Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "neuroimaging" keyword

artbrain 1.0.1 💰
embed images into brain imaging data
3 versions - Latest release: over 8 years ago - 2 dependent repositories - 28 downloads last month - 0 stars on GitHub - 2 maintainers
padre 2.5.5
participant data repository
21 versions - Latest release: about 8 years ago - 2 dependent repositories - 83 downloads last month - 1 stars on GitHub - 2 maintainers
nidmviewer 0.1.3 💰
command line or server tool to view or compare nidm results.
3 versions - Latest release: almost 8 years ago - 2 dependent repositories - 10 downloads last month - 3 stars on GitHub - 2 maintainers
neural-fmri 1.2.5
Neuroimaging Analysis Library
31 versions - Latest release: over 7 years ago - 3 dependent repositories - 77 downloads last month - 2 stars on GitHub - 2 maintainers
neuropower 0.2.8
A package to perform power analyses for neuroimaging data
9 versions - Latest release: over 7 years ago - 3 dependent repositories - 41 downloads last month - 12 stars on GitHub - 4 maintainers
qtim_tools 0.1.12
A library for medical imaging analysis, with an emphasis on MRI, machine learning, and neuroimagi...
12 versions - Latest release: about 7 years ago - 21 downloads last month - 11 stars on GitHub - 2 maintainers
Top 7.0% on pypi.org
pynv 0.1.1
A Python library for interfacing with http://neurovault.org upload API
4 versions - Latest release: almost 7 years ago - 1 dependent package - 9 dependent repositories - 2.46 thousand downloads last month - 18 stars on GitHub - 4 maintainers
brainart 1.0.9 💰
make images out of brain imaging data
12 versions - Latest release: almost 7 years ago - 2 dependent repositories - 42 downloads last month - 4 stars on GitHub - 2 maintainers
brainsimulator 0.5.4
Nuclear brain imaging synthesis with python
4 versions - Latest release: over 6 years ago - 14 downloads last month - 0 stars on GitHub - 2 maintainers
airflow-imaging-plugins 2.4.3
Airflow plugins to support Neuroimaging tasks.
43 versions - Latest release: over 6 years ago - 1 dependent repositories - 151 downloads last month - 15 stars on GitHub - 2 maintainers
tmi_viewer 0.4.3
tmi_viewer
24 versions - Latest release: about 6 years ago - 84 downloads last month - 29 stars on GitHub - 2 maintainers
iptk 0.5.1
Python interface to the Imaging Pipeline Toolkit
9 versions - Latest release: almost 6 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 2 maintainers
cdn-fmri 0.0.2
Implementations of Causal Dynamic Network Analysis of fMRI
3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 22 downloads last month - 12 stars on GitHub - 2 maintainers
scdn 0.0.2
Estimating high dimensional ODE models from convoluted observations with an application to fMRI
3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 15 downloads last month - 3 stars on GitHub - 2 maintainers
mapbrain 0.9.3
Brain image feature extraction and visualization
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 2 maintainers
neuro-tools 0.1.1
Neuroimaging tools to help with BIDS, XNAT, workflows, etc.
2 versions - Latest release: over 5 years ago - 1 dependent repositories - 20 downloads last month - 0 stars on GitHub - 2 maintainers
p3proc 0.1.2
The p3 fmri processing pipeline
2 versions - Latest release: over 5 years ago - 1 dependent repositories - 29 downloads last month - 0 stars on GitHub - 4 maintainers
bids-events 0.0.5
A package to export events to be used in BIDS datasets.
4 versions - Latest release: over 5 years ago - 1 dependent repositories - 28 downloads last month - 0 stars on GitHub - 1 maintainer
qmvpa 0.54
my MVPA package
9 versions - Latest release: over 5 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 2 maintainers
tfce-mediation 1.5.3
TFCE_mediation
37 versions - Latest release: over 5 years ago - 1 dependent repositories - 75 downloads last month - 29 stars on GitHub - 4 maintainers
brainview 0.0.1 💰
Visualize morphometry neuroimaging data on 3D brain meshes.
