Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "rna" keyword
warp-rna 0.3.0
PyTorch bindings for CUDA-Warp Recurrent Neural Aligner5 versions - Latest release: about 4 years ago - 1 dependent repositories - 36 downloads last month - 47 stars on GitHub - 1 maintainer
cmdrnafold 0.0.1
Primitive Vienna RNA fold interface via the commandline.1 version - Latest release: 8 months ago - 23 downloads last month - 0 stars on GitHub - 1 maintainer
rnaglib 2.0.12
RNAglib: Tools for learning on the structure of RNA using 2.5D geometric representations16 versions - Latest release: 4 months ago - 1 dependent repositories - 137 downloads last month - 11 stars on GitHub - 2 maintainers
eltetrado 1.5.16
Find and classify tetrads and quadruplexes in DNA/RNA 3D structure38 versions - Latest release: 6 months ago - 1 dependent repositories - 371 downloads last month - 17 stars on GitHub - 1 maintainer
pybarrnap 0.5.0
Python implementation of barrnap (Bacterial ribosomal RNA predictor)7 versions - Latest release: 2 months ago - 55 downloads last month - 7 stars on GitHub - 1 maintainer
streq 0.0.2
Basic utilities for working with nucleotide sequence strings.2 versions - Latest release: 12 months ago - 3 dependent packages - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.0% on pypi.org
27 versions - Latest release: 12 months ago - 4 dependent packages - 8 dependent repositories - 1.46 thousand downloads last month - 68 stars on GitHub - 1 maintainer
seqfold 0.7.17
Predict the minimum free energy structure of nucleic acids27 versions - Latest release: 12 months ago - 4 dependent packages - 8 dependent repositories - 1.46 thousand downloads last month - 68 stars on GitHub - 1 maintainer
rnalib 0.0.3
A python-based transcriptomics library3 versions - Latest release: 2 months ago - 38 downloads last month - 1 stars on GitHub - 1 maintainer
Top 5.7% on pypi.org
30 versions - Latest release: 3 months ago - 1 dependent package - 3 dependent repositories - 1.21 thousand downloads last month - 927 stars on GitHub - 1 maintainer
graphein 1.7.6 💰
Protein & Interactomic Graph Construction for Machine Learning30 versions - Latest release: 3 months ago - 1 dependent package - 3 dependent repositories - 1.21 thousand downloads last month - 927 stars on GitHub - 1 maintainer
rnaseeker 1.0.0
RNA-seq scripts and libraries1 version - Latest release: 4 months ago - 20 downloads last month - 1 stars on GitHub - 1 maintainer
ortho-seq-code 1.0.1
A PyPI package to compute multivariate tensor-based orthogonal polynomials for sequence data and ...3 versions - Latest release: about 3 years ago - 1 dependent repositories - 32 downloads last month - 17 stars on GitHub - 1 maintainer
rnapykin 0.3.0
drawing RNA secondary structure with style; instantly3 versions - Latest release: about 1 year ago - 6 downloads last month - 5 stars on GitHub - 1 maintainer
rna-seq-normalization 0.3.0
Python package used for performing RNA-Seq normalization. It contains the three most popular tech...2 versions - Latest release: about 1 year ago - 4 downloads last month - 1 maintainer
trxtools 0.2.2
Python tools facilitating bioinformatic analysis of nascent transcripts and transcriptomic data.3 versions - Latest release: over 1 year ago - 14 downloads last month - 2 stars on GitHub - 1 maintainer
cispliceai 1.1.1
CI-SpliceAI: Predicting splicing disruptions, trained on all isoforms3 versions - Latest release: over 1 year ago - 133 downloads last month - 366 stars on GitHub - 1 maintainer
pipeclip 2.0.10
PIPELINE FOR CLIP SEQ DATA11 versions - Latest release: about 2 years ago - 1 dependent repositories - 93 downloads last month - 0 stars on GitHub - 1 maintainer
xpore 0.5.6
xpore is a python package for Nanopore data analysis of differential RNA modifications.11 versions - Latest release: over 3 years ago - 1 dependent repositories - 140 downloads last month - 127 stars on GitHub - 1 maintainer
stirplate 1.4.0
Stirplate Data Uploader5 versions - Latest release: over 7 years ago - 2 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
steprna 1.0.6
Align short RNA seqeuncing reads to determine the length of of overhang.9 versions - Latest release: about 1 year ago - 1 dependent repositories - 56 downloads last month - 4 stars on GitHub - 1 maintainer
smallrnaseq 0.6.0 💰
Package for short RNA-seq analysis6 versions - Latest release: over 3 years ago - 1 dependent repositories - 34 downloads last month - 29 stars on GitHub - 1 maintainer
rna-tools 3.20.3 💰
a toolbox to analyze structures and simulations of RNA89 versions - Latest release: 2 months ago - 1 dependent repositories - 671 downloads last month - 138 stars on GitHub - 1 maintainer
rnaediting 0.0.7
Python scripts for filtering variant calls for finding rna editing specific events5 versions - Latest release: over 7 years ago - 1 dependent repositories - 19 downloads last month - 1 maintainer
ore 0.2.1
Associate outliers with rare variation34 versions - Latest release: over 5 years ago - 1 dependent repositories - 257 downloads last month - 1 stars on GitHub - 1 maintainer
nucleopy 0.1.0
A library for creating and manipulating RNA and DNA sequences2 versions - Latest release: over 5 years ago - 1 dependent repositories - 21 downloads last month - 0 stars on GitHub - 1 maintainer
metarna 4.0.5
