Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "mri" keyword

airflow-imaging-plugins 2.4.3
Airflow plugins to support Neuroimaging tasks.
43 versions - Latest release: over 6 years ago - 1 dependent repositories - 219 downloads last month - 15 stars on GitHub - 2 maintainers
atommic 1.0.1
Advanced Toolbox for Multitask Medical Imaging Consistency (ATOMMIC)
2 versions - Latest release: 21 days ago - 208 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
bidscoin 4.3.2
Converts and organises raw MRI data-sets according to the Brain Imaging Data Structure (BIDS)
34 versions - Latest release: about 2 months ago - 2 dependent repositories - 484 downloads last month - 117 stars on GitHub - 1 maintainer
bids-derivatives 0.0.1
Python package for querying BIDS Apps` processed derivatives.
2 versions - Latest release: almost 2 years ago - 25 downloads last month - 2 stars on GitHub - 1 maintainer
bidskit 2024.5.3 💰
BIDS curation toolkit
29 versions - Latest release: 19 days ago - 1 dependent repositories - 302 downloads last month - 59 stars on GitHub - 1 maintainer
brainles-aurora 0.2.4
Segmentation models for cancer metastasis in brain MR.
19 versions - Latest release: about 1 month ago - 198 downloads last month - 3 stars on GitHub - 2 maintainers
brainload 0.3.5 💰
Load FreeSurfer brain imaging data with minimal cognitive load.
8 versions - Latest release: over 4 years ago - 2 dependent repositories - 64 downloads last month - 9 stars on GitHub - 1 maintainer
brainsprite 0.14.2 💰
Python API for the brainsprite MRI brain viewer
3 versions - Latest release: about 4 years ago - 1 dependent repositories - 46 downloads last month - 37 stars on GitHub - 1 maintainer
brainweb 1.6.2 💰
BrainWeb-based multimodal models of 20 normal brains
18 versions - Latest release: over 3 years ago - 1 dependent package - 3 dependent repositories - 245 downloads last month - 27 stars on GitHub - 1 maintainer
brainweb-dl 0.2.1
Download BrainWeb MRI data
9 versions - Latest release: 3 months ago - 2 dependent packages - 246 downloads last month - 5 stars on GitHub - 1 maintainer
brats-toolkit 1.0.16
BraTS Toolkit is a holistic approach to brain tumor segmentation allowing to build modular pipeli...
18 versions - Latest release: 3 months ago - 76 downloads last month - 68 stars on GitHub - 2 maintainers
brkbart 0.0.3
Bart-tool wrapping for Bruker PvDataset
2 versions - Latest release: over 1 year ago - 22 downloads last month - 1 maintainer
cartimorph-vxm 0.9.1
Image Registration with Convolutional Networks tailored for the CartiMorph framework
6 versions - Latest release: 10 months ago - 19 downloads last month - 0 stars on GitHub - 1 maintainer
convert-source 0.1.1
Converts and organises source MR image data-sets in accordance with the Brain Imaging Data Struct...
15 versions - Latest release: about 3 years ago - 1 dependent repositories - 199 downloads last month - 1 stars on GitHub - 1 maintainer
d2b 1.4.2
Organize data in the BIDS format
21 versions - Latest release: almost 2 years ago - 6 dependent repositories - 215 downloads last month - 0 stars on GitHub - 1 maintainer
d2b-asl 2.0.0
Plugin for the d2b package to handle ASL data
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 1 maintainer
data-tracking 1.7.3
Extract meta-data from DICOM and NIFTI files
20 versions - Latest release: almost 6 years ago - 2 dependent repositories - 153 downloads last month - 4 stars on GitHub - 2 maintainers
Top 4.4% on pypi.org
dcm2niix 1.0.20220715
DCM2NIIX Python package
2 versions - Latest release: almost 2 years ago - 8 dependent packages - 3 dependent repositories - 5.89 thousand downloads last month - 811 stars on GitHub - 1 maintainer
deepinv 0.2.0
Pytorch library for solving inverse problems with deep learning
5 versions - Latest release: 30 days ago - 1 dependent repositories - 407 downloads last month - 223 stars on GitHub - 1 maintainer
deepmri 0.0.1
A deep learning toolbox for parallel MRI reconstruction
1 version - Latest release: about 3 years ago - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 1 maintainer
deepneuro 0.2.3
DeepNeuro: A deep learning python package for neuroimaging data.
