pypi.org "bids" keyword
View the packages on the pypi.org package registry that are tagged with the "bids" keyword.
physutils 0.3.0
Set of utilities meant to be used with Physiopy libraries4 versions - Latest release: about 1 year ago - 26 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
40 versions - Latest release: 7 months ago - 2 dependent repositories - 381 downloads last month - 146 stars on GitHub - 1 maintainer
bidscoin 4.6.2
Converts and organises raw MRI data-sets according to the Brain Imaging Data Structure (BIDS)40 versions - Latest release: 7 months ago - 2 dependent repositories - 381 downloads last month - 146 stars on GitHub - 1 maintainer
convert-source 0.1.1
Converts and organises source MR image data-sets in accordance with the Brain Imaging Data Struct...15 versions - Latest release: almost 5 years ago - 1 dependent repositories - 72 downloads last month - 1 stars on GitHub - 1 maintainer
bids2table 2.1.2
Index BIDS datasets fast, locally or in the cloud.9 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 751 downloads last month - 18 stars on GitHub - 1 maintainer
brkraw 0.3.11
Bruker PvDataset Loader4 versions - Latest release: over 2 years ago - 1 dependent repositories - 289 downloads last month - 47 stars on GitHub - 1 maintainer
sim2bids 2.0.1
App to preprocess and convert simulation data40 versions - Latest release: about 3 years ago - 61 downloads last month - 3 stars on GitHub - 1 maintainer
d2b-sidecarless-nii 1.0.0
Plugin for the d2b package to handle NIfTI images without sidecars1 version - Latest release: about 4 years ago - 1 dependent repositories - 10 downloads last month - 0 stars on GitHub - 1 maintainer
qsiprep-container 0.19.1
qsiprep is a non-DTI diffusion-weighted image pre-processing pipeline that is designed to provide...48 versions - Latest release: over 2 years ago - 1 dependent repositories - 143 downloads last month - 166 stars on GitHub - 1 maintainer
physiopy 0.0.1b0
Metapackage for physiopy packages1 version - Latest release: almost 6 years ago - 1 dependent repositories - 16 downloads last month - 66 stars on GitHub - 1 maintainer
dmriprep 0.5.0
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data.8 versions - Latest release: almost 5 years ago - 1 dependent repositories - 46 downloads last month - 71 stars on GitHub - 1 maintainer
autoclean-eeg 2.0.4
A modular framework for automated EEG data processing, built on MNE-Python5 versions - Latest release: 7 months ago - 32 downloads last month - 3 stars on GitHub - 3 maintainers
pynipt 0.2.3
Python NeuroImaging Pipeline Tools9 versions - Latest release: over 5 years ago - 1 dependent repositories - 34 downloads last month - 1 stars on GitHub - 1 maintainer
nibetaseries 0.6.0
BetaSeries Correlations implemented in Nipype20 versions - Latest release: over 5 years ago - 1 dependent repositories - 118 downloads last month - 35 stars on GitHub - 1 maintainer
Top 2.3% on pypi.org
57 versions - Latest release: 3 months ago - 46 dependent packages - 163 dependent repositories - 186 thousand downloads last month - 249 stars on GitHub - 3 maintainers
pybids 0.21.0
bids: interface with datasets conforming to BIDS57 versions - Latest release: 3 months ago - 46 dependent packages - 163 dependent repositories - 186 thousand downloads last month - 249 stars on GitHub - 3 maintainers
pydra-bids 0.0.10
Pydra tasks for BIDS I/O10 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 1.14 thousand downloads last month - 2 stars on GitHub - 2 maintainers
biql 0.3.0
BIDS Query Language - A powerful SQL-like query language for BIDS neuroimaging datasets3 versions - Latest release: 6 months ago - 27 downloads last month - 0 stars on GitHub - 1 maintainer
d2b-nth-of-type 1.0.1
Plugin for the d2b package to deterministically uniquify different acquisition runs3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 25 downloads last month - 0 stars on GitHub - 1 maintainer
d2b-yaml 1.0.0
Plugin for the d2b package to YAML configuration files1 version - Latest release: about 4 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
bidscramble 1.0.0
Generates scrambled datasets that are organized according to the Brain Imaging Data Structure (BIDS)1 version - Latest release: 8 months ago - 17 downloads last month - 0 stars on GitHub - 1 maintainer
pydra-dcm2bids 0.0.4
Pydra tasks for dcm2bids4 versions - Latest release: almost 3 years ago - 18 downloads last month - 1 stars on GitHub - 1 maintainer
d2b-asl 2.0.1
Plugin for the d2b package to handle ASL data4 versions - Latest release: over 1 year ago - 1 dependent repositories - 28 downloads last month - 0 stars on GitHub - 1 maintainer
qsiprep 1.0.2