1 version - Latest release: over 5 years ago - 1 dependent repositories - 21 downloads last month - 4 stars on GitHub - 2 maintainers
fmristats 0.1.1
Modelling the data and not the images in FMRI
8 versions - Latest release: about 5 years ago - 1 dependent repositories - 92 downloads last month - 2 maintainers
nii2png 0.3.0 💰
A lightweight neuroimaging .nii to .png converter
2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 135 downloads last month - 109 stars on GitHub - 2 maintainers
dyneusr-fire 0.0.3
A command line interface for DyNeuSR
2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 11 downloads last month - 2 stars on GitHub - 2 maintainers
deepneuro 0.2.3
DeepNeuro: A deep learning python package for neuroimaging data.
6 versions - Latest release: almost 5 years ago - 1 dependent repositories - 26 downloads last month - 121 stars on GitHub - 4 maintainers
niatlas 0.0.1
atlas classes and methods for neuroimaging
1 version - Latest release: almost 5 years ago - 1 dependent repositories - 17 downloads last month - 2 stars on GitHub - 2 maintainers
bxl 0.3.4
Basic library for interacting with the REST interface of XNAT.
10 versions - Latest release: almost 5 years ago - 114 downloads last month - 2 maintainers
Top 9.3% on pypi.org
brainiak 0.9.1
Brain Imaging Analysis Kit
14 versions - Latest release: over 4 years ago - 5 dependent repositories - 130 downloads last month - 322 stars on GitHub - 8 maintainers
dstrf 0.2
MEG/EEG source localization tool
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
pybasc 0.6.1
Bootstrap Analysis for Stable Clustering in Python
5 versions - Latest release: over 4 years ago - 1 dependent repositories - 19 downloads last month - 24 stars on GitHub - 2 maintainers
brainload 0.3.5 💰
Load FreeSurfer brain imaging data with minimal cognitive load.
8 versions - Latest release: over 4 years ago - 2 dependent repositories - 64 downloads last month - 9 stars on GitHub - 2 maintainers
neurocombat-sklearn 0.1.3
Harmonizing neuroimaging data across sites. Implementation of neurocombat using sklearn format
6 versions - Latest release: over 4 years ago - 1 dependent repositories - 239 downloads last month - 19 stars on GitHub - 2 maintainers
django-dicom 0.0.4
A simple Django app to manage DICOM files.
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 64 downloads last month - 6 stars on GitHub - 2 maintainers
django-mri 0.0.4
A reusable Django app to manage MRI data.
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 48 downloads last month - 7 stars on GitHub - 2 maintainers
mnisiscom 0.4.0
A simple command line tool and GUI for computing subtraction ictal SPECT coregistered to MRI (SIS...
1 version - Latest release: over 4 years ago - 1 dependent repositories - 18 downloads last month - 3 stars on GitHub - 1 maintainer
gema-utils 0.0.1
A python suite to complement CLARA (NVIDIA's healthcare application)
1 version - Latest release: about 4 years ago - 1 dependent repositories - 17 downloads last month - 2 maintainers
nanslice 1.0.0
Scripts to slice and display neuroimages (probably stored in nifti format)
3 versions - Latest release: about 4 years ago - 1 dependent repositories - 28 downloads last month - 39 stars on GitHub - 2 maintainers
nibetaseries 0.6.0
BetaSeries Correlations implemented in Nipype
20 versions - Latest release: about 4 years ago - 1 dependent repositories - 80 downloads last month - 29 stars on GitHub - 2 maintainers
conpagnon 2.0.11
Easy Resting State Analysis with Python
11 versions - Latest release: almost 4 years ago - 45 downloads last month - 3 stars on GitHub - 2 maintainers
fmri_delay 0.1.4
Tool for measuring delay between sparse transitions in fmri BOLD signals
6 versions - Latest release: almost 4 years ago - 27 downloads last month - 2 maintainers
pylabber 0.1.0
A Django app to manage neuroscience research
6 versions - Latest release: almost 4 years ago - 1 dependent repositories - 60 downloads last month - 6 stars on GitHub - 1 maintainer
ciftify 2.3.3
The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
3 versions - Latest release: almost 4 years ago - 98 downloads last month - 102 stars on GitHub - 1 maintainer
easylearn 0.1.20a0
This project is designed for machine learning in resting-state fMRI field
17 versions - Latest release: over 3 years ago - 1 dependent repositories - 180 downloads last month - 35 stars on GitHub - 2 maintainers
brainweb 1.6.2 💰
BrainWeb-based multimodal models of 20 normal brains
18 versions - Latest release: over 3 years ago - 1 dependent package - 3 dependent repositories - 245 downloads last month - 27 stars on GitHub - 2 maintainers
bimodneurocnn 0.1.0
Tools for bimodal training of CNNs, i.e. concurrent training with two data types
1 version - Latest release: over 3 years ago - 11 downloads last month - 687 stars on GitHub - 2 maintainers
freesurfer-stats 1.2.1
Python Library to Read FreeSurfer's cortical parcellation anatomical statistics
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 192 downloads last month - 12 stars on GitHub - 2 maintainers
dmipy 1.0.5
dmipy: diffusion microstructure imaging in python
4 versions - Latest release: over 3 years ago - 3 dependent repositories - 78 downloads last month - 92 stars on GitHub - 4 maintainers
convert-source 0.1.1
Converts and organises source MR image data-sets in accordance with the Brain Imaging Data Struct...
