Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "mri" keyword
cartimorph-vxm 0.9.1
Image Registration with Convolutional Networks tailored for the CartiMorph framework6 versions - Latest release: 10 months ago - 19 downloads last month - 0 stars on GitHub - 1 maintainer
pylarid 0.1.dev0
Load Arrays of Imaging Data1 version - Latest release: 6 months ago - 12 downloads last month - 0 stars on GitHub - 1 maintainer
d2b-asl 2.0.0
Plugin for the d2b package to handle ASL data3 versions - Latest release: over 2 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 1 maintainer
atommic 1.0.1
Advanced Toolbox for Multitask Medical Imaging Consistency (ATOMMIC)2 versions - Latest release: 21 days ago - 208 downloads last month - 0 stars on GitHub - 1 maintainer
d2b 1.4.2
Organize data in the BIDS format21 versions - Latest release: almost 2 years ago - 6 dependent repositories - 215 downloads last month - 0 stars on GitHub - 1 maintainer
hart-amsaf 0.0.4
The HART Lab Automated MRI Segmentation and Analysis Framework4 versions - Latest release: over 6 years ago - 1 dependent repositories - 39 downloads last month - 0 stars on GitHub - 1 maintainer
dmri-pcconv 1.0.0
Parametric Continuous Convolution framework used for Diffusion MRI.1 version - Latest release: 6 months ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
tse-motion 0.2.4
A package to rate motion artifacts in medical images.5 versions - Latest release: 8 days ago - 1.07 thousand downloads last month - 0 stars on GitHub - 1 maintainer
dicom2cloud 0.9
Platform independent GUI for anonymizing/uploading brain scans to an image processing cloud instance2 versions - Latest release: over 6 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 1 maintainer
t2stimulate 0.1.0
MRI T2 decay curve simulation with imperfect excitation pulse (B1)1 version - Latest release: almost 5 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
dicom-parser 1.2.3
DICOM files parser meant to facilitate data access.15 versions - Latest release: almost 2 years ago - 3 dependent packages - 1 dependent repositories - 947 downloads last month - 0 stars on GitHub - 1 maintainer
deepmri 0.0.1
A deep learning toolbox for parallel MRI reconstruction1 version - Latest release: about 3 years ago - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 1 maintainer
multipropreg 0.1.1
Image registration network using deformation field2 versions - Latest release: 7 months ago - 12 downloads last month - 0 stars on GitHub - 1 maintainer
mri-distortionqa 0.8.1 removed
Quality assurance tools for MRI geometric distortion9 versions - Latest release: almost 2 years ago - 0 stars on
spydcmtk 1.1.6
Simple python dicom toolkit.9 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 79 downloads last month - 0 stars on GitHub - 1 maintainer
imaging-research 0.1.1
Medical Imaginging Research structuring and automation17 versions - Latest release: 22 days ago - 193 downloads last month - 0 stars on GitHub - 1 maintainer
graymatter_swissknife 1.2.2
Gray Matter Swiss Knife : Generalized Exchange Model estimators for diffusion MRI18 versions - Latest release: about 1 month ago - 399 downloads last month - 1 stars on GitHub - 1 maintainer
dwiprep 0.1.5
DWIprep is a robust and easy-to-use preprocessing pipeline for diffusion-weighted imaging of vari...1 version - Latest release: almost 3 years ago - 2 dependent repositories - 26 downloads last month - 1 stars on GitHub - 1 maintainer
nipype-generate-fieldmaps 0.2.4 💰
Nipype workflow to generate fieldmaps from EPI acquisitions with differing phase-encoding directions6 versions - Latest release: over 2 years ago - 1 dependent repositories - 55 downloads last month - 1 stars on GitHub - 1 maintainer
mrdataset 0.4.4
MRdataset7 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 76 downloads last month - 1 stars on GitHub - 1 maintainer
convert-source 0.1.1
Converts and organises source MR image data-sets in accordance with the Brain Imaging Data Struct...15 versions - Latest release: about 3 years ago - 1 dependent repositories - 199 downloads last month - 1 stars on GitHub - 1 maintainer
nexi 1.0.7
Neurite Exchange Imaging (NEXI) model estimator for diffusion MRI10 versions - Latest release: 9 months ago - 72 downloads last month - 2 stars on GitHub - 1 maintainer
radifox 1.1.0
