.4% on pypi.org
pypulseq 1.4.2
Pulseq in Python
11 versions - Latest release: 10 months ago - 4 dependent packages - 5 dependent repositories - 2.94 thousand downloads last month - 148 stars on GitHub - 1 maintainer
nii2dcm 0.1.5
nii2dcm: NIfTI to DICOM creation with Python
4 versions - Latest release: about 1 year ago - 1 dependent repositories - 378 downloads last month - 68 stars on GitHub - 1 maintainer
django-mri 0.0.4
A reusable Django app to manage MRI data.
4 versions - Latest release: over 5 years ago - 1 dependent repositories - 186 downloads last month - 8 stars on GitHub - 1 maintainer
django-dicom 0.0.4
A simple Django app to manage DICOM files.
4 versions - Latest release: over 5 years ago - 1 dependent repositories - 202 downloads last month - 6 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
sycomore 1.3.2
MRI simulation toolkit
14 versions - Latest release: over 3 years ago - 1 dependent package - 2 dependent repositories - 1.61 thousand downloads last month - 30 stars on GitHub - 1 maintainer
pymialsrtk 2.1.0
PyMIALSRTK: Nipype pipelines for the MIAL Super Resolution Toolkit
4 versions - Latest release: over 2 years ago - 1 dependent repositories - 143 downloads last month - 29 stars on GitHub - 1 maintainer
graymatter_swissknife 1.4.3
Gray Matter Swiss Knife : Generalized Exchange Model estimators for diffusion MRI
37 versions - Latest release: 5 days ago - 1.68 thousand downloads last month - 2 stars on GitHub - 1 maintainer
pylaynii 0.0.0
Layer-MRI analysis in python.
1 version - Latest release: about 5 years ago - 1 dependent repositories - 31 downloads last month - 5 stars on GitHub - 1 maintainer
m2g 0.3.0
Neuro Data MRI to Graphs Pipeline
1 version - Latest release: about 5 years ago - 1 dependent repositories - 65 downloads last month - 59 stars on GitHub - 1 maintainer
ndmg 0.2.1
Neuro Data MRI to Graphs Pipeline
79 versions - Latest release: over 5 years ago - 2 dependent repositories - 1.68 thousand downloads last month - 59 stars on GitHub - 2 maintainers
jurt 1.0.2
Jeff's Unified Registration Tool
8 versions - Latest release: over 6 years ago - 1 dependent repositories - 187 downloads last month - 1 maintainer
Top 7.8% on pypi.org
mriqc 24.0.2
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and ...
117 versions - Latest release: 8 months ago - 2 dependent repositories - 1.76 thousand downloads last month - 316 stars on GitHub - 5 maintainers
hart-amsaf 0.0.4
The HART Lab Automated MRI Segmentation and Analysis Framework
4 versions - Latest release: over 7 years ago - 1 dependent repositories - 181 downloads last month - 0 stars on GitHub - 1 maintainer
ndicom-region-growing 0.0.1.dev0
Neurdicom plugins
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 51 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-fcm 0.0.1.dev2
Neurdicom plugins
3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 139 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-meanshift 0.0.1.dev1
Neurdicom plugins
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 58 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-improved-kmeans 0.0.1.dev0
Neurdicom plugins
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 56 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-kmeans 0.0.1.dev0
Neurdicom plugins
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 55 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-gauss-kernel-kmeans 0.0.1.dev0
Neurdicom plugins
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 56 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-cuda-kmeans 0.0.1.dev1
Neurdicom plugins
2 versions - Latest release: almost 7 years ago - 1 dependent repositories - 89 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-gaussian-mixture 0.0.1.dev1
Neurdicom plugins
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 58 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-kernel-kmeans 0.0.1.dev0
Neurdicom plugins
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 54 downloads last month - 3 stars on GitHub - 1 maintainer
deepparcellation 1.0.35
DeepParcellation: fast and accurate brain MRI parcellation by deep learning
36 versions - Latest release: over 3 years ago - 1 dependent repositories - 595 downloads last month - 5 stars on GitHub - 1 maintainer
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data
13 versions - Latest release: about 2 years ago - 2 dependent packages - 2 dependent repositories - 498 downloads last month - 22 stars on GitHub - 1 maintainer
phase-unwrap 2.0.0
A simple, laplacian-based unwrapping pipeline for MRI phase images in Python.
1 version - Latest release: 10 months ago - 76 downloads last month - 4 stars on GitHub - 1 maintainer
ndicom-thresholding 0.0.1.dev1
Neurdicom plugins
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 54 downloads last month - 3 stars on GitHub - 1 maintainer
nipype-generate-fieldmaps 0.2.4 💰
Nipype workflow to generate fieldmaps from EPI acquisitions with differing phase-encoding directions
6 versions - Latest release: about 3 years ago - 1 dependent repositories - 199 downloads last month - 1 stars on GitHub - 1 maintainer
deepneuroseg 0.4
Deep-learning Tool for White Matter (WM) lesions and Claustrum structure segmentation in brain ma...
