Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "pathology" keyword
panoptes-he 0.1.17
A multi-resolution CNN to predict cancer histopathologic features19 versions - Latest release: over 2 years ago - 1 dependent repositories - 131 downloads last month - 2 stars on GitHub - 2 maintainers
slideflow 2.3.1
Deep learning tools for digital histology58 versions - Latest release: 4 months ago - 1 dependent repositories - 683 downloads last month - 218 stars on GitHub - 1 maintainer
Top 9.1% on pypi.org
33 versions - Latest release: about 2 months ago - 6 dependent repositories - 4.92 thousand downloads last month - 40 stars on GitHub - 1 maintainer
slideio 2.5.0
Reading of medical images33 versions - Latest release: about 2 months ago - 6 dependent repositories - 4.92 thousand downloads last month - 40 stars on GitHub - 1 maintainer
pma-python 2.0.0.177
Universal viewing of digital microscopy, whole slide imaging and digital pathology data108 versions - Latest release: about 2 months ago - 1 dependent repositories - 439 downloads last month - 27 stars on GitHub - 2 maintainers
pathml 2.1.1
Tools for computational pathology15 versions - Latest release: 12 months ago - 1 dependent repositories - 283 downloads last month - 360 stars on GitHub - 4 maintainers
slidl 0.1.dev4
SliDL: a Python library of pre- and post-processing tools for applying deep learning to whole-sli...1 version - Latest release: about 2 years ago - 1 dependent repositories - 107 downloads last month - 11 stars on GitHub - 2 maintainers
pymut 0.1.1
Machine learning methods for the prediction of pathology in protein mutations, as in the PMut pre...1 version - Latest release: about 7 years ago - 1 dependent repositories - 15 downloads last month - 6 stars on GitHub - 2 maintainers
Top 7.3% on pypi.org
20 versions - Latest release: 3 months ago - 2 dependent repositories - 825 downloads last month - 339 stars on GitHub - 3 maintainers
histolab 0.7.0 💰
Python library for Digital Pathology Image Processing20 versions - Latest release: 3 months ago - 2 dependent repositories - 825 downloads last month - 339 stars on GitHub - 3 maintainers
bipl 0.5.6
Openslide/libtiff/GDAL ndarray-like interface and lazy parallel tile-based processing28 versions - Latest release: 28 days ago - 136 downloads last month - 3 stars on GitHub - 2 maintainers
answer 0.1
Brazilian Agricultural Research Corporation (EMBRAPA) fully annotated dataset for plant diseases....1 version - Latest release: about 5 years ago - 2 dependent repositories - 108 downloads last month - 40 stars on GitHub - 1 maintainer
tissueloc 2.1.0
Localize the tissue regions in whole slide pathology images.3 versions - Latest release: about 4 years ago - 1 dependent package - 1 dependent repositories - 51 downloads last month - 44 stars on GitHub - 2 maintainers
digipathos 0.2.4
Brazilian Agricultural Research Corporation (EMBRAPA) fully annotated dataset for plant diseases....6 versions - Latest release: about 5 years ago - 1 dependent repositories - 62 downloads last month - 39 stars on GitHub - 2 maintainers
cg-gnn 0.3.2
Train a graph neural network on cell graphs.14 versions - Latest release: 4 months ago - 1 dependent package - 17 downloads last month - 4 stars on GitHub - 1 maintainer
plant-pathology 0.0.3
My submission the (completed) Plant Pathology 2020 competition on Kaggle.3 versions - Latest release: about 3 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 2 maintainers
histoprep 2.0.5
Read and process histological slide images with python!55 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 612 downloads last month - 15 stars on GitHub - 1 maintainer
pyluna 0.3.3
Transformation functions and services for multi-modal oncology data11 versions - Latest release: about 2 years ago - 1 dependent repositories - 88 downloads last month - 32 stars on GitHub - 4 maintainers
pyluna-common 0.3.3
Transformation functions and services for multi-modal oncology data12 versions - Latest release: about 2 years ago - 1 dependent repositories - 145 downloads last month - 32 stars on GitHub - 4 maintainers
pyluna-radiology 0.3.3