RADIFOX is the RADiological Image File Ontology eXtension, a Python package for the organization ...12 versions - Latest release: 27 days ago - 230 downloads last month - 2 stars on GitHub - 1 maintainer
lesion-metrics 0.1.12
metrics for evaluating lesion segmentations13 versions - Latest release: over 2 years ago - 1 dependent repositories - 190 downloads last month - 2 stars on GitHub - 1 maintainer
mridatapy 0.0.6
A lightweight toolbox for downloading and processing mridata from mridata.org6 versions - Latest release: about 3 years ago - 1 dependent repositories - 47 downloads last month - 2 stars on GitHub - 1 maintainer
bids-derivatives 0.0.1
Python package for querying BIDS Apps` processed derivatives.2 versions - Latest release: almost 2 years ago - 25 downloads last month - 2 stars on GitHub - 1 maintainer
mri-distortion-toolkit 0.14.10
Quality assurance tools for MRI geometric distortion16 versions - Latest release: 3 months ago - 72 downloads last month - 2 stars on GitHub - 1 maintainer
ndicom-cuda-kmeans 0.0.1.dev1
Neurdicom plugins2 versions - Latest release: almost 6 years ago - 1 dependent repositories - 15 downloads last month - 3 stars on GitHub - 1 maintainer
mnisiscom 0.4.0
A simple command line tool and GUI for computing subtraction ictal SPECT coregistered to MRI (SIS...1 version - Latest release: over 4 years ago - 1 dependent repositories - 18 downloads last month - 3 stars on GitHub - 1 maintainer
brainles-aurora 0.2.4
Segmentation models for cancer metastasis in brain MR.19 versions - Latest release: about 1 month ago - 198 downloads last month - 3 stars on GitHub - 2 maintainers
ndicom-gaussian-mixture 0.0.1.dev1
Neurdicom plugins1 version - Latest release: almost 6 years ago - 1 dependent repositories - 18 downloads last month - 3 stars on GitHub - 1 maintainer
ktblast 0.1.0
Python implementation of the k-t BLAST algorithm.1 version - Latest release: over 4 years ago - 1 dependent repositories - 17 downloads last month - 3 stars on GitHub - 1 maintainer
mrsprint 1.2.2
Magnetic resonance experiment simulator and visualization tool.3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 34 downloads last month - 3 stars on GitLab.com - 1 maintainer
ndicom-kernel-kmeans 0.0.1.dev0
Neurdicom plugins1 version - Latest release: almost 6 years ago - 1 dependent repositories - 20 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-meanshift 0.0.1.dev1
Neurdicom plugins1 version - Latest release: almost 6 years ago - 1 dependent repositories - 16 downloads last month - 3 stars on GitHub - 1 maintainer
deepparcellation 1.0.35
DeepParcellation: fast and accurate brain MRI parcellation by deep learning36 versions - Latest release: over 2 years ago - 1 dependent repositories - 115 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-region-growing 0.0.1.dev0
Neurdicom plugins1 version - Latest release: almost 6 years ago - 1 dependent repositories - 14 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-improved-kmeans 0.0.1.dev0
Neurdicom plugins1 version - Latest release: almost 6 years ago - 1 dependent repositories - 13 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-gauss-kernel-kmeans 0.0.1.dev0
Neurdicom plugins1 version - Latest release: almost 6 years ago - 1 dependent repositories - 16 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-thresholding 0.0.1.dev1
Neurdicom plugins1 version - Latest release: almost 6 years ago - 1 dependent repositories - 14 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-fcm 0.0.1.dev2
Neurdicom plugins3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 27 downloads last month - 3 stars on GitHub - 1 maintainer
ndicom-kmeans 0.0.1.dev0
Neurdicom plugins1 version - Latest release: almost 6 years ago - 1 dependent repositories - 13 downloads last month - 3 stars on GitHub - 1 maintainer
pyrobex 0.4.3
python bindings for ROBEX brain extraction7 versions - Latest release: over 1 year ago - 1 dependent repositories - 51 downloads last month - 4 stars on GitHub - 1 maintainer
data-tracking 1.7.3
Extract meta-data from DICOM and NIFTI files20 versions - Latest release: almost 6 years ago - 2 dependent repositories - 153 downloads last month - 4 stars on GitHub - 2 maintainers
roiloc 0.3.0