6 versions - Latest release: almost 5 years ago - 1 dependent repositories - 51 downloads last month - 121 stars on GitHub - 2 maintainers
deepneuroseg 0.4
Deep-learning Tool for White Matter (WM) lesions and Claustrum structure segmentation in brain ma...
4 versions - Latest release: almost 3 years ago - 1 dependent repositories - 16 downloads last month - 4 stars on GitHub - 1 maintainer
deepparcellation 1.0.35
DeepParcellation: fast and accurate brain MRI parcellation by deep learning
36 versions - Latest release: over 2 years ago - 1 dependent repositories - 115 downloads last month - 3 stars on GitHub - 1 maintainer
deepsurfer 0.1.1a4
Learning-Based Utilities for Neuroimage Analysis
6 versions - Latest release: 3 months ago - 381 downloads last month - 2 maintainers
designer2 2.0.7
designerV2
35 versions - Latest release: about 2 months ago - 166 downloads last month - 11 stars on GitHub - 3 maintainers
dicom2cloud 0.9
Platform independent GUI for anonymizing/uploading brain scans to an image processing cloud instance
2 versions - Latest release: over 6 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 1 maintainer
dicom-parser 1.2.3
DICOM files parser meant to facilitate data access.
15 versions - Latest release: almost 2 years ago - 3 dependent packages - 1 dependent repositories - 947 downloads last month - 0 stars on GitHub - 1 maintainer
Top 1.4% on pypi.org
dipy 1.9.0
Diffusion MRI Imaging in Python
27 versions - Latest release: 3 months ago - 46 dependent packages - 204 dependent repositories - 29.2 thousand downloads last month - 651 stars on GitHub - 4 maintainers
django-dicom 0.0.4
A simple Django app to manage DICOM files.
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 64 downloads last month - 6 stars on GitHub - 1 maintainer
django-mri 0.0.4
A reusable Django app to manage MRI data.
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 48 downloads last month - 7 stars on GitHub - 1 maintainer
dmri-pcconv 1.0.0
Parametric Continuous Convolution framework used for Diffusion MRI.
1 version - Latest release: 6 months ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
dmri-rcnn 0.4.1
Diffusion MRI Recurrent CNN for Angular Super-resolution.
7 versions - Latest release: 6 months ago - 1 dependent repositories - 53 downloads last month - 18 stars on GitHub - 1 maintainer
Top 8.6% on pypi.org
dosma 0.1.2
An AI-powered open-source medical image analysis toolbox
9 versions - Latest release: about 2 years ago - 2 dependent packages - 4 dependent repositories - 214 downloads last month - 53 stars on GitHub - 1 maintainer
dwilib 0.1.8.dev0
Research tools for MRI-based CAD of cancer
10 versions - Latest release: over 5 years ago - 1 dependent repositories - 120 downloads last month - 8 stars on GitHub - 1 maintainer
dwiprep 0.1.5
DWIprep is a robust and easy-to-use preprocessing pipeline for diffusion-weighted imaging of vari...
1 version - Latest release: almost 3 years ago - 2 dependent repositories - 26 downloads last month - 1 stars on GitHub - 1 maintainer
erwin 1.2.0
Toolbox to generate quantitative maps from MRI images
7 versions - Latest release: 10 months ago - 1 dependent repositories - 54 downloads last month - 10 stars on GitHub - 1 maintainer
Top 4.5% on pypi.org
fastmri 0.3.0
A large-scale dataset of both raw MRI measurements and clinical MRI images.
4 versions - Latest release: 11 months ago - 1 dependent package - 6 dependent repositories - 883 downloads last month - 1,239 stars on GitHub - 2 maintainers
fmri-physio-log 0.3.2 💰
Parse Siemens PMU files
10 versions - Latest release: 4 months ago - 1 dependent repositories - 83 downloads last month - 9 stars on GitHub - 1 maintainer
Top 5.3% on pypi.org
fsleyes 1.12.0
FSLeyes, the FSL image viewer
114 versions - Latest release: 15 days ago - 1 dependent package - 4 dependent repositories - 1.33 thousand downloads last month - 811 stars on GitHub - 1 maintainer
fsleyes-plugin-mrs 0.1.2
FSLeyes extension for viewing MRS(I) data formatted as NIfTI-MRS.