qsiprep builds workflows for preprocessing and reconstructing q-space images56 versions - Latest release: about 2 months ago - 1 dependent repositories - 306 downloads last month - 163 stars on GitHub - 1 maintainer
teneto 0.5.3
Temporal network tools24 versions - Latest release: almost 5 years ago - 1 dependent package - 5 dependent repositories - 277 downloads last month - 85 stars on GitHub - 1 maintainer
d2b-dcm2niix 1.0.0
Dcm2niix plugin for the d2b package1 version - Latest release: over 4 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
85 versions - Latest release: over 1 year ago - 7 dependent packages - 87 dependent repositories - 281 thousand downloads last month - 23 stars on GitHub - 3 maintainers
bids-validator 1.14.6
Validator for the Brain Imaging Data Structure85 versions - Latest release: over 1 year ago - 7 dependent packages - 87 dependent repositories - 281 thousand downloads last month - 23 stars on GitHub - 3 maintainers
clabtoolkit 0.4.0
A comprehensive toolkit for neuroimaging data processing and analysis11 versions - Latest release: 9 days ago - 76 downloads last month - 0 stars on GitHub - 1 maintainer
pymialsrtk 2.1.0
PyMIALSRTK: Nipype pipelines for the MIAL Super Resolution Toolkit4 versions - Latest release: almost 3 years ago - 1 dependent repositories - 17 downloads last month - 29 stars on GitHub - 1 maintainer
d2b 1.4.2
Organize data in the BIDS format21 versions - Latest release: over 3 years ago - 6 dependent repositories - 131 downloads last month - 0 stars on GitHub - 1 maintainer
bids-events 0.0.5
A package to export events to be used in BIDS datasets.4 versions - Latest release: over 7 years ago - 1 dependent repositories - 54 downloads last month - 0 stars on GitHub - 1 maintainer
d2b-compile 1.1.0
compile-dcm2bids-config plugin for the d2b package2 versions - Latest release: about 4 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
4 versions - Latest release: 7 months ago - 8 dependent packages - 3 dependent repositories - 6.29 thousand downloads last month - 1,039 stars on GitHub - 1 maintainer
dcm2niix 1.0.20250506
DCM2NIIX Python package4 versions - Latest release: 7 months ago - 8 dependent packages - 3 dependent repositories - 6.29 thousand downloads last month - 1,039 stars on GitHub - 1 maintainer
boavus 0.4
Tools to analyze data structured as BIDS in Python2 versions - Latest release: about 7 years ago - 1 dependent repositories - 68 downloads last month - 0 stars on GitHub - 1 maintainer
nifti-finder 1.1.0
Flexible file explorers and filters for navigating neuroimaging datasets and beyond.3 versions - Latest release: 4 months ago - 370 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.8% on pypi.org
25 versions - Latest release: over 1 year ago - 7 dependent repositories - 1.43 thousand downloads last month - 183 stars on GitHub - 2 maintainers
dcm2bids 3.2.0
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure25 versions - Latest release: over 1 year ago - 7 dependent repositories - 1.43 thousand downloads last month - 183 stars on GitHub - 2 maintainers
Top 4.6% on pypi.org
199 versions - Latest release: 3 months ago - 11 dependent repositories - 3.52 thousand downloads last month - 621 stars on GitHub - 5 maintainers
fmriprep 25.2.3
A robust and easy-to-use pipeline for preprocessing of diverse fMRI data199 versions - Latest release: 3 months ago - 11 dependent repositories - 3.52 thousand downloads last month - 621 stars on GitHub - 5 maintainers
pypet2bids 1.4.4 💰
A python library for converting PET imaging and blood data to BIDS.48 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 242 downloads last month - 30 stars on GitHub - 2 maintainers
multiecho 0.31
Combine multi-echoes from a multi-echo fMRI acquisition.10 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 447 downloads last month - 7 stars on GitHub - 1 maintainer
bidsarray 0.1.1
Snakemake + BIDS2 versions - Latest release: over 1 year ago - 26 downloads last month - 18 stars on GitHub - 1 maintainer
Top 5.3% on pypi.org
184 versions - Latest release: 3 months ago - 1 dependent package - 9 dependent repositories - 1.76 thousand downloads last month - 621 stars on GitHub - 5 maintainers
fmriprep-docker 25.2.3
A wrapper for generating Docker commands using regular fMRIPrep syntax184 versions - Latest release: 3 months ago - 1 dependent package - 9 dependent repositories - 1.76 thousand downloads last month - 621 stars on GitHub - 5 maintainers
hedit 0.6.5a0
Multi-agent system for HED annotation generation and validation6 versions - Latest release: 15 days ago - 450 downloads last month - 1 stars on GitHub - 1 maintainer
Top 3.4% on pypi.org
20 versions - Latest release: 15 days ago - 11 dependent packages - 50 dependent repositories - 104 thousand downloads last month - 158 stars on GitHub - 3 maintainers
mne-bids 0.18.0 💰
