pypi.org "rna" keyword
View the packages on the pypi.org package registry that are tagged with the "rna" keyword.
bingenetic 2.6
BinGenetic is a lightweight Python library that enables seamless conversion between binary data a...8 versions - Latest release: 2 days ago - 1 dependent repositories - 58 downloads last month - 1 stars on GitHub - 1 maintainer
warp-rna 0.3.0
PyTorch bindings for CUDA-Warp Recurrent Neural Aligner5 versions - Latest release: about 5 years ago - 1 dependent repositories - 120 downloads last month - 49 stars on GitHub - 1 maintainer
rna-torsionbert 0.1.4
Add your description here5 versions - Latest release: 3 days ago - 520 downloads last month - 4 stars on GitHub - 1 maintainer
rnaseeker 1.0.0
RNA-seq scripts and libraries1 version - Latest release: about 1 year ago - 47 downloads last month - 1 stars on GitHub - 1 maintainer
dna-analyser-ibp 3.6.0
DNA analyser API wrapper tool for Jupiter notebooks.33 versions - Latest release: over 1 year ago - 1 dependent repositories - 1.16 thousand downloads last month - 2 stars on GitHub - 1 maintainer
rnaglib 3.4.2
RNAglib: Tools for learning on the structure of RNA using 2.5D geometric representations84 versions - Latest release: 4 days ago - 1 dependent repositories - 3.13 thousand downloads last month - 12 stars on GitHub - 2 maintainers
rnpfind 1.2.6
Collect and generate RNA-RBP interaction data in various formats28 versions - Latest release: over 1 year ago - 1 dependent repositories - 462 downloads last month - 7 stars on GitHub - 1 maintainer
smallrnaseq 0.6.0 💰
Package for short RNA-seq analysis6 versions - Latest release: over 4 years ago - 1 dependent repositories - 148 downloads last month - 29 stars on GitHub - 1 maintainer
eltetrado 1.6.0
Find and classify tetrads and quadruplexes in DNA/RNA 3D structure43 versions - Latest release: 17 days ago - 1 dependent repositories - 1.69 thousand downloads last month - 18 stars on GitHub - 1 maintainer
rnasieve 0.1.4
A library for the statistical deconvolution of RNA bulk samples with single-cell references.5 versions - Latest release: over 3 years ago - 1 dependent repositories - 110 downloads last month - 18 stars on GitHub - 1 maintainer
Top 5.7% on pypi.org
31 versions - Latest release: 7 months ago - 1 dependent package - 3 dependent repositories - 1.73 thousand downloads last month - 927 stars on GitHub - 1 maintainer
graphein 1.7.7 💰
Protein & Interactomic Graph Construction for Machine Learning31 versions - Latest release: 7 months ago - 1 dependent package - 3 dependent repositories - 1.73 thousand downloads last month - 927 stars on GitHub - 1 maintainer
squarna 2.0.0
SQUARNA tool for RNA secondary structure prediction5 versions - Latest release: 5 days ago - 64 downloads last month - 14 stars on GitHub - 1 maintainer
barnaba 0.1.9
analyze nucleic acid 3D structures and MD trajectories6 versions - Latest release: over 2 years ago - 1 dependent repositories - 195 downloads last month - 41 stars on GitHub - 3 maintainers
dima-cli 5.0.9
A command-line tool that analyses the diversity and motifs of biological sequences51 versions - Latest release: 8 months ago - 1 dependent repositories - 5.53 thousand downloads last month - 0 stars on GitHub - 1 maintainer
trxtools 0.3.0
Python tools facilitating bioinformatic analysis of nascent transcripts and transcriptomic data.4 versions - Latest release: 3 months ago - 90 downloads last month - 2 stars on GitHub - 1 maintainer
unitvelo 0.2.5
Temporally unified RNA velocity inference17 versions - Latest release: over 2 years ago - 2 dependent repositories - 668 downloads last month - 26 stars on GitHub - 1 maintainer
Top 6.0% on pypi.org
28 versions - Latest release: 9 months ago - 4 dependent packages - 8 dependent repositories - 3.96 thousand downloads last month - 68 stars on GitHub - 2 maintainers
seqfold 0.7.18
Predict the minimum free energy structure of nucleic acids28 versions - Latest release: 9 months ago - 4 dependent packages - 8 dependent repositories - 3.96 thousand downloads last month - 68 stars on GitHub - 2 maintainers
