Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "bids" keyword
phys2bids 2.10.0
Python library to convert physiological data files into BIDS format27 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 177 downloads last month - 56 stars on GitHub - 2 maintainers
pypet2bids 1.3.9 💰
A python library for converting PET imaging and blood data to BIDS.39 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 288 downloads last month - 19 stars on GitHub - 2 maintainers
Top 10.0% on pypi.org
40 versions - Latest release: 10 days ago - 2 dependent packages - 14 dependent repositories - 2.38 thousand downloads last month - 15 stars on GitHub - 2 maintainers
snakebids 0.13.0
BIDS integration into snakemake workflows40 versions - Latest release: 10 days ago - 2 dependent packages - 14 dependent repositories - 2.38 thousand downloads last month - 15 stars on GitHub - 2 maintainers
multiecho 0.29
Combine multi-echoes from a multi-echo fMRI acquisition.8 versions - Latest release: 9 months ago - 1 dependent package - 1 dependent repositories - 559 downloads last month - 6 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
82 versions - Latest release: about 1 month ago - 4 dependent packages - 87 dependent repositories - 33.9 thousand downloads last month - 176 stars on GitHub - 4 maintainers
bids-validator 1.14.5
Validator for the Brain Imaging Data Structure82 versions - Latest release: about 1 month ago - 4 dependent packages - 87 dependent repositories - 33.9 thousand downloads last month - 176 stars on GitHub - 4 maintainers
Top 4.6% on pypi.org
181 versions - Latest release: 4 days ago - 11 dependent repositories - 4.3 thousand downloads last month - 607 stars on GitHub - 5 maintainers
fmriprep 23.2.2
A robust and easy-to-use pipeline for preprocessing of diverse fMRI data181 versions - Latest release: 4 days ago - 11 dependent repositories - 4.3 thousand downloads last month - 607 stars on GitHub - 5 maintainers
Top 5.3% on pypi.org
167 versions - Latest release: 4 days ago - 1 dependent package - 9 dependent repositories - 1.7 thousand downloads last month - 607 stars on GitHub - 5 maintainers
fmriprep-docker 23.2.2
A wrapper for generating Docker commands using regular fMRIPrep syntax167 versions - Latest release: 4 days ago - 1 dependent package - 9 dependent repositories - 1.7 thousand downloads last month - 607 stars on GitHub - 5 maintainers
Top 9.3% on pypi.org
38 versions - Latest release: 15 days ago - 1 dependent package - 1 dependent repositories - 515 downloads last month - 213 stars on GitHub - 4 maintainers
clinica 0.8.1
Software platform for clinical neuroimaging studies38 versions - Latest release: 15 days ago - 1 dependent package - 1 dependent repositories - 515 downloads last month - 213 stars on GitHub - 4 maintainers
clinicadl 1.6.1
Framework for the reproducible processing of neuroimaging data with deep learning methods33 versions - Latest release: about 1 month ago - 1 dependent repositories - 368 downloads last month - 152 stars on GitHub - 4 maintainers
mne-bids-pipeline 1.8.0
A full-flegded processing pipeline for your MEG and EEG data13 versions - Latest release: about 2 months ago - 1 dependent repositories - 164 downloads last month - 128 stars on GitHub - 4 maintainers
Top 3.4% on pypi.org
16 versions - Latest release: over 1 year ago - 9 dependent packages - 50 dependent repositories - 17 thousand downloads last month - 120 stars on GitHub - 3 maintainers
mne-bids 0.11.1
MNE-BIDS: Organizing MEG, EEG, and iEEG data according to the BIDS specification and facilitating...16 versions - Latest release: over 1 year ago - 9 dependent packages - 50 dependent repositories - 17 thousand downloads last month - 120 stars on GitHub - 3 maintainers
Top 8.7% on pypi.org
34 versions - Latest release: about 1 month ago - 2 dependent repositories - 484 downloads last month - 117 stars on GitHub - 1 maintainer
bidscoin 4.3.2
Converts and organises raw MRI data-sets according to the Brain Imaging Data Structure (BIDS)34 versions - Latest release: about 1 month ago - 2 dependent repositories - 484 downloads last month - 117 stars on GitHub - 1 maintainer
pynipt 0.2.3
Python NeuroImaging Pipeline Tools9 versions - Latest release: almost 4 years ago - 1 dependent repositories - 25 downloads last month - 1 stars on GitHub - 2 maintainers
d2b-asl 2.0.0
Plugin for the d2b package to handle ASL data3 versions - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 2 maintainers
pydra-bids 0.0.10
Pydra tasks for BIDS I/O10 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 260 downloads last month - 2 stars on GitHub - 3 maintainers
sim2bids 2.0.1