7 versions - Latest release: 6 months ago - 1 dependent repositories - 60 downloads last month - 11 stars on GitHub - 1 maintainer
Top 2.5% on pypi.org
fslpy 3.18.2
FSL Python library
115 versions - Latest release: about 2 months ago - 9 dependent packages - 18 dependent repositories - 3.53 thousand downloads last month - 811 stars on GitHub - 1 maintainer
graymatter_swissknife 1.2.2
Gray Matter Swiss Knife : Generalized Exchange Model estimators for diffusion MRI
18 versions - Latest release: about 1 month ago - 399 downloads last month - 1 stars on GitHub - 1 maintainer
gt-twixtools 1.0.1
file reader for Siemens twix(.dat)-files
2 versions - Latest release: 4 months ago - 25 downloads last month - 62 stars on GitHub - 1 maintainer
hart-amsaf 0.0.4
The HART Lab Automated MRI Segmentation and Analysis Framework
4 versions - Latest release: over 6 years ago - 1 dependent repositories - 39 downloads last month - 0 stars on GitHub - 1 maintainer
hippunfold 0.5.11
Snakemake BIDS app for hippocampal unfolding & subfield segmentation
3 versions - Latest release: almost 3 years ago - 1 dependent repositories - 22 downloads last month - 45 stars on GitHub - 1 maintainer
hsf 1.2.1
A simple yet exhaustive segmentation tool of the Hippocampal Subfields in T1w and T2w MRIs.
11 versions - Latest release: about 2 months ago - 1 dependent repositories - 186 downloads last month - 5 stars on GitHub - 2 maintainers
imaging-research 0.1.1
Medical Imaginging Research structuring and automation
17 versions - Latest release: 22 days ago - 193 downloads last month - 0 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
intensity-normalization 2.2.4
normalize the intensities of various MR image modalities
16 versions - Latest release: 12 months ago - 1 dependent package - 2 dependent repositories - 280 downloads last month - 295 stars on GitHub - 1 maintainer
iphigen 1.0.0
Retinex & color balance algorithms for image enhancement.
1 version - Latest release: over 5 years ago - 1 dependent repositories - 19 downloads last month - 22 stars on GitHub - 1 maintainer
jurt 1.0.2
Jeff's Unified Registration Tool
8 versions - Latest release: over 5 years ago - 1 dependent repositories - 29 downloads last month - 1 maintainer
kamui 0.1.1 💰
A Python package for phase unwrapping
2 versions - Latest release: 8 months ago - 33 downloads last month - 13 stars on GitHub - 1 maintainer
ktblast 0.1.0
Python implementation of the k-t BLAST algorithm.
1 version - Latest release: over 4 years ago - 1 dependent repositories - 17 downloads last month - 3 stars on GitHub - 1 maintainer
lesion-metrics 0.1.12
metrics for evaluating lesion segmentations
13 versions - Latest release: over 2 years ago - 1 dependent repositories - 190 downloads last month - 2 stars on GitHub - 1 maintainer
m2g 0.3.0
Neuro Data MRI to Graphs Pipeline
1 version - Latest release: over 4 years ago - 1 dependent repositories - 24 downloads last month - 59 stars on GitHub - 1 maintainer
macapype 0.3.5
Pipeline for anatomic processing for macaque
57 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 148 downloads last month - 19 stars on GitHub - 1 maintainer
mct 0.3.2
The MRI Coil-reconstruct Toolbox
17 versions - Latest release: about 4 years ago - 1 dependent repositories - 190 downloads last month - 14 stars on GitHub - 1 maintainer
meddlr 0.0.9
Meddlr is a config-driven framework built to simplify ML-based medical image reconstruction and a...
18 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 150 downloads last month - 59 stars on GitHub - 1 maintainer
mnisiscom 0.4.0
A simple command line tool and GUI for computing subtraction ictal SPECT coregistered to MRI (SIS...
1 version - Latest release: over 4 years ago - 1 dependent repositories - 18 downloads last month - 3 stars on GitHub - 1 maintainer
mrainet 0.1.0
MR acquisition-invariant network.