moose-classifier 0.11
Alignment based taxonomic classifier6 versions - Latest release: 9 months ago - 1 dependent repositories - 186 downloads last month - 0 stars on GitHub - 1 maintainer
xpore 0.5.6
xpore is a python package for Nanopore data analysis of differential RNA modifications.11 versions - Latest release: over 4 years ago - 1 dependent repositories - 381 downloads last month - 147 stars on GitHub - 1 maintainer
awgan 0.1.0
code for model AWGAN10 versions - Latest release: about 3 years ago - 1 dependent repositories - 384 downloads last month - 7 stars on GitHub - 1 maintainer
chilife 1.1.5
A package for modeling non-canonical amino acid side chain ensembles.28 versions - Latest release: 8 days ago - 518 downloads last month - 10 stars on GitHub - 1 maintainer
pybarrnap 0.5.1
Python implementation of barrnap (Bacterial ribosomal RNA predictor)8 versions - Latest release: 3 months ago - 315 downloads last month - 17 stars on GitHub - 1 maintainer
Top 7.9% on pypi.org
161 versions - Latest release: 24 days ago - 1 dependent package - 2 dependent repositories - 2.71 thousand downloads last month - 151 stars on GitHub - 4 maintainers
scout-browser 4.99.0
Clinical DNA variant visualizer and browser161 versions - Latest release: 24 days ago - 1 dependent package - 2 dependent repositories - 2.71 thousand downloads last month - 151 stars on GitHub - 4 maintainers
rna-tools 3.23.1 💰
a toolbox to analyze structures and simulations of RNA97 versions - Latest release: 2 months ago - 1 dependent repositories - 1.19 thousand downloads last month - 138 stars on GitHub - 1 maintainer
hunana 1.0.7
HUNANA8 versions - Latest release: almost 4 years ago - 1 dependent repositories - 322 downloads last month - 9 stars on GitHub - 2 maintainers
bookend-rna 1.2.1
End-guided transcript assembler for short and long RNA-seq reads.17 versions - Latest release: over 1 year ago - 1 dependent repositories - 390 downloads last month - 16 stars on GitHub - 1 maintainer
rna-seq-normalization 0.3.0
Python package used for performing RNA-Seq normalization. It contains the three most popular tech...2 versions - Latest release: about 2 years ago - 37 downloads last month - 1 maintainer
circhemy 0.1.0
circhemy - The alchemy of circular RNA ID conversion1 version - Latest release: 12 months ago - 48 downloads last month - 0 stars on GitHub - 1 maintainer
cispliceai 1.1.1
CI-SpliceAI: Predicting splicing disruptions, trained on all isoforms3 versions - Latest release: about 2 years ago - 143 downloads last month - 429 stars on GitHub - 1 maintainer
cmdrnafold 0.0.1
Primitive Vienna RNA fold interface via the commandline.1 version - Latest release: over 1 year ago - 60 downloads last month - 0 stars on GitHub - 1 maintainer
ncrnabert 0.1.4
ncRNA language model5 versions - Latest release: 13 days ago - 166 downloads last month - 1 stars on GitHub - 1 maintainer
ga4gh-server 0.3.6
A reference implementation of the GA4GH API1 version - Latest release: about 8 years ago - 2 dependent repositories - 42 downloads last month - 97 stars on GitHub - 2 maintainers
starseqr 0.6.7
RNA-Fusion Calling with STAR24 versions - Latest release: about 7 years ago - 1 dependent repositories - 206 downloads last month - 17 stars on GitHub - 1 maintainer
ortho-seq-code 1.0.1
A PyPI package to compute multivariate tensor-based orthogonal polynomials for sequence data and ...3 versions - Latest release: about 4 years ago - 1 dependent repositories - 127 downloads last month - 17 stars on GitHub - 1 maintainer
rnapykin 0.3.0
drawing RNA secondary structure with style; instantly3 versions - Latest release: almost 2 years ago - 131 downloads last month - 5 stars on GitHub - 1 maintainer
rnalib 0.0.4
A python-based transcriptomics library4 versions - Latest release: 4 months ago - 129 downloads last month - 10 stars on GitHub - 1 maintainer
aldepyde 0.0.0a2
A package of chemistry and biochemical tools2 versions - Latest release: 4 months ago - 111 downloads last month - 1 maintainer
pytximport 0.12.0