MNE-BIDS: Organizing MEG, EEG, and iEEG data according to the BIDS specification and facilitating...20 versions - Latest release: 15 days ago - 11 dependent packages - 50 dependent repositories - 104 thousand downloads last month - 158 stars on GitHub - 3 maintainers
bids_explorer 0.1.0
A simple bids dataset explorer without being too strict1 version - Latest release: 7 months ago - 138 downloads last month - 2 stars on GitHub - 1 maintainer
autocleaneeg-pipeline 2.3.0
A modular framework for automated EEG data processing, built on MNE-Python12 versions - Latest release: 4 months ago - 52 downloads last month - 2 stars on GitHub - 1 maintainer
Top 6.7% on pypi.org
38 versions - Latest release: 19 days ago - 3 dependent packages - 1 dependent repositories - 432 thousand downloads last month - 329 stars on GitHub - 4 maintainers
bidsschematools 1.1.4
Python tools for working with the BIDS schema.38 versions - Latest release: 19 days ago - 3 dependent packages - 1 dependent repositories - 432 thousand downloads last month - 329 stars on GitHub - 4 maintainers
bidsmreye 0.5.0
bids app using deepMReye to decode eye motion for fMRI time series data6 versions - Latest release: over 1 year ago - 52 downloads last month - 7 stars on GitHub - 1 maintainer
bidsapp-helper 0.1.0
Python helper package to simplify creation of BIDS apps1 version - Latest release: over 1 year ago - 23 downloads last month - 0 stars on GitHub - 1 maintainer
bruker 0.3.7
Bruker PvDataset Loader34 versions - Latest release: over 4 years ago - 1 dependent repositories - 268 downloads last month - 47 stars on GitHub - 1 maintainer
connectomemapper 3.2.0
Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human...6 versions - Latest release: over 1 year ago - 1 dependent repositories - 622 downloads last month - 75 stars on GitHub - 1 maintainer
pybids-reports 0.1.0
pybids-reports: report generator for BIDS datasets1 version - Latest release: over 1 year ago - 8 downloads last month - 1 stars on GitHub - 2 maintainers
remodnav 1.1.2
robust eye movement detection for natural viewing8 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 5.94 thousand downloads last month - 69 stars on GitHub - 2 maintainers
mne-hfo 0.2
MNE-HFO: Facilitates estimation/detection of high-frequency oscillationevents on iEEG data with M...2 versions - Latest release: over 4 years ago - 1 dependent repositories - 145 downloads last month - 14 stars on GitHub - 2 maintainers
compile-dcm2bids-config 1.4.3 💰
Compile Dcm2Bids configuration files into a single config file.10 versions - Latest release: about 4 years ago - 1 dependent repositories - 75 downloads last month - 0 stars on GitHub - 1 maintainer
Top 10.0% on pypi.org
43 versions - Latest release: about 2 months ago - 4 dependent packages - 14 dependent repositories - 614 downloads last month - 21 stars on GitHub - 1 maintainer
snakebids 0.15.0
BIDS integration into snakemake workflows43 versions - Latest release: about 2 months ago - 4 dependent packages - 14 dependent repositories - 614 downloads last month - 21 stars on GitHub - 1 maintainer
rshrf 1.5.8
BIDs App to retrieve the haemodynamic response function from resting state fMRI data20 versions - Latest release: over 4 years ago - 1 dependent repositories - 112 downloads last month - 37 stars on GitHub - 2 maintainers
bids-validator-deno 2.2.5
Typescript implementation of the BIDS validator16 versions - Latest release: 28 days ago - 54.9 thousand downloads last month - 23 stars on GitHub - 2 maintainers
clinicadl 1.6.1
Framework for the reproducible processing of neuroimaging data with deep learning methods35 versions - Latest release: almost 2 years ago - 1 dependent repositories - 192 downloads last month - 152 stars on GitHub - 4 maintainers
sanajeh 0.8
Simulate fMRI and iEEG data in BIDS format8 versions - Latest release: about 7 years ago - 1 dependent repositories - 36 downloads last month - 0 stars on GitHub - 1 maintainer
mne-bids-pipeline 1.9.0 💰
A full-flegded processing pipeline for your MEG and EEG data14 versions - Latest release: over 1 year ago - 1 dependent repositories - 331 downloads last month - 157 stars on GitHub - 1 maintainer
clinicaio 0.2.0
A Python library for input/output management of all Clinica projects.2 versions - Latest release: about 1 year ago - 22 downloads last month - 1 stars on GitHub - 1 maintainer
bidso 0.8
Transparent Object-Oriented Approach to BIDS in Python8 versions - Latest release: about 7 years ago - 2 dependent repositories - 87 downloads last month - 0 stars on GitHub - 1 maintainer
batch22 0.1.2021.1.25.2
batch22 (b22)25 versions - Latest release: almost 5 years ago - 203 downloads last month - 1 maintainer
phys2bids 2.10.0