15 versions - Latest release: about 3 years ago - 1 dependent repositories - 15 downloads last month - 1 stars on GitHub - 2 maintainers
dyconnmap 1.0.4
A dynamic connectome mapping module in Python
4 versions - Latest release: about 3 years ago - 1 dependent repositories - 32 downloads last month - 96 stars on GitHub - 2 maintainers
qipype 3.2
nipype interfaces to QUantitative Imaging Tools
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 12 downloads last month - 55 stars on GitHub - 2 maintainers
nondefaced-detector 0.1.3
A package to detect if an MRI Volume has been defaced.
4 versions - Latest release: about 3 years ago - 1 dependent repositories - 8 downloads last month - 6 stars on GitHub - 2 maintainers
dcdf 0.1.8
Package to compute DCDF for nifti formatted MRI data.
9 versions - Latest release: about 3 years ago - 1 dependent repositories - 26 downloads last month - 0 stars on GitHub - 1 maintainer
neurocombat 0.2.12
ComBat algorithm for harmonizing multi-site imaging data
15 versions - Latest release: almost 3 years ago - 1 dependent repositories - 374 downloads last month - 96 stars on GitHub - 2 maintainers
freesurfer-surface 2.0.0
Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format
10 versions - Latest release: almost 3 years ago - 3 dependent repositories - 122 downloads last month - 8 stars on GitHub - 2 maintainers
itk-skullstripping 0.1.0
Automatic skull-stripping for neuroimage analysis
2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 153 downloads last month - 11 stars on GitHub - 4 maintainers
mediamaker 0.3.1
Media Maker Python SDK for Blue Brain BioExplorer
2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 11 downloads last month - 62 stars on GitHub - 2 maintainers
freesurfer-volume-reader 2.1.1
Python script & library to read hippocampal subfield volumescomputed by Freesurfer & ASHS
8 versions - Latest release: almost 3 years ago - 1 dependent repositories - 85 downloads last month - 4 stars on GitHub - 2 maintainers
Top 2.7% on pypi.org
pydra 0.16.2
Pydra dataflow engine
37 versions - Latest release: almost 3 years ago - 16 dependent packages - 16 dependent repositories - 2.47 thousand downloads last month - 118 stars on GitHub - 7 maintainers
fslfeatsetup 0.4.8 removed
a small set of tools for create FSL FEAT .fsf configuration files
15 versions - Latest release: almost 3 years ago - 1 dependent repositories - 130 downloads last month - 1 stars on GitHub - 2 maintainers
cbicqc 2021.7.8 💰
MRI phantom quality control tool
4 versions - Latest release: almost 3 years ago - 72 downloads last month - 0 stars on GitHub - 2 maintainers
rust-dtw 0.1.14
A rust implementation of dynamic time warping with python bindings!
4 versions - Latest release: almost 3 years ago - 1 dependent repositories - 145 downloads last month - 21 stars on GitHub - 2 maintainers
dwiprep 0.1.5
DWIprep is a robust and easy-to-use preprocessing pipeline for diffusion-weighted imaging of vari...
