Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "nanopore-sequencing" keyword
nanocem 0.0.1
A simple tool designed to visualize the features that distinguish between two groups of ONT data ...50 versions - Latest release: 11 months ago - 302 downloads last month - 9 stars on GitHub - 1 maintainer
nanoprep-ffm 0.0.17
A fully-equipped, fast, and memory-efficient pre-processor for ONT transcriptomic data13 versions - Latest release: 11 months ago - 73 downloads last month - 0 stars on GitHub - 1 maintainer
nanorepeat 1.4.1
NanoRepeat: quantification of Short Tandem Repeats (STRs) from long-read sequencing data6 versions - Latest release: about 1 year ago - 24 downloads last month - 15 stars on GitHub - 1 maintainer
deepsignal-plant 0.1.6
A deep-learning method for detecting DNA methylation state from Oxford Nanopore sequencing reads ...7 versions - Latest release: almost 2 years ago - 1 dependent repositories - 31 downloads last month - 51 stars on GitHub - 1 maintainer
rmetl 1.0.4
realignment-based Mobile Element insertion detection Tool for Long read2 versions - Latest release: over 4 years ago - 1 dependent repositories - 13 downloads last month - 15 stars on GitHub - 1 maintainer
neet-nanopore 1.0.0 removed
Toolkit for the analysis of systematic error patterns in nanopore sequencing data5 versions - Latest release: about 1 month ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
nanome-jax 2.0.11
NANOME (Nanopore methylation) pipeline developed by Li Lab at The Jackson Laboratory37 versions - Latest release: over 1 year ago - 1 dependent repositories - 344 downloads last month - 27 stars on GitHub - 1 maintainer
current-events-magnifier 0.0.4.4 removed
A sample tool designed to visualize the features that distinguish between two groups of ONT data ...16 versions - Latest release: 11 months ago - 1.51 thousand downloads last month - 1 stars on GitHub - 1 maintainer
xpore 0.5.6
xpore is a python package for Nanopore data analysis of differential RNA modifications.11 versions - Latest release: over 3 years ago - 1 dependent repositories - 140 downloads last month - 127 stars on GitHub - 1 maintainer
wahoo 0.0.1
Wahoo placeholder1 version - Latest release: over 3 years ago - 1 dependent repositories - 19 downloads last month - 112 stars on GitHub - 1 maintainer
deepsignal 0.2.0
A deep-learning method for detecting DNA methylation state from Oxford Nanopore sequencing reads11 versions - Latest release: about 2 years ago - 1 dependent repositories - 40 downloads last month - 105 stars on GitHub - 1 maintainer
nanoprep-ccchu 0.0.0 removed
A fully-equipped, fast, and memory-efficient pre-processor for ONT transcriptomic data1 version - Latest release: over 1 year ago - 1 stars on GitHub
nanoprep-ccc-test2 0.0.0 removed
A fully-equipped, fast, and memory-efficient pre-processor for ONT transcriptomic data1 version - Latest release: over 1 year ago - 1 stars on GitHub
nanoprep-ccc-test3 0.0.3 removed
A fully-equipped, fast, and memory-efficient pre-processor for ONT transcriptomic data4 versions - Latest release: over 1 year ago - 1 stars on GitHub
nanoprep-ccc 0.0.3 removed
A fully-equipped, fast, and memory-efficient pre-processor for ONT transcriptomic data1 version - Latest release: over 1 year ago - 1 stars on GitHub
Related Keywords
pre-processing
5
bioinformatics
4
nanopore
3
machine-learning
2
neural network
2
methylation
2
genomics
2
rna-seq
1
rna-modifications
1
transcriptomics
1
epigenetics
1
rna
1
python
1
modification
1
tensorflow
1
pipeline
1
methylation-calling
1
long-read-sequencing
1
dna-methylation
1
visualization
1
explorative-analysis
1
error-pattern
1
variant-calling
1
transposons
1
realignment
1
pacbio-data
1
mei-detection
1
mei
1
pytorch
1
plant
1
short-tandem-repeats
1
sequencing
1
repeat-detection
1
pacbio-sequencing
1
genome-analysis
1