Python library to convert physiological data files into BIDS format27 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 94 downloads last month - 66 stars on GitHub - 1 maintainer
comp-validator 0.1.0
BIDS-validator for computational data (simulations).2 versions - Latest release: about 3 years ago - 12 downloads last month - 0 stars on GitHub - 1 maintainer
pydcm2niix 1.0.20220116
DCM2NIIX Python package2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 36 downloads last month - 1,045 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
48 versions - Latest release: 5 months ago - 1 dependent package - 1 dependent repositories - 252 downloads last month - 218 stars on GitHub - 4 maintainers
clinica 0.10.1
Software platform for clinical neuroimaging studies48 versions - Latest release: 5 months ago - 1 dependent package - 1 dependent repositories - 252 downloads last month - 218 stars on GitHub - 4 maintainers
psychopy-bids 2025.1.2
A PsychoPy plugin for using the Brain Imaging Data Structure (BIDS) to organize and describe data.19 versions - Latest release: 10 months ago - 306 downloads last month - 3 stars on gitlab.com - 3 maintainers
snirf2bids 0.8.7
To convert snirf file to bids format.39 versions - Latest release: 12 months ago - 1 dependent repositories - 105 downloads last month - 4 stars on GitHub - 2 maintainers
Related Keywords
neuroimaging
33
neuroscience
22
python
13
mri
8
fmri
7
dicom
6
nifti
6
BIDS
5
eeg
5
data-standards
5
brain-imaging
4
dcm2niix
4
bids-apps
4
mne-python
4
closember
4
python3
4
plugin
4
bidsapp
4
d2b
4
cli
3
tool
3
image-processing
3
dcm2bids
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preprocessing
3
brainweb
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pipelines
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diffusion-mri
3
nii
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bids-format
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image processing
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converter
3
hacktoberfest
3
physiological-signals
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nibabel
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imaging
3
physiology
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nitrc
2
dcm
2
jpeg
2
research
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config
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freesurfer
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validation
2
neuroimaging-data
2
par
2
rec
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configuration
2
medical-imaging
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pydra
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mricrogl
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dicom-images
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gz
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jpeg-image
2
mri-images
2
nifti-format
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fmri-preprocessing
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snakemake
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brain imaging data structure
2
ieeg
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mne
2
eye-tracking
2
brain
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psychology
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machine learning
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denoising-images
2
pet
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psychopy
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parrec
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data-sharing
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distortion-correction
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computational data
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motion-correction
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conversion
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electrophysiology
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bruker
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simulations
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acqknowledge
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data_handler
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spike2
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python3-library
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signal-processing
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physiological-recordings
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dataloader
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docker
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singularity
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dmri
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