4 versions - Latest release: almost 4 years ago - 1 dependent repositories - 92 downloads last month - 5 stars on GitHub - 1 maintainer
atommic 1.0.1
Advanced Toolbox for Multitask Medical Imaging Consistency (ATOMMIC)
2 versions - Latest release: 12 months ago - 99 downloads last month - 13 stars on GitHub - 1 maintainer
pygrappa 0.26.3
GeneRalized Autocalibrating Partially Parallel Acquisitions.
58 versions - Latest release: 7 months ago - 1 dependent repositories - 2.13 thousand downloads last month - 1 maintainer
ktblast 0.1.0
Python implementation of the k-t BLAST algorithm.
1 version - Latest release: over 5 years ago - 1 dependent repositories - 46 downloads last month - 3 stars on GitHub - 1 maintainer
nexi 1.0.7
Neurite Exchange Imaging (NEXI) model estimator for diffusion MRI
10 versions - Latest release: over 1 year ago - 338 downloads last month - 3 stars on GitHub - 1 maintainer
dicom2cloud 0.9
Platform independent GUI for anonymizing/uploading brain scans to an image processing cloud instance
2 versions - Latest release: over 7 years ago - 1 dependent repositories - 65 downloads last month - 0 stars on GitHub - 1 maintainer
designer2 2.0.12
designerV2
40 versions - Latest release: 8 days ago - 763 downloads last month - 18 stars on GitHub - 3 maintainers
qipype 3.2
nipype interfaces to QUantitative Imaging Tools
3 versions - Latest release: about 4 years ago - 1 dependent repositories - 71 downloads last month - 62 stars on GitHub - 1 maintainer
virtual-scanner 2.0.0
Virtual Scanner educational tool for MRI
14 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 603 downloads last month - 60 stars on GitHub - 1 maintainer
mrdataset 0.4.4
MRdataset
7 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 260 downloads last month - 1 stars on GitHub - 1 maintainer
macapype 0.5.6
Pipeline for anatomic processing for macaque
70 versions - Latest release: 12 days ago - 1 dependent package - 1 dependent repositories - 2.78 thousand downloads last month - 22 stars on GitHub - 1 maintainer
deepsurfer 0.1.1a5
Learning-Based Utilities for Neuroimage Analysis
7 versions - Latest release: 9 months ago - 403 downloads last month - 2 maintainers
tfce-mediation 1.5.3
TFCE_mediation
37 versions - Latest release: over 6 years ago - 1 dependent repositories - 705 downloads last month - 30 stars on GitHub - 2 maintainers
d2b-asl 2.0.1
Plugin for the d2b package to handle ASL data
4 versions - Latest release: 11 months ago - 1 dependent repositories - 133 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
bidscoin 4.6.1
Converts and organises raw MRI data-sets according to the Brain Imaging Data Structure (BIDS)
39 versions - Latest release: 22 days ago - 2 dependent repositories - 1.92 thousand downloads last month - 137 stars on GitHub - 1 maintainer
mriqa 0.2.15
Tools for MRI QA
2 versions - Latest release: 11 months ago - 84 downloads last month - 1 maintainer
cartimorph-vxm 0.9.1
Image Registration with Convolutional Networks tailored for the CartiMorph framework
6 versions - Latest release: almost 2 years ago - 49 downloads last month - 1 stars on GitHub - 1 maintainer
Top 4.5% on pypi.org
fastmri 0.3.0
A large-scale dataset of both raw MRI measurements and clinical MRI images.
4 versions - Latest release: almost 2 years ago - 1 dependent package - 6 dependent repositories - 9.77 thousand downloads last month - 1,364 stars on GitHub - 2 maintainers
react-fmri 0.1.7
A Python package that implements REACT: Receptor-Enriched Analysis of Functional Connectivity by ...
10 versions - Latest release: over 2 years ago - 1 dependent repositories - 339 downloads last month - 16 stars on GitHub - 2 maintainers
dmri-rcnn 0.4.2
Diffusion MRI Recurrent CNN for Angular Super-resolution.
8 versions - Latest release: 2 months ago - 1 dependent repositories - 238 downloads last month - 18 stars on GitHub - 1 maintainer
tensorflow-mri 0.22.0
A collection of TensorFlow add-ons for computational MRI.