A simple package to center and crop T1w & T2w MRIs around a given region of interest by its name.13 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 139 downloads last month - 4 stars on GitHub - 2 maintainers
pathmatcher 1.8.1
Regular Expression Path Matcher - Easily batch manipulate folders and files trees with regular ex...6 versions - Latest release: about 1 year ago - 1 dependent repositories - 45 downloads last month - 4 stars on GitHub - 1 maintainer
deepneuroseg 0.4
Deep-learning Tool for White Matter (WM) lesions and Claustrum structure segmentation in brain ma...4 versions - Latest release: almost 3 years ago - 1 dependent repositories - 16 downloads last month - 4 stars on GitHub - 1 maintainer
brainweb-dl 0.2.1
Download BrainWeb MRI data9 versions - Latest release: 3 months ago - 2 dependent packages - 246 downloads last month - 5 stars on GitHub - 1 maintainer
mrainet 0.1.0
MR acquisition-invariant network.1 version - Latest release: almost 6 years ago - 1 dependent repositories - 18 downloads last month - 5 stars on GitHub - 1 maintainer
pylaynii 0.0.0
Layer-MRI analysis in python.1 version - Latest release: over 4 years ago - 1 dependent repositories - 11 downloads last month - 5 stars on GitHub - 1 maintainer
tiramisu-brulee 0.2.2
A 2D and 3D PyTorch implementation of the Tiramisu CNN37 versions - Latest release: over 2 years ago - 1 dependent repositories - 344 downloads last month - 5 stars on GitHub - 1 maintainer
hsf 1.2.1
A simple yet exhaustive segmentation tool of the Hippocampal Subfields in T1w and T2w MRIs.11 versions - Latest release: about 2 months ago - 1 dependent repositories - 186 downloads last month - 5 stars on GitHub - 2 maintainers
nondefaced-detector 0.1.3
A package to detect if an MRI Volume has been defaced.4 versions - Latest release: about 3 years ago - 1 dependent repositories - 15 downloads last month - 6 stars on GitHub - 1 maintainer
unravel-python 1.5.2
Implementation of UNRAVEL51 versions - Latest release: 28 days ago - 1 dependent repositories - 163 downloads last month - 6 stars on GitHub - 1 maintainer
multiecho 0.29
Combine multi-echoes from a multi-echo fMRI acquisition.8 versions - Latest release: 9 months ago - 1 dependent package - 1 dependent repositories - 559 downloads last month - 6 stars on GitHub - 1 maintainer
time-python 0.0.17
Implementation of TIME16 versions - Latest release: over 1 year ago - 2 dependent repositories - 3.1 thousand downloads last month - 6 stars on GitHub - 1 maintainer
ssfp 1.2.0
SSFP simulation11 versions - Latest release: 7 months ago - 2 dependent packages - 3 dependent repositories - 4.88 thousand downloads last month - 6 stars on GitHub - 1 maintainer
django-dicom 0.0.4
A simple Django app to manage DICOM files.4 versions - Latest release: over 4 years ago - 1 dependent repositories - 64 downloads last month - 6 stars on GitHub - 1 maintainer
django-mri 0.0.4
A reusable Django app to manage MRI data.4 versions - Latest release: over 4 years ago - 1 dependent repositories - 48 downloads last month - 7 stars on GitHub - 1 maintainer
vespa-suite 1.1.0
Vespa is a suite of inter-connnected applications for magnetic resonance spectroscopy simulation ...10 versions - Latest release: about 1 year ago - 1 dependent repositories - 88 downloads last month - 7 stars on GitHub - 2 maintainers
niseq 0.0.2
Group sequential tests for neuroimaging3 versions - Latest release: over 1 year ago - 1 dependent repositories - 23 downloads last month - 8 stars on GitHub - 1 maintainer
dwilib 0.1.8.dev0
Research tools for MRI-based CAD of cancer10 versions - Latest release: over 5 years ago - 1 dependent repositories - 120 downloads last month - 8 stars on GitHub - 1 maintainer
brainload 0.3.5 💰
Load FreeSurfer brain imaging data with minimal cognitive load.8 versions - Latest release: over 4 years ago - 2 dependent repositories - 64 downloads last month - 9 stars on GitHub - 1 maintainer
fmri-physio-log 0.3.2 💰
Parse Siemens PMU files10 versions - Latest release: 4 months ago - 1 dependent repositories - 83 downloads last month - 9 stars on GitHub - 1 maintainer
mrqa 0.2.4
rQA suite of tools offering automatic evaluation of protocol compliance10 versions - Latest release: 12 months ago - 154 downloads last month - 9 stars on GitHub - 1 maintainer
pycoilgen 0.2.1
