Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "neuroimaging" keyword

actflow 0.3.4
The Brain Activity Flow (Actflow) Toolbox. Tools to quantify the relationship between connectivit...
7 versions - Latest release: 5 months ago - 1 dependent repositories - 70 downloads last month - 33 stars on GitHub - 3 maintainers
actflowtoolbox 0.3.0 removed
The Brain Activity Flow (Actflow) Toolbox. Tools to quantify the relationship between connectivit...
1 version - Latest release: 7 months ago - 28 stars on GitHub - 2 maintainers
airflow-imaging-plugins 2.4.3
Airflow plugins to support Neuroimaging tasks.
43 versions - Latest release: over 6 years ago - 1 dependent repositories - 151 downloads last month - 15 stars on GitHub - 2 maintainers
alcoholic-tfe22540 0.1.12
Framework of my master thesis on the effect of withdrawal on the white matter of alcoholic patien...
9 versions - Latest release: 10 months ago - 36 downloads last month - 0 stars on GitHub - 1 maintainer
artbrain 1.0.1 💰
embed images into brain imaging data
3 versions - Latest release: over 8 years ago - 2 dependent repositories - 28 downloads last month - 0 stars on GitHub - 2 maintainers
ascnii 0.0.1.dev21
View brain images in terminal using ASCII characters
12 versions - Latest release: 17 days ago - 90 downloads last month - 5 stars on GitHub - 2 maintainers
bcblib 0.3.4
32 versions - Latest release: about 1 year ago - 1 dependent repositories - 154 downloads last month - 2 stars on GitHub - 2 maintainers
Top 9.6% on pypi.org
bdpy 0.21.1
Brain decoder toolbox for Python
16 versions - Latest release: 5 months ago - 4 dependent repositories - 180 downloads last month - 31 stars on GitHub - 1 maintainer
bids2table 0.1.0
Efficiently index large-scale BIDS datasets and derivatives
3 versions - Latest release: 9 days ago - 1 dependent repositories - 410 downloads last month - 11 stars on GitHub - 2 maintainers
Top 8.7% on pypi.org
bidscoin 4.3.2
Converts and organises raw MRI data-sets according to the Brain Imaging Data Structure (BIDS)
34 versions - Latest release: about 1 month ago - 2 dependent repositories - 484 downloads last month - 117 stars on GitHub - 1 maintainer
bids-events 0.0.5
A package to export events to be used in BIDS datasets.
4 versions - Latest release: over 5 years ago - 1 dependent repositories - 28 downloads last month - 0 stars on GitHub - 1 maintainer
bidskit 2024.5.3 💰
BIDS curation toolkit
29 versions - Latest release: 7 days ago - 1 dependent repositories - 302 downloads last month - 59 stars on GitHub - 1 maintainer
bidsmreye 0.3.1
bids app using deepMReye to decode eye motion for fMRI time series data
4 versions - Latest release: over 1 year ago - 37 downloads last month - 5 stars on GitHub - 1 maintainer
Top 6.7% on pypi.org
bidsschematools 0.8.0
Python tools for working with the BIDS schema.
9 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 26 thousand downloads last month - 252 stars on GitHub - 4 maintainers
Top 2.7% on pypi.org
bids-validator 1.14.5
Validator for the Brain Imaging Data Structure
82 versions - Latest release: about 1 month ago - 4 dependent packages - 87 dependent repositories - 33.9 thousand downloads last month - 176 stars on GitHub - 4 maintainers
bimodneurocnn 0.1.0
Tools for bimodal training of CNNs, i.e. concurrent training with two data types
1 version - Latest release: over 3 years ago - 11 downloads last month - 687 stars on GitHub - 2 maintainers
bioexplorer 1.7.1
Python API for the Blue Brain BioExplorer
12 versions - Latest release: 5 months ago - 2 dependent repositories - 53 downloads last month - 62 stars on GitHub - 4 maintainers
bjdata 0.4.1
Binary JData and UBJSON encoder/decoder
11 versions - Latest release: 7 months ago - 1 dependent repositories - 113 downloads last month - 1 stars on GitHub - 2 maintainers
borsar 0.1
tools for electrophysiological analysis, especially cluster-based tests.