App to preprocess and convert simulation data40 versions - Latest release: over 1 year ago - 50 downloads last month - 3 stars on GitHub - 1 maintainer
pydra-dcm2bids 0.0.4
Pydra tasks for dcm2bids4 versions - Latest release: about 1 year ago - 42 downloads last month - 1 stars on GitHub - 1 maintainer
bids2table 0.1.0
Efficiently index large-scale BIDS datasets and derivatives3 versions - Latest release: 9 days ago - 1 dependent repositories - 410 downloads last month - 11 stars on GitHub - 2 maintainers
pybids-reports 0.1.0
pybids-reports: report generator for BIDS datasets1 version - Latest release: 29 days ago - 145 downloads last month - 1 stars on GitHub - 2 maintainers
batch22 0.1.2021.1.25.2
batch22 (b22)25 versions - Latest release: over 3 years ago - 157 downloads last month - 1 maintainer
pvandyken-deprecated 0.0.4
Wrapper to manage deprecations4 versions - Latest release: 8 months ago - 1 dependent package - 1 dependent repositories - 3.09 thousand downloads last month - 15 stars on GitHub - 2 maintainers
compile-dcm2bids-config 1.4.3 💰
Compile Dcm2Bids configuration files into a single config file.10 versions - Latest release: over 2 years ago - 1 dependent repositories - 9 downloads last month - 0 stars on GitHub - 2 maintainers
d2b 1.4.2
Organize data in the BIDS format21 versions - Latest release: over 1 year ago - 6 dependent repositories - 215 downloads last month - 0 stars on GitHub - 2 maintainers
bidso 0.8
Transparent Object-Oriented Approach to BIDS in Python8 versions - Latest release: over 5 years ago - 2 dependent repositories - 32 downloads last month - 0 stars on GitHub - 2 maintainers
bidsmreye 0.3.1
bids app using deepMReye to decode eye motion for fMRI time series data4 versions - Latest release: over 1 year ago - 37 downloads last month - 5 stars on GitHub - 1 maintainer
teneto 0.5.3
Temporal network tools24 versions - Latest release: about 3 years ago - 1 dependent package - 5 dependent repositories - 188 downloads last month - 84 stars on GitHub - 2 maintainers
physiopy 0.0.1b0
Metapackage for physiopy packages1 version - Latest release: over 4 years ago - 1 dependent repositories - 18 downloads last month - 56 stars on GitHub - 1 maintainer
snirf2bids 0.7.8
To convert snirf file to bids format.36 versions - Latest release: 7 months ago - 1 dependent repositories - 140 downloads last month - 2 stars on GitHub - 3 maintainers
Top 2.3% on pypi.org
48 versions - Latest release: 5 months ago - 40 dependent packages - 163 dependent repositories - 29.4 thousand downloads last month - 211 stars on GitHub - 3 maintainers
pybids 0.16.4
bids: interface with datasets conforming to BIDS48 versions - Latest release: 5 months ago - 40 dependent packages - 163 dependent repositories - 29.4 thousand downloads last month - 211 stars on GitHub - 3 maintainers
remodnav 1.1.2
robust eye movement detection for natural viewing8 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 112 downloads last month - 50 stars on GitHub - 4 maintainers
psychopy_bids 2023.2.0
A PsychoPy plugin for using the Brain Imaging Data Structure (BIDS) to organize and describe data.8 versions - Latest release: 5 months ago - 77 downloads last month - 2 stars on GitLab.com - 1 maintainer
connectomemapper 3.1.0
Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human...5 versions - Latest release: over 1 year ago - 1 dependent repositories - 56 downloads last month - 61 stars on GitHub - 2 maintainers
mne-hfo 0.2
MNE-HFO: Facilitates estimation/detection of high-frequency oscillationevents on iEEG data with M...2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 18 downloads last month - 12 stars on GitHub - 2 maintainers
sanajeh 0.8
Simulate fMRI and iEEG data in BIDS format8 versions - Latest release: over 5 years ago - 1 dependent repositories - 21 downloads last month - 0 stars on GitHub - 2 maintainers
brkraw 0.3.11
Bruker PvDataset Loader2 versions - Latest release: 10 months ago - 1 dependent repositories - 55 downloads last month - 35 stars on GitHub - 2 maintainers
Top 4.4% on pypi.org
2 versions - Latest release: almost 2 years ago - 8 dependent packages - 3 dependent repositories - 4.48 thousand downloads last month - 805 stars on GitHub - 2 maintainers
dcm2niix 1.0.20220715
DCM2NIIX Python package2 versions - Latest release: almost 2 years ago - 8 dependent packages - 3 dependent repositories - 4.48 thousand downloads last month - 805 stars on GitHub - 2 maintainers
pydcm2niix 1.0.20220116
DCM2NIIX Python package2 versions - Latest release: over 2 years ago - 1 dependent repositories - 16 downloads last month - 805 stars on GitHub - 1 maintainer
boavus 0.4