Magnetic Field Coil Generator for Python.13 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 131 downloads last month - 10 stars on GitHub - 1 maintainer
pycoilgen_data 0.0.4
Extra data for pyCoilGen, the Open source Magnetic Resonance Coil Generator.5 versions - Latest release: 8 months ago - 74 downloads last month - 10 stars on GitHub - 1 maintainer
pycoilgen_utils 0.0.2
Extra utilities for pyCoilGen, the Open Source Magnetic Resonance Coil Generator.2 versions - Latest release: 8 months ago - 28 downloads last month - 10 stars on GitHub - 1 maintainer
populse-mia 2.5.2
populse_mia18 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 149 downloads last month - 10 stars on GitHub - 3 maintainers
erwin 1.2.0
Toolbox to generate quantitative maps from MRI images7 versions - Latest release: 10 months ago - 1 dependent repositories - 54 downloads last month - 10 stars on GitHub - 1 maintainer
designer2 2.0.7
designerV235 versions - Latest release: about 2 months ago - 166 downloads last month - 11 stars on GitHub - 3 maintainers
qtim_tools 0.1.12
A library for medical imaging analysis, with an emphasis on MRI, machine learning, and neuroimagi...12 versions - Latest release: about 7 years ago - 31 downloads last month - 11 stars on GitHub - 1 maintainer
react-fmri 0.1.7
A Python package that implements REACT: Receptor-Enriched Analysis of Functional Connectivity by ...10 versions - Latest release: almost 2 years ago - 1 dependent repositories - 67 downloads last month - 11 stars on GitHub - 2 maintainers
mrsd 1.0.0
MR sequence diagram toolkit4 versions - Latest release: about 1 year ago - 1 dependent repositories - 42 downloads last month - 11 stars on GitHub - 1 maintainer
fsleyes-plugin-mrs 0.1.2
FSLeyes extension for viewing MRS(I) data formatted as NIfTI-MRS.7 versions - Latest release: 6 months ago - 1 dependent repositories - 60 downloads last month - 11 stars on GitHub - 1 maintainer
kamui 0.1.1 💰
A Python package for phase unwrapping2 versions - Latest release: 8 months ago - 33 downloads last month - 13 stars on GitHub - 1 maintainer
mct 0.3.2
The MRI Coil-reconstruct Toolbox17 versions - Latest release: about 4 years ago - 1 dependent repositories - 190 downloads last month - 14 stars on GitHub - 1 maintainer
slowest_particle_simulator_on_earth 0.0.6
A very slow particle simulator for exploding nifti files.1 version - Latest release: over 4 years ago - 7 downloads last month - 15 stars on GitHub - 1 maintainer
airflow-imaging-plugins 2.4.3
Airflow plugins to support Neuroimaging tasks.43 versions - Latest release: over 6 years ago - 1 dependent repositories - 219 downloads last month - 15 stars on GitHub - 2 maintainers
nigsp 0.19.0
A python library (and toolbox!) to run Graph Signal Processing on multimodal MRI data.32 versions - Latest release: 28 days ago - 1 dependent repositories - 409 downloads last month - 16 stars on GitHub - 1 maintainer
dmri-rcnn 0.4.1
Diffusion MRI Recurrent CNN for Angular Super-resolution.7 versions - Latest release: 6 months ago - 1 dependent repositories - 53 downloads last month - 18 stars on GitHub - 1 maintainer
macapype 0.3.5
Pipeline for anatomic processing for macaque57 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 148 downloads last month - 19 stars on GitHub - 1 maintainer
retinex_for_mri 0.2.9
Retinex algorithm for MRI data.4 versions - Latest release: over 7 years ago - 18 downloads last month - 22 stars on GitHub - 1 maintainer
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 192 downloads last month - 22 stars on GitHub - 1 maintainer
iphigen 1.0.0
Retinex & color balance algorithms for image enhancement.1 version - Latest release: over 5 years ago - 1 dependent repositories - 19 downloads last month - 22 stars on GitHub - 1 maintainer
pymialsrtk 2.1.0
PyMIALSRTK: Nipype pipelines for the MIAL Super Resolution Toolkit4 versions - Latest release: over 1 year ago - 1 dependent repositories - 56 downloads last month - 24 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
14 versions - Latest release: over 2 years ago - 1 dependent package - 2 dependent repositories - 551 downloads last month - 27 stars on GitHub - 1 maintainer
sycomore 1.3.2
MRI simulation toolkit14 versions - Latest release: over 2 years ago - 1 dependent package - 2 dependent repositories - 551 downloads last month - 27 stars on GitHub - 1 maintainer
brainweb 1.6.2 💰