1 version - Latest release: 6 months ago - 1 dependent package - 27 downloads last month - 8 stars on GitHub - 2 maintainers
brainart 1.0.9 💰
make images out of brain imaging data
12 versions - Latest release: almost 7 years ago - 2 dependent repositories - 42 downloads last month - 4 stars on GitHub - 2 maintainers
Top 3.9% on pypi.org
braindecode 0.8.1
Deep learning software to decode EEG, ECG or MEG signals
52 versions - Latest release: 6 months ago - 2 dependent packages - 15 dependent repositories - 3.55 thousand downloads last month - 687 stars on GitHub - 3 maintainers
brainextractor 0.2.2
brain extraction in python
3 versions - Latest release: 12 months ago - 212 downloads last month - 30 stars on GitHub - 2 maintainers
Top 9.3% on pypi.org
brainiak 0.9.1
Brain Imaging Analysis Kit
14 versions - Latest release: over 4 years ago - 5 dependent repositories - 130 downloads last month - 322 stars on GitHub - 8 maintainers
brainlit 0.3.6
Code to process and analyze brainlit data
11 versions - Latest release: 12 months ago - 1 dependent repositories - 157 downloads last month - 24 stars on GitHub - 2 maintainers
brainload 0.3.5 💰
Load FreeSurfer brain imaging data with minimal cognitive load.
8 versions - Latest release: over 4 years ago - 2 dependent repositories - 64 downloads last month - 9 stars on GitHub - 2 maintainers
brainplotlib 1.0.0
A lightweight package to plot brain surfaces with Python.
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 42 downloads last month - 31 stars on GitHub - 1 maintainer
brainsimulator 0.5.4
Nuclear brain imaging synthesis with python
4 versions - Latest release: over 6 years ago - 14 downloads last month - 0 stars on GitHub - 2 maintainers
Top 8.1% on pypi.org
brainstat 0.4.2
A toolbox for statistical analysis of neuroimaging data
17 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 558 downloads last month - 61 stars on GitHub - 4 maintainers
brainview 0.0.1 💰
Visualize morphometry neuroimaging data on 3D brain meshes.
1 version - Latest release: over 5 years ago - 1 dependent repositories - 21 downloads last month - 4 stars on GitHub - 2 maintainers
brainweb 1.6.2 💰
BrainWeb-based multimodal models of 20 normal brains
18 versions - Latest release: over 3 years ago - 1 dependent package - 3 dependent repositories - 245 downloads last month - 27 stars on GitHub - 2 maintainers
bsl 0.6.4
Real-time framework for online neuroscience research through LSL-compatible devices.
15 versions - Latest release: 8 months ago - 394 downloads last month - 0 stars on GitHub - 2 maintainers
bxl 0.3.4
Basic library for interacting with the REST interface of XNAT.
10 versions - Latest release: almost 5 years ago - 114 downloads last month - 2 maintainers
cbicqc 2021.7.8 💰
MRI phantom quality control tool
4 versions - Latest release: almost 3 years ago - 72 downloads last month - 0 stars on GitHub - 2 maintainers
cdn-fmri 0.0.2
Implementations of Causal Dynamic Network Analysis of fMRI
3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 22 downloads last month - 12 stars on GitHub - 2 maintainers
ciftify 2.3.3
The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
3 versions - Latest release: almost 4 years ago - 98 downloads last month - 102 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
clinica 0.8.1
Software platform for clinical neuroimaging studies
38 versions - Latest release: 15 days ago - 1 dependent package - 1 dependent repositories - 515 downloads last month - 213 stars on GitHub - 4 maintainers
clinicadl 1.6.1
Framework for the reproducible processing of neuroimaging data with deep learning methods
33 versions - Latest release: about 1 month ago - 1 dependent repositories - 368 downloads last month - 152 stars on GitHub - 4 maintainers
clinica-pydra-ants 0.1.1
Pydra tasks for ANTs designed for Clinica
2 versions - Latest release: 14 days ago - 210 downloads last month - 0 stars on GitHub - 2 maintainers
clinica-pydra-freesurfer 0.1.0
Pydra tasks for FreeSurfer designed for Clinica
1 version - Latest release: 10 days ago - 157 downloads last month - 5 stars on GitHub - 6 maintainers
clinica-pydra-fsl 0.1.0
Pydra tasks for FSL designed for Clinica
1 version - Latest release: 10 days ago - 156 downloads last month - 3 stars on GitHub - 5 maintainers
cmb 0.0.7
Cere-MEG-Bellum (CMB) - Cerbellum segmentation and forward solution calculation
7 versions - Latest release: about 2 years ago - 26 downloads last month - 2 maintainers
compose-runner 0.4.6
A package for running neurosynth-compose analyses
17 versions - Latest release: 3 months ago - 188 downloads last month - 0 stars on GitHub - 2 maintainers
confounds 0.1.3
Conquering confounds and covariates in machine learning
6 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 68 downloads last month - 38 stars on GitHub - 2 maintainers
conpagnon 2.0.11
Easy Resting State Analysis with Python
11 versions - Latest release: almost 4 years ago - 45 downloads last month - 3 stars on GitHub - 2 maintainers
convert-source 0.1.1
Converts and organises source MR image data-sets in accordance with the Brain Imaging Data Struct...