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 18 downloads last month - 5 stars on GitHub - 1 maintainer
mrdataset 0.4.4
MRdataset
7 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 76 downloads last month - 1 stars on GitHub - 1 maintainer
mridatapy 0.0.6
A lightweight toolbox for downloading and processing mridata from mridata.org
6 versions - Latest release: about 3 years ago - 1 dependent repositories - 47 downloads last month - 2 stars on GitHub - 1 maintainer
mridc 0.2.0
Data Consistency for Magnetic Resonance Imaging
4 versions - Latest release: over 1 year ago - 1 dependent repositories - 37 downloads last month - 37 stars on GitHub - 1 maintainer
mri-distortionqa 0.8.1 removed
Quality assurance tools for MRI geometric distortion
9 versions - Latest release: almost 2 years ago - 0 stars on
mri-distortion-toolkit 0.14.10
Quality assurance tools for MRI geometric distortion
16 versions - Latest release: 3 months ago - 72 downloads last month - 2 stars on GitHub - 1 maintainer
mriqa
Tools for MRI QA
2 versions - 1 maintainer
Top 7.8% on pypi.org
mriqc 24.0.0
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and ...
114 versions - Latest release: about 1 month ago - 2 dependent repositories - 960 downloads last month - 283 stars on GitHub - 5 maintainers
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data
13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 192 downloads last month - 22 stars on GitHub - 1 maintainer
mrqa 0.2.4
rQA suite of tools offering automatic evaluation of protocol compliance
10 versions - Latest release: 12 months ago - 154 downloads last month - 9 stars on GitHub - 1 maintainer
mrqy 0.0.3
MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance i...
3 versions - Latest release: 3 months ago - 31 downloads last month - 85 stars on GitHub - 1 maintainer
mrsd 1.0.0
MR sequence diagram toolkit
4 versions - Latest release: about 1 year ago - 1 dependent repositories - 42 downloads last month - 11 stars on GitHub - 1 maintainer
mrsprint 1.2.2
Magnetic resonance experiment simulator and visualization tool.
3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 34 downloads last month - 3 stars on GitLab.com - 1 maintainer
multiecho 0.29
Combine multi-echoes from a multi-echo fMRI acquisition.
8 versions - Latest release: 9 months ago - 1 dependent package - 1 dependent repositories - 559 downloads last month - 6 stars on GitHub - 1 maintainer
multipropreg 0.1.1
Image registration network using deformation field
2 versions - Latest release: 7 months ago - 12 downloads last month - 0 stars on GitHub - 1 maintainer
ndicom-cuda-kmeans 0.0.1.dev1
Neurdicom plugins
2 versions - Latest release: almost 6 years ago - 1 dependent repositories - 15 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-fcm 0.0.1.dev2
Neurdicom plugins
3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 27 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-gaussian-mixture 0.0.1.dev1
Neurdicom plugins
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 18 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-gauss-kernel-kmeans 0.0.1.dev0
Neurdicom plugins
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 16 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-improved-kmeans 0.0.1.dev0
Neurdicom plugins
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 13 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-kernel-kmeans 0.0.1.dev0
Neurdicom plugins
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 20 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-kmeans 0.0.1.dev0
Neurdicom plugins
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 13 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-meanshift 0.0.1.dev1
Neurdicom plugins
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 16 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-region-growing 0.0.1.dev0
Neurdicom plugins
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 14 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-thresholding 0.0.1.dev1
Neurdicom plugins
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 14 downloads last month - 3 stars on GitHub - 1 maintainer
ndmg 0.2.1
Neuro Data MRI to Graphs Pipeline
79 versions - Latest release: almost 5 years ago - 2 dependent repositories - 166 downloads last month - 59 stars on GitHub - 2 maintainers
nexi 1.0.7
Neurite Exchange Imaging (NEXI) model estimator for diffusion MRI
10 versions - Latest release: 9 months ago - 72 downloads last month - 2 stars on GitHub - 1 maintainer
nigsp 0.19.0
A python library (and toolbox!) to run Graph Signal Processing on multimodal MRI data.
32 versions - Latest release: 28 days ago - 1 dependent repositories - 409 downloads last month - 16 stars on GitHub - 1 maintainer
nii2dcm 0.1.5
nii2dcm: NIfTI to DICOM creation with Python
4 versions - Latest release: 3 months ago - 1 dependent repositories - 404 downloads last month - 46 stars on GitHub - 1 maintainer
nipype-generate-fieldmaps 0.2.4 💰
Nipype workflow to generate fieldmaps from EPI acquisitions with differing phase-encoding directions
6 versions - Latest release: over 2 years ago - 1 dependent repositories - 55 downloads last month - 1 stars on GitHub - 1 maintainer
niseq 0.0.2
Group sequential tests for neuroimaging
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 23 downloads last month - 8 stars on GitHub - 1 maintainer
nondefaced-detector 0.1.3
A package to detect if an MRI Volume has been defaced.