1 version - Latest release: almost 3 years ago - 2 dependent repositories - 9 downloads last month - 1 stars on GitHub - 2 maintainers
d2b-dcm2niix 1.0.0
Dcm2niix plugin for the d2b package
1 version - Latest release: over 2 years ago - 1 dependent repositories - 6 downloads last month - 0 stars on GitHub - 2 maintainers
d2b-asl 2.0.0
Plugin for the d2b package to handle ASL data
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 2 maintainers
nibabies-wrapper 99.99.99
A wrapper for generating Docker and Apptainer/Singularity commands for simpler NiBabies usage
26 versions - Latest release: over 2 years ago - 1 dependent repositories - 175 downloads last month - 19 stars on GitHub - 2 maintainers
d2b-yaml 1.0.0
Plugin for the d2b package to YAML configuration files
1 version - Latest release: over 2 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 2 maintainers
d2b-compile 1.1.0
compile-dcm2bids-config plugin for the d2b package
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 2 maintainers
d2b-sidecarless-nii 1.0.0
Plugin for the d2b package to handle NIfTI images without sidecars
1 version - Latest release: over 2 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 2 maintainers
cubids-bond-fork 0.1.0
BIDS On Disk Editor
1 version - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 73 downloads last month - 18 stars on GitHub - 1 maintainer
pipetography 0.3.12
Pre/Post-processing pipeline for tractography wrapped around nipype and mrtrix3
19 versions - Latest release: over 2 years ago - 1 dependent repositories - 149 downloads last month - 4 stars on GitHub - 4 maintainers
evaler 0.0.2
Evaler.
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 26 downloads last month - 3 stars on GitHub - 1 maintainer
pydcm2niix 1.0.20220116
DCM2NIIX Python package
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 16 downloads last month - 805 stars on GitHub - 1 maintainer
neurodatapub 0.4
NeuroDataPub: Tool built for publication of BIDS datasets of the NCCR-Synapsy
4 versions - Latest release: over 2 years ago - 1 dependent repositories - 28 downloads last month - 2 stars on GitHub - 2 maintainers
lesion-metrics 0.1.12
metrics for evaluating lesion segmentations
13 versions - Latest release: over 2 years ago - 1 dependent repositories - 78 downloads last month - 2 stars on GitHub - 2 maintainers
nipype-generate-fieldmaps 0.2.4 💰
Nipype workflow to generate fieldmaps from EPI acquisitions with differing phase-encoding directions
6 versions - Latest release: over 2 years ago - 1 dependent repositories - 5 downloads last month - 1 stars on GitHub - 2 maintainers
niphlem 0.0.3
Physiological Log Extraction for Modelling in Neuroimaging
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 17 downloads last month - 3 stars on GitHub - 2 maintainers
d2b-nth-of-type 1.0.1
Plugin for the d2b package to deterministically uniquify different acquisition runs
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 2 maintainers
confounds 0.1.3
Conquering confounds and covariates in machine learning
6 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 68 downloads last month - 38 stars on GitHub - 2 maintainers
cmb 0.0.7
Cere-MEG-Bellum (CMB) - Cerbellum segmentation and forward solution calculation
7 versions - Latest release: about 2 years ago - 26 downloads last month - 2 maintainers
nii-info 1.0.1 💰
Display NIfTI image information in a tabular format
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 2 maintainers
nii-plot 1.0.0 💰
Plot mean NIfTI timeseries
2 versions - Latest release: about 2 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
nilearn-extra 0.1.1
Drop-in extra functionalities for nilearn (statistics for neuroimaging in Python)
2 versions - Latest release: almost 2 years ago - 16 downloads last month - 1 stars on GitHub - 2 maintainers
dds4xnat 0.1
Renames the scan type for MR sessions stored on XNAT using the DeepDicomSort algorithm
1 version - Latest release: almost 2 years ago - 9 downloads last month - 0 stars on GitHub - 1 maintainer
hiwenet 0.4.5
Histogram-weighted Networks for Feature Extraction and Advance Analysis in Neuroscience
7 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 326 downloads last month - 9 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
dcm2niix 1.0.20220715
DCM2NIIX Python package
2 versions - Latest release: almost 2 years ago - 8 dependent packages - 3 dependent repositories - 4.48 thousand downloads last month - 805 stars on GitHub - 2 maintainers
dyneusr 0.3.11
Dynamical Neural Spatiotemporal Representations.
12 versions - Latest release: almost 2 years ago - 3 dependent repositories - 85 downloads last month - 42 stars on GitHub - 2 maintainers
react-fmri 0.1.7
A Python package that implements REACT: Receptor-Enriched Analysis of Functional Connectivity by ...