15 versions - Latest release: about 3 years ago - 1 dependent repositories - 15 downloads last month - 1 stars on GitHub - 2 maintainers
cubids 1.1.0
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
10 versions - Latest release: 28 days ago - 23 downloads last month - 18 stars on GitHub - 4 maintainers
cubids-bond-fork 0.1.0
BIDS On Disk Editor
1 version - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 73 downloads last month - 18 stars on GitHub - 1 maintainer
d2b 1.4.2
Organize data in the BIDS format
21 versions - Latest release: over 1 year ago - 6 dependent repositories - 215 downloads last month - 0 stars on GitHub - 2 maintainers
d2b-asl 2.0.0
Plugin for the d2b package to handle ASL data
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 2 maintainers
d2b-compile 1.1.0
compile-dcm2bids-config plugin for the d2b package
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 2 maintainers
d2b-dcm2niix 1.0.0
Dcm2niix plugin for the d2b package
1 version - Latest release: over 2 years ago - 1 dependent repositories - 6 downloads last month - 0 stars on GitHub - 2 maintainers
d2b-nth-of-type 1.0.1
Plugin for the d2b package to deterministically uniquify different acquisition runs
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 2 maintainers
d2b-sidecarless-nii 1.0.0
Plugin for the d2b package to handle NIfTI images without sidecars
1 version - Latest release: over 2 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 2 maintainers
d2b-yaml 1.0.0
Plugin for the d2b package to YAML configuration files
1 version - Latest release: over 2 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 2 maintainers
Top 9.7% on pypi.org
datalad-neuroimaging 0.3.5
DataLad extension package for neuro/medical imaging
22 versions - Latest release: about 2 months ago - 2 dependent repositories - 696 downloads last month - 17 stars on GitHub - 6 maintainers
dcdf 0.1.8
Package to compute DCDF for nifti formatted MRI data.
9 versions - Latest release: about 3 years ago - 1 dependent repositories - 26 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.8% on pypi.org
dcm2bids 3.1.1
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
24 versions - Latest release: 7 months ago - 7 dependent repositories - 1 thousand downloads last month - 147 stars on GitHub - 4 maintainers
Top 4.4% on pypi.org
dcm2niix 1.0.20220715
DCM2NIIX Python package
2 versions - Latest release: almost 2 years ago - 8 dependent packages - 3 dependent repositories - 4.48 thousand downloads last month - 805 stars on GitHub - 2 maintainers
dds4xnat 0.1
Renames the scan type for MR sessions stored on XNAT using the DeepDicomSort algorithm
1 version - Latest release: almost 2 years ago - 9 downloads last month - 0 stars on GitHub - 1 maintainer
deepbet 0.0.2
Fast brain extraction using neural networks
2 versions - Latest release: 9 months ago - 1 dependent repositories - 176 downloads last month - 16 stars on GitHub - 2 maintainers
deepneuro 0.2.3
DeepNeuro: A deep learning python package for neuroimaging data.
6 versions - Latest release: almost 5 years ago - 1 dependent repositories - 26 downloads last month - 121 stars on GitHub - 4 maintainers
deepsurfer 0.1.1a4
Learning-Based Utilities for Neuroimage Analysis
6 versions - Latest release: 2 months ago - 381 downloads last month - 4 maintainers
Top 1.4% on pypi.org
dipy 1.9.0
Diffusion MRI Imaging in Python
27 versions - Latest release: 2 months ago - 38 dependent packages - 204 dependent repositories - 31.8 thousand downloads last month - 651 stars on GitHub - 4 maintainers
django-dicom 0.0.4
A simple Django app to manage DICOM files.
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 64 downloads last month - 6 stars on GitHub - 2 maintainers
django-mri 0.0.4
A reusable Django app to manage MRI data.
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 48 downloads last month - 7 stars on GitHub - 2 maintainers
dmipy 1.0.5
dmipy: diffusion microstructure imaging in python
4 versions - Latest release: over 3 years ago - 3 dependent repositories - 78 downloads last month - 92 stars on GitHub - 4 maintainers
dstrf 0.2
MEG/EEG source localization tool
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
dwiprep 0.1.5
DWIprep is a robust and easy-to-use preprocessing pipeline for diffusion-weighted imaging of vari...
1 version - Latest release: almost 3 years ago - 2 dependent repositories - 9 downloads last month - 1 stars on GitHub - 2 maintainers
dyconnmap 1.0.4
A dynamic connectome mapping module in Python
4 versions - Latest release: about 3 years ago - 1 dependent repositories - 32 downloads last month - 96 stars on GitHub - 2 maintainers
dyneusr 0.3.11
Dynamical Neural Spatiotemporal Representations.
12 versions - Latest release: almost 2 years ago - 3 dependent repositories - 85 downloads last month - 42 stars on GitHub - 2 maintainers
dyneusr-fire 0.0.3
A command