Tools to analyze data structured as BIDS in Python2 versions - Latest release: over 5 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 2 maintainers
bruker 0.3.7
Bruker PvDataset Loader34 versions - Latest release: almost 3 years ago - 1 dependent repositories - 291 downloads last month - 35 stars on GitHub - 2 maintainers
comp-validator 0.1.0
BIDS-validator for computational data (simulations).2 versions - Latest release: over 1 year ago - 9 downloads last month - 0 stars on GitHub - 1 maintainer
rshrf 1.5.8
BIDs App to retrieve the haemodynamic response function from resting state fMRI data20 versions - Latest release: over 2 years ago - 1 dependent repositories - 24 downloads last month - 28 stars on GitHub - 4 maintainers
nibetaseries 0.6.0
BetaSeries Correlations implemented in Nipype20 versions - Latest release: about 4 years ago - 1 dependent repositories - 80 downloads last month - 29 stars on GitHub - 2 maintainers
dmriprep 0.5.0
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data.8 versions - Latest release: about 3 years ago - 1 dependent repositories - 22 downloads last month - 62 stars on GitHub - 2 maintainers
Top 6.8% on pypi.org
24 versions - Latest release: 7 months ago - 7 dependent repositories - 1 thousand downloads last month - 147 stars on GitHub - 4 maintainers
dcm2bids 3.1.1
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure24 versions - Latest release: 7 months ago - 7 dependent repositories - 1 thousand downloads last month - 147 stars on GitHub - 4 maintainers
pymialsrtk 2.1.0
PyMIALSRTK: Nipype pipelines for the MIAL Super Resolution Toolkit4 versions - Latest release: over 1 year ago - 1 dependent repositories - 27 downloads last month - 24 stars on GitHub - 2 maintainers
Top 6.7% on pypi.org
9 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 26 thousand downloads last month - 252 stars on GitHub - 4 maintainers
bidsschematools 0.8.0
Python tools for working with the BIDS schema.9 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 26 thousand downloads last month - 252 stars on GitHub - 4 maintainers
d2b-dcm2niix 1.0.0
Dcm2niix plugin for the d2b package1 version - Latest release: over 2 years ago - 1 dependent repositories - 6 downloads last month - 0 stars on GitHub - 2 maintainers
d2b-compile 1.1.0
compile-dcm2bids-config plugin for the d2b package2 versions - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 2 maintainers
d2b-nth-of-type 1.0.1
Plugin for the d2b package to deterministically uniquify different acquisition runs3 versions - Latest release: about 2 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 2 maintainers
d2b-sidecarless-nii 1.0.0
Plugin for the d2b package to handle NIfTI images without sidecars1 version - Latest release: over 2 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 2 maintainers
d2b-yaml 1.0.0
Plugin for the d2b package to YAML configuration files1 version - Latest release: over 2 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 2 maintainers
convert-source 0.1.1
Converts and organises source MR image data-sets in accordance with the Brain Imaging Data Struct...15 versions - Latest release: about 3 years ago - 1 dependent repositories - 15 downloads last month - 1 stars on GitHub - 2 maintainers
bids-events 0.0.5
A package to export events to be used in BIDS datasets.4 versions - Latest release: over 5 years ago - 1 dependent repositories - 28 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
neuroimaging
27
neuroscience
16
python
13
mri
8
fmri
7
dicom
6
nifti
5
brain-imaging
5
bidsapp
4
bids-apps
4
python3
4
plugin
4
d2b
4
BIDS
4
dcm2niix
4
bids-format
3
tool
3
dcm2bids
3
nibabel
3
data-standards
3
nii
3
converter
3
closember
3
brainweb
3
parrec
2
pet
2
pydra
2
data-sharing
2
simulations
2
rec
2
par
2
computational data
2
conversion
2
nifti-format
2
mri-images
2
jpeg-image
2
gz
2
dicom-images
2
mricrogl
2
nitrc
2
dcm
2
jpeg
2
research
2
simpleitk
2
dataloader
2
administrator_tool
2
data_handler
2
bruker
2
eye-tracking
2
cli
2
configuration
2
config
2
brain
2
hacktoberfest
2
acqknowledge
2
labchart
2
physiological-recordings
2
physiological-signals
2
mne-python
2
physiology
2
python3-library
2
snakemake
2
multi-echo
2
eeg
2
ieeg
2
fmri-preprocessing
2
image-processing
2
brain imaging data structure
2
image processing
2
mne
2
imaging
2
singularity
1
pipelines
1
parcellation
1
hfo-detection
1
ieeg-data
1
docker
1
dmri
1
connectome
1
chuv
1
dataset
1
data
1
api
1
snirf
1
fnirs
1
time-varying-connectivity
1
temporal-networks
1
temporal-network-theory
1
networks
1
network-theory
1
dynamics
1
neuroinformatics
1
standards
1
workflow
1
super-resolution
1
nipype
1
itk
1
fetal
1
preprocessing
1
magnetic-resonance-imaging
1