30 versions - Latest release: over 2 years ago - 1 dependent repositories - 1.1 thousand downloads last month - 40 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
voxelmorph 0.2
Image Registration with Convolutional Networks
2 versions - Latest release: almost 3 years ago - 6 dependent repositories - 8.82 thousand downloads last month - 2,233 stars on GitHub - 1 maintainer
pydcm2niix 1.0.20220116
DCM2NIIX Python package
2 versions - Latest release: over 3 years ago - 1 dependent repositories - 71 downloads last month - 814 stars on GitHub - 1 maintainer
Top 4.8% on pypi.org
smriprep 0.17.0
Structural MRI Preprocessing Pipelines
69 versions - Latest release: 4 months ago - 2 dependent packages - 14 dependent repositories - 4.22 thousand downloads last month - 139 stars on GitHub - 4 maintainers
smriprep-docker 0.17.0
A wrapper for generating Docker commands using regular sMRIPrep syntax
43 versions - Latest release: 4 months ago - 1 dependent repositories - 959 downloads last month - 139 stars on GitHub - 4 maintainers
pulserver 0.1.12
A PyPulseq-based client/server MR sequence design toolbox.
13 versions - Latest release: 6 months ago - 318 downloads last month - 2 stars on GitHub - 1 maintainer
torchsim 0.0.3
A feature-rich MR simulator supporting massive parallelization on GPU and automatic differentiation.
1 version - Latest release: 5 months ago - 49 downloads last month - 1 stars on GitHub - 1 maintainer
dwilib 0.1.8.dev0
Research tools for MRI-based CAD of cancer
10 versions - Latest release: over 6 years ago - 1 dependent repositories - 264 downloads last month - 9 stars on GitHub - 1 maintainer
nigsp 0.19.0
A python library (and toolbox!) to run Graph Signal Processing on multimodal MRI data.
32 versions - Latest release: 12 months ago - 1 dependent repositories - 701 downloads last month - 20 stars on GitHub - 1 maintainer
dicom-parser 1.2.3
DICOM files parser meant to facilitate data access.
15 versions - Latest release: over 2 years ago - 3 dependent packages - 1 dependent repositories - 1.95 thousand downloads last month - 0 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
pydra-dcm2niix 1.2.1
pydra-dcm2niix contains Pydra task specifications for the Dcm2niix converter
10 versions - Latest release: almost 2 years ago - 3 dependent packages - 2 dependent repositories - 1.18 thousand downloads last month - 814 stars on GitHub - 2 maintainers
mridatapy 0.0.6
A lightweight toolbox for downloading and processing mridata from mridata.org
6 versions - Latest release: about 4 years ago - 1 dependent repositories - 220 downloads last month - 2 stars on GitHub - 1 maintainer
Top 8.6% on pypi.org
dosma 0.1.2
An AI-powered open-source medical image analysis toolbox
9 versions - Latest release: about 3 years ago - 2 dependent packages - 4 dependent repositories - 977 downloads last month - 62 stars on GitHub - 1 maintainer
Top 7.5% on pypi.org
torchkbnufft 1.5.2
A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.
21 versions - Latest release: 5 months ago - 3 dependent packages - 3 dependent repositories - 2.89 thousand downloads last month - 225 stars on GitHub - 1 maintainer
osipi 0.1.2
The authorative python package for perfusion MRI
3 versions - Latest release: over 1 year ago - 122 downloads last month - 6 stars on GitHub - 2 maintainers
meddlr 0.0.9
Meddlr is a config-driven framework built to simplify ML-based medical image reconstruction and a...
18 versions - Latest release: over 1 year ago - 2 dependent packages - 1 dependent repositories - 965 downloads last month - 62 stars on GitHub - 1 maintainer
mssfp 0.0.6
mSSFP is library for image reconstuction for multi-acqusition SSFP
6 versions - Latest release: 24 days ago - 369 downloads last month - 1 stars on GitHub - 1 maintainer
dwiprep 0.1.5
DWIprep is a robust and easy-to-use preprocessing pipeline for diffusion-weighted imaging of vari...
1 version - Latest release: over 3 years ago - 2 dependent repositories - 42 downloads last month - 1 stars on GitHub - 1 maintainer
convert-source 0.1.1
Converts and organises source MR image data-sets in accordance with the Brain Imaging Data Struct...
15 versions - Latest release: about 4 years ago - 1 dependent repositories - 724 downloads last month - 1 stars on GitHub - 1 maintainer
t2stimulate 0.1.0
MRI T2 decay curve simulation with imperfect excitation pulse (B1)
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 37 downloads last month - 0 stars on GitHub - 1 maintainer
pulseclient 0.1.0
A Python client for communication between Pulseq interpreter and Pulseq design server.
1 version - Latest release: 7 months ago - 49 downloads last month - 0 stars on GitHub - 1 maintainer
unravel-python 1.6.4
Implementation of UNRAVEL
56 versions - Latest release: about 1 month ago - 1 dependent repositories - 1.57 thousand downloads last month - 22 stars on GitHub - 1 maintainer
brainweb-dl 0.4.3
Download BrainWeb MRI data
15 versions - Latest release: about 2 months ago - 2 dependent packages - 711 downloads last month - 5 stars on GitHub - 1 maintainer