10 versions - Latest release: almost 2 years ago - 1 dependent repositories - 67 downloads last month - 11 stars on GitHub - 4 maintainers
nidatasets 0.1.0
Convenient access to preprocessed brain imaging data.
2 versions - Latest release: almost 2 years ago - 20 downloads last month - 0 stars on GitHub - 2 maintainers
surface-spaces 0.1.0
Convenient conversion between surface spaces.
1 version - Latest release: almost 2 years ago - 14 downloads last month - 0 stars on GitHub - 2 maintainers
mne-ari 0.1.2
All-Resolutions Inference for M/EEG
2 versions - Latest release: over 1 year ago - 1 dependent repositories - 16 downloads last month - 15 stars on GitHub - 2 maintainers
d2b 1.4.2
Organize data in the BIDS format
21 versions - Latest release: over 1 year ago - 6 dependent repositories - 215 downloads last month - 0 stars on GitHub - 2 maintainers
simplebrainviewer 0.3.2
A simple brain viewer using matplotlib
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 1 maintainer
mecons 0.0.3
MeCons project for measuring consciousness.
1 version - Latest release: over 1 year ago - 5 downloads last month - 0 stars on GitHub - 2 maintainers
pyrobex 0.4.3
python bindings for ROBEX brain extraction
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 4 stars on GitHub - 1 maintainer
nqdc 0.0.3
Download neuroimaging articles and extract text and stereotactic coordinates.
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 39 downloads last month - 0 stars on GitHub - 2 maintainers
Top 8.1% on pypi.org
brainstat 0.4.2
A toolbox for statistical analysis of neuroimaging data
17 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 558 downloads last month - 61 stars on GitHub - 4 maintainers
Top 3.4% on pypi.org
mne-bids 0.11.1
MNE-BIDS: Organizing MEG, EEG, and iEEG data according to the BIDS specification and facilitating...
16 versions - Latest release: over 1 year ago - 9 dependent packages - 50 dependent repositories - 17 thousand downloads last month - 120 stars on GitHub - 3 maintainers
nobrainer-zoo 0.2.0
A framework for inference and re-training of pretrained neuroimaging models
1 version - Latest release: over 1 year ago - 6 downloads last month - 8 stars on GitHub - 2 maintainers
photonai-neuro 0.2.0
Add-on module to simplify machine learning analyses for multimodal Magnetic Resonance Imaging (MR...
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 25 downloads last month - 7 stars on GitHub - 6 maintainers
pyhaze 0.1.3 💰
Fast smoothing of per-vertex data on triangular meshes.
4 versions - Latest release: over 1 year ago - 31 downloads last month - 1 stars on GitHub - 1 maintainer
Related Keywords
neuroscience 74 python 66 mri 37 fmri 37 brain 36 bids 27 nifti 20 machine-learning 19 brain-imaging 16 eeg 15 fsl 12 statistics 12 meg 11 dicom 11 freesurfer 10 MRI 10 machine learning 9 electroencephalography 9 mri-images 9 medical-imaging 9 EEG 9 MEG 9 pydra 9 surface 8 research 7 nii 7 magnetoencephalography 7 dcm2niix 7 deep-learning 7 python3 7 visualization 7 bids-format 7 dcm 6 meta-analysis 6 quality-control 6 cortex 6 hacktoberfest 6 nilearn 6 nifti-format 5 jpeg-image 5 image-processing 5 brainweb 5 fMRI 5 registration 5 electrocorticography 5 jpeg 5 nitrc 5 mricrogl 5 dti 5 pet 5 deep learning 5 dicom-images 5 BIDS 5 gz 5 imaging 4 scikit-learn 4 nipype 4 preprocessing 4 neuroinformatics 4 nibabel 4 segmentation 4 cli 4 pytorch 4 tool 4 d2b 4 plugin 4 workflows 4 analysis 4 fmri-preprocessing 4 Neuroimaging 4 ants 4 brain-connectivity 3 data-standards 3 ecog 3 learning 3 neuroimaging-analysis 3 mri-brain 3 slurm 3 grid 3 nipy 3 parcellation 3 cluster 3 tractography 3 harmonization 3 science 3 combat 3 mesh 3 FSL 3 anatomical-mri 3 research-data-management 3 voxel 3 vertex 3 deeplearning 3 ECoG 3 skull-stripping 3 data 3 brain-networks 3 repository 3 django 3 normalization 3