4 versions - Latest release: about 3 years ago - 1 dependent repositories - 15 downloads last month - 6 stars on GitHub - 1 maintainer
pathmatcher 1.8.1
Regular Expression Path Matcher - Easily batch manipulate folders and files trees with regular ex...
6 versions - Latest release: about 1 year ago - 1 dependent repositories - 45 downloads last month - 4 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
phantominator 0.7.0
Generate numerical phantoms.
28 versions - Latest release: about 1 year ago - 5 dependent packages - 10 dependent repositories - 4.63 thousand downloads last month - 29 stars on GitHub - 1 maintainer
populse-mia 2.5.2
populse_mia
18 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 149 downloads last month - 10 stars on GitHub - 3 maintainers
pycoilgen 0.2.1
Magnetic Field Coil Generator for Python.
13 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 131 downloads last month - 10 stars on GitHub - 1 maintainer
pycoilgen_data 0.0.4
Extra data for pyCoilGen, the Open source Magnetic Resonance Coil Generator.
5 versions - Latest release: 8 months ago - 74 downloads last month - 10 stars on GitHub - 1 maintainer
pycoilgen_utils 0.0.2
Extra utilities for pyCoilGen, the Open Source Magnetic Resonance Coil Generator.
2 versions - Latest release: 8 months ago - 28 downloads last month - 10 stars on GitHub - 1 maintainer
pydcm2niix 1.0.20220116
DCM2NIIX Python package
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 811 stars on GitHub - 1 maintainer
pydiq 0.2.2
Simple open-source DICOM browser/viewer in Python and Qt4.
10 versions - Latest release: over 4 years ago - 4 dependent repositories - 8 downloads last month - 29 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
pydra-dcm2niix 1.2.1
Provides a task interface for the popular dcm2niix DICOM to NIfTI converter
6 versions - Latest release: 11 months ago - 3 dependent packages - 2 dependent repositories - 524 downloads last month - 811 stars on GitHub - 2 maintainers
pygrappa 0.26.2
GeneRalized Autocalibrating Partially Parallel Acquisitions.
57 versions - Latest release: 3 months ago - 1 dependent repositories - 658 downloads last month - 1 maintainer
Related Keywords
neuroimaging 37 dicom 27 python 21 neuroscience 18 nifti 16 MRI 12 machine-learning 12 deep-learning 12 imaging 12 DICOM 10 segmentation 10 medical-imaging 10 plugins 10 numpy 10 brain 10 bids 8 dcm 8 nii 7 magnetic-resonance-imaging 7 mri-images 7 diffusion 7 research 7 registration 7 fmri 7 nifti-format 6 bids-format 6 dcm2niix 6 image-processing 6 medical 6 gz 6 dicom-images 6 nitrc 5 jpeg-image 5 quality-control 5 pet 5 mricrogl 5 jpeg 5 microstructure 5 pytorch 5 medical-image-analysis 4 ct 4 medical-physics 4 medical-image-processing 4 simulation 4 reconstruction 4 nipype 4 model 4 cnn 4 dmri 4 preprocessing 4 super-resolution 4 tensorflow 4 mri-reconstruction 4 nufft 3 phantom 3 processing 3 python3 3 magnetic-field-solver 3 statistics 3 image 3 fsl 3 deformation 3 machine learning 3 inverse-problems 3 NMR 3 mrs 3 pipeline 3 computer-vision 3 image-registration 3 conversion 3 ants 3 spherical-harmonics 3 physics 3 nmr 3 surface 3 voxel 3 brainweb 3 tractography 3 brain-extraction 2 surface-reconstruction 2 keras 2 learning 2 dti 2 dsc 2 dce 2 deep learning 2 Physics 2 Coil 2 magnetization-transfer 2 convolutional-neural-networks 2 fastmri 2 Gradient Field 2 Target Field 2 siemens 2 Nuclear Resonance Imaging 2 Magnetic Resonance Imaging 2 grey matter 2 hippocampus 2 normalization 2 cv 2