BrainWeb-based multimodal models of 20 normal brains18 versions - Latest release: over 3 years ago - 1 dependent package - 3 dependent repositories - 245 downloads last month - 27 stars on GitHub - 1 maintainer
tfkbnufft 0.2.5
A robust, easy-to-deploy non-uniform Fast Fourier Transform in TensorFlow.15 versions - Latest release: about 1 year ago - 3 dependent repositories - 50 downloads last month - 29 stars on GitHub - 1 maintainer
pydiq 0.2.2
Simple open-source DICOM browser/viewer in Python and Qt4.10 versions - Latest release: over 4 years ago - 4 dependent repositories - 8 downloads last month - 29 stars on GitHub - 1 maintainer
tfce-mediation 1.5.3
TFCE_mediation37 versions - Latest release: over 5 years ago - 1 dependent repositories - 75 downloads last month - 29 stars on GitHub - 2 maintainers
Top 9.4% on pypi.org
28 versions - Latest release: about 1 year ago - 5 dependent packages - 10 dependent repositories - 4.63 thousand downloads last month - 29 stars on GitHub - 1 maintainer
phantominator 0.7.0
Generate numerical phantoms.28 versions - Latest release: about 1 year ago - 5 dependent packages - 10 dependent repositories - 4.63 thousand downloads last month - 29 stars on GitHub - 1 maintainer
tmi_viewer 0.4.3
tmi_viewer24 versions - Latest release: over 6 years ago - 84 downloads last month - 29 stars on GitHub - 1 maintainer
tensorflow-mri 0.22.0
A collection of TensorFlow add-ons for computational MRI.30 versions - Latest release: over 1 year ago - 1 dependent repositories - 502 downloads last month - 35 stars on GitHub - 1 maintainer
brainsprite 0.14.2 💰
Python API for the brainsprite MRI brain viewer3 versions - Latest release: about 4 years ago - 1 dependent repositories - 46 downloads last month - 37 stars on GitHub - 1 maintainer
mridc 0.2.0
Data Consistency for Magnetic Resonance Imaging4 versions - Latest release: over 1 year ago - 1 dependent repositories - 37 downloads last month - 37 stars on GitHub - 1 maintainer
hippunfold 0.5.11
Snakemake BIDS app for hippocampal unfolding & subfield segmentation3 versions - Latest release: almost 3 years ago - 1 dependent repositories - 22 downloads last month - 45 stars on GitHub - 1 maintainer
nii2dcm 0.1.5
nii2dcm: NIfTI to DICOM creation with Python4 versions - Latest release: 3 months ago - 1 dependent repositories - 404 downloads last month - 46 stars on GitHub - 1 maintainer
virtual-scanner 2.0.0
Virtual Scanner educational tool for MRI14 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 178 downloads last month - 51 stars on GitHub - 1 maintainer
Top 8.6% on pypi.org
9 versions - Latest release: about 2 years ago - 2 dependent packages - 4 dependent repositories - 214 downloads last month - 53 stars on GitHub - 1 maintainer
dosma 0.1.2
An AI-powered open-source medical image analysis toolbox9 versions - Latest release: about 2 years ago - 2 dependent packages - 4 dependent repositories - 214 downloads last month - 53 stars on GitHub - 1 maintainer
Related Keywords
neuroimaging
37
dicom
27
python
21
neuroscience
18
nifti
16
imaging
12
MRI
12
machine-learning
12
deep-learning
12
segmentation
10
brain
10
medical-imaging
10
plugins
10
numpy
10
DICOM
10
bids
8
dcm
8
research
7
fmri
7
diffusion
7
magnetic-resonance-imaging
7
nii
7
registration
7
mri-images
7
dcm2niix
6
medical
6
bids-format
6
image-processing
6
nifti-format
6
gz
6
dicom-images
6
jpeg
5
pet
5
pytorch
5
microstructure
5
quality-control
5
nitrc
5
mricrogl
5
jpeg-image
5
simulation
4
preprocessing
4
cnn
4
super-resolution
4
ct
4
model
4
dmri
4
mri-reconstruction
4
nipype
4
medical-physics
4
reconstruction
4
tensorflow
4
medical-image-processing
4
medical-image-analysis
4
conversion
3
physics
3
pipeline
3
ants
3
nufft
3
image-registration
3
nmr
3
magnetic-field-solver
3
phantom
3
NMR
3
brainweb
3
deformation
3
mrs
3
fsl
3
surface
3
statistics
3
voxel
3
image
3
tractography
3
inverse-problems
3
computer-vision
3
processing
3
spherical-harmonics
3
machine learning
3
python3
3
connectome
2
mesh
2
spm
2
dti
2
Coil
2
surface-area
2
compressed-sensing
2
nibabel
2
image-segmentation
2
structural-mri
2
surface-reconstruction
2
convolutional-neural-networks
2
longitudinal
2
cortical-surfaces
2
causal-models
2
anova
2
fastmri
2
magnetization-transfer
2
tfce
2
repeated-measures
2
deep learning
2
hippocampus
2