Finds target sites for the miRNAs in genomic sequences.6 versions - Latest release: almost 7 years ago - 2 dependent repositories - 63 downloads last month - 19 stars on GitHub - 1 maintainer
hunana 1.0.7
HUNANA8 versions - Latest release: about 3 years ago - 1 dependent repositories - 64 downloads last month - 6 stars on GitHub - 2 maintainers
ga4gh-server 0.3.6
A reference implementation of the GA4GH API1 version - Latest release: about 7 years ago - 2 dependent repositories - 24 downloads last month - 97 stars on GitHub - 2 maintainers
ga4gh 0.3.5
A reference implementation of the GA4GH API18 versions - Latest release: over 7 years ago - 3 dependent repositories - 62 downloads last month - 97 stars on GitHub - 3 maintainers
fast-ska 0.9.3
A fast Cython implementation of the "Streaming K-mer Assignment" algorithm initially described in...2 versions - Latest release: over 7 years ago - 1 dependent repositories - 19 downloads last month - 0 stars on GitHub - 1 maintainer
dnacol 0.3.2
Display FASTA/FASTQ/SAM/VCF files with colored DNA/RNA bases and quality scores (`dnacol`) or a p...3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 12 downloads last month - 19 stars on GitHub - 1 maintainer
dna-analyser-ibp 3.6.0
DNA analyser API wrapper tool for Jupiter notebooks.33 versions - Latest release: 8 months ago - 1 dependent repositories - 287 downloads last month - 1 stars on GitHub - 1 maintainer
dima-cli 4.1.3
A command-line tool that analyses the diversity and motifs of biological sequences48 versions - Latest release: over 1 year ago - 1 dependent repositories - 1.52 thousand downloads last month - 0 stars on GitHub - 1 maintainer
bpforms 0.0.16
Unambiguous representation of modified DNA, RNA, and proteins12 versions - Latest release: almost 4 years ago - 7 dependent repositories - 116 downloads last month - 6 stars on GitHub - 2 maintainers
bingenetic 2.1
convert binary data (in digital form) to genetic codes and further genetic codes back to binary data5 versions - Latest release: over 1 year ago - 1 dependent repositories - 20 downloads last month - 1 stars on GitHub - 1 maintainer
barnaba 0.1.9
analyze nucleic acid 3D structures and MD trajectories6 versions - Latest release: over 1 year ago - 1 dependent repositories - 59 downloads last month - 33 stars on GitHub - 3 maintainers
awgan 0.1.0
code for model AWGAN10 versions - Latest release: over 2 years ago - 1 dependent repositories - 106 downloads last month - 7 stars on GitHub - 1 maintainer
starseqr 0.6.7
RNA-Fusion Calling with STAR24 versions - Latest release: about 6 years ago - 1 dependent repositories - 85 downloads last month - 15 stars on GitHub - 1 maintainer
bookend-rna 1.2.1
End-guided transcript assembler for short and long RNA-seq reads.17 versions - Latest release: 8 months ago - 1 dependent repositories - 59 downloads last month - 13 stars on GitHub - 1 maintainer
rnpfind 1.2.6
Collect and generate RNA-RBP interaction data in various formats28 versions - Latest release: 5 months ago - 1 dependent repositories - 161 downloads last month - 6 stars on GitHub - 1 maintainer
unitvelo 0.2.5
Temporally unified RNA velocity inference17 versions - Latest release: over 1 year ago - 2 dependent repositories - 225 downloads last month - 21 stars on GitHub - 1 maintainer
circhemy 0.1.0
circhemy - The alchemy of circular RNA ID conversion1 version - Latest release: 23 days ago - 165 downloads last month - 0 stars on GitHub - 1 maintainer
ncrnabert 0.1.3
ncRNA language model4 versions - Latest release: 5 months ago - 32 downloads last month - 1 stars on GitHub - 1 maintainer
moose-classifier 0.9
Alignment based taxonomic classifier4 versions - Latest release: over 2 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 1 maintainer
rnasieve 0.1.4
A library for the statistical deconvolution of RNA bulk samples with single-cell references.5 versions - Latest release: almost 3 years ago - 1 dependent repositories - 23 downloads last month - 18 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
22
dna
15
python
12
genomics
10
rna-seq
7
biology
6
protein
6
RNA
4
sequencing
4
transcriptomics
3
deep-learning
3
genetics
3
genome-annotation
3
statistics
3
data-science
2
single-cell
2
rna-folding
2
folding
2
rust
2
DNA
2
rna-structure
2
cli
2
reference
2
alliance
2
ga4gh
2
ngs
2
global
2
structural-biology
2
nucleic-acids
2
health
2
reference-implementation
2
virus
2
server
2
variants
2
rnaseq
2
data-analysis
2
proteoform
1
post-translational modification
1
inverted-repeats
1
post-transcriptional modification
1
diversity
1
r-loops
1
palindrome
1
phosphorylation
1
methylation
1
crosslinks
1
dna-damage
1
epigenetics
1
post-transcriptional-regulation
1
post-translational-modification
1
Data Storage
1
DNA Data Storage
1
RNA Data Storage
1
Genetic Storage
1
interactome
1
rbns
1
k-mer
1
kmer
1
dnacol
1
rnacol
1
pcol
1
amino
1
acid
1
quality
1
phred
1
color
1
colour
1
bases
1
console
1
terminal
1
stdout
1
g4hunter
1
g4killer
1
p53
1
api-client
1
bioinformatics-tool
1
g4
1
data-storage
1
circRNA
1
circular RNA (circRNA) naming
1
circular RNA (circRNA) bioinformatics
1
circular RNA (circRNA) ID conversion
1
circular RNA (circRNA) database
1
circrna
1
circular
1
circularrna
1
conversion
1
converter
1
naming-pattern
1
ncRNA
1
language
1
model
1
language-model
1
ncrna
1
pytorch-implementation
1
ncbi
1
blast
1
classifier
1
alignments
1
kmer-counting
1