Transformation functions and services for multi-modal oncology data12 versions - Latest release: about 2 years ago - 1 dependent repositories - 97 downloads last month - 32 stars on GitHub - 2 maintainers
pyluna-pathology 0.3.3
Transformation functions and services for multi-modal oncology data12 versions - Latest release: about 2 years ago - 1 dependent repositories - 134 downloads last month - 32 stars on GitHub - 2 maintainers
pyluna-core 0.3.3
Transformation functions and services for multi-modal oncology data12 versions - Latest release: about 2 years ago - 1 dependent repositories - 91 downloads last month - 32 stars on GitHub - 4 maintainers
validpath 0.0.5
Processing Digital Pathology Data4 versions - Latest release: 4 months ago - 36 downloads last month - 0 stars on GitHub - 2 maintainers
pyslide 0.5.0
Python whole slide image analysis toolkit9 versions - Latest release: about 1 year ago - 3 dependent repositories - 136 downloads last month - 48 stars on GitHub - 2 maintainers
pamly 0.2.5
Command line interface for digital pathology tools.13 versions - Latest release: about 2 months ago - 3.57 thousand downloads last month - 0 stars on GitHub - 2 maintainers
wsinfer 0.6.1
Run patch-based classification on pathology whole slide images.12 versions - Latest release: 3 months ago - 133 downloads last month - 50 stars on GitHub - 2 maintainers
deepliif 1.1.10
DeepLIIF: Deep-Learning Inferred Multiplex Immunofluorescence for Immunohistochemical Image Quant...9 versions - Latest release: 16 days ago - 1 dependent repositories - 88 downloads last month - 132 stars on GitHub - 2 maintainers
bio2bel-adeptus 0.0.1
Bio2BEL ADEPTUS.1 version - Latest release: over 5 years ago - 1 dependent repositories - 15 downloads last month - 1 stars on GitHub - 2 maintainers
wholeslidedata 0.0.16
A package for working with whole-slide data including a fast batch iterator that can be used to t...16 versions - Latest release: over 1 year ago - 1 dependent repositories - 116 downloads last month - 73 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
8 versions - Latest release: over 2 years ago - 3 dependent repositories - 132 downloads last month - 220 stars on GitHub - 1 maintainer
histocartography 0.2.1
Installable histocartography package.8 versions - Latest release: over 2 years ago - 3 dependent repositories - 132 downloads last month - 220 stars on GitHub - 1 maintainer
Top 5.6% on pypi.org
1 version - Latest release: over 1 year ago
cg-gnns 0.1.0 removed
Create cell graphs from pathology slide data and train a graph neural network to predict patient ...1 version - Latest release: over 1 year ago
Related Keywords
python
10
deep-learning
8
clinical
5
computational-pathology
5
radiology
5
machine-learning
5
whole-slide-imaging
5
pathology-image
4
wsi
4
pytorch
4
histopathology
3
microscopy
2
digital-pathology
2
image-analysis
2
research
2
gnn
2
wrapper
2
plant-pathology
2
plant-disease
2
open-data
2
dataset
2
openslide
2
images
2
cancer
2
slide
2
medical
2
svs
2
ndpi
2
histology
2
slide-image
1
tissue-analysis
1
tissue-classification
1
plant
1
whole slide
1
image
1
WSI
1
medical image
1
classification
1
DeepLIIF
1
kaggle
1
leaves
1
preprocess
1
deep
1
medical-imaging
1
learning
1
medical-image-processing
1
AI
1
medical-image-analysis
1
histological-slides
1
cut
1
histological-images
1
healthcare
1
graph-neural-networks
1
wsm
1
wsd
1
wsa
1
whole-slide-mask
1
whole-slide-image
1
whole-slide-dataset
1
whole-slide-data
1
whole-slide-annotation
1
iterator
1
gene-expression
1
differential-gene-expression
1
biological-expression-language
1
Bio2BEL
1
Biological Expression Language
1
segmentation
1
pathology-gan
1
multitask-learning
1
multiplex
1
immunohistochemistry
1
immunohistochemical-images
1
image-segmentation
1
datasets
1
cloud-native-applications
1
cell-segmentation
1
cell-biology
1
ai-ready
1
Classification
1
Segmentation
1
IHC
1
bigtiff
1
batch
1
aperio
1
science-research
1
hacktoberfest
1
digital-pathology-data
1
data-science
1
biology
1
bioinformatics
1
protein-mutations
1
machine learning
1
mutations
1
protein
1
deep learning
1
ai
1
spatial-transcriptomics
1
pathml
1
fluorescence-microscopy-imaging
1