A python implementation of `tximport` to transform transcript into gene counts14 versions - Latest release: 24 days ago - 382 downloads last month - 35 stars on GitHub - 1 maintainer
steprna 1.0.6
Align short RNA seqeuncing reads to determine the length of of overhang.9 versions - Latest release: about 2 years ago - 1 dependent repositories - 283 downloads last month - 4 stars on GitHub - 1 maintainer
pipeclip 2.0.10
PIPELINE FOR CLIP SEQ DATA11 versions - Latest release: almost 3 years ago - 1 dependent repositories - 202 downloads last month - 1 stars on GitHub - 1 maintainer
metarna 4.0.5
Finds target sites for the miRNAs in genomic sequences.6 versions - Latest release: almost 8 years ago - 2 dependent repositories - 220 downloads last month - 19 stars on GitHub - 1 maintainer
fast-ska 0.9.3
A fast Cython implementation of the "Streaming K-mer Assignment" algorithm initially described in...2 versions - Latest release: over 8 years ago - 1 dependent repositories - 35 downloads last month - 0 stars on GitHub - 1 maintainer
nucleopy 0.1.0
A library for creating and manipulating RNA and DNA sequences2 versions - Latest release: over 6 years ago - 1 dependent repositories - 110 downloads last month - 0 stars on GitHub - 1 maintainer
streq 0.0.2
Basic utilities for working with nucleotide sequence strings.2 versions - Latest release: almost 2 years ago - 3 dependent packages - 1 dependent repositories - 367 downloads last month - 0 stars on GitHub - 1 maintainer
bpforms 0.0.16
Unambiguous representation of modified DNA, RNA, and proteins12 versions - Latest release: almost 5 years ago - 7 dependent repositories - 265 downloads last month - 6 stars on GitHub - 2 maintainers
dnacol 0.3.2
Display FASTA/FASTQ/SAM/VCF files with colored DNA/RNA bases and quality scores (`dnacol`) or a p...3 versions - Latest release: over 7 years ago - 1 dependent repositories - 94 downloads last month - 20 stars on GitHub - 1 maintainer
ore 0.2.1
Associate outliers with rare variation34 versions - Latest release: over 6 years ago - 1 dependent repositories - 573 downloads last month - 1 stars on GitHub - 1 maintainer
stirplate 1.4.0
Stirplate Data Uploader5 versions - Latest release: over 8 years ago - 2 dependent repositories - 84 downloads last month - 0 stars on GitHub - 1 maintainer
rnaediting 0.0.7
Python scripts for filtering variant calls for finding rna editing specific events5 versions - Latest release: over 8 years ago - 1 dependent repositories - 89 downloads last month - 1 maintainer
ga4gh 0.3.5
A reference implementation of the GA4GH API18 versions - Latest release: about 8 years ago - 3 dependent repositories - 270 downloads last month - 97 stars on GitHub - 3 maintainers
Related Keywords
bioinformatics
25
dna
18
python
13
genomics
10
protein
8
rna-seq
8
biology
7
RNA
4
sequencing
4
genome-annotation
3
genetics
3
statistics
3
transcriptomics
3
variants
3
rna-structure
3
structural-biology
3
deep-learning
3
reference
2
alliance
2
ga4gh
2
DNA
2
rust
2
bioinformatics-tool
2
folding
2
single-cell
2
nucleic-acids
2
data-science
2
ngs
2
outliers
2
rna-folding
2
structure-prediction
2
virus
2
fusion
2
cli
2
rna-structure-prediction
2
wgs
2
pdb
2
global
2
health
2
data-analysis
2
rnaseq
2
reference-implementation
2
python3
2
server
2
biopython
1
chimeric
1
ncrna
1
language-model
1
SpliceAI
1
star
1
machine learning
1
pytorch-implementation
1
splicing
1
breakpoints
1
naming-pattern
1
ncRNA
1
language
1
fusions
1
model
1
transcriptome
1
research
1
simrna
1
rosetta
1
rna-tools
1
rna-puzzle
1
rna-pdb
1
wts
1
wes
1
vcf
1
variant triage
1
variant ranking
1
sv
1
str
1
snv
1
sma
1
phenopacket
1
panelapp
1
converter
1
conversion
1
circularrna
1
circular
1
circrna
1
circular RNA (circRNA) database
1
circular RNA (circRNA) ID conversion
1
circular RNA (circRNA) bioinformatics
1
circular RNA (circRNA) naming
1
circRNA
1
data science
1
bioinformaticsdata analysis
1
rna-sequencing
1
cpm
1
rpkm
1
normalization
1
tpm
1
assembler
1
amino
1
pcol
1
rnacol
1
dnacol
1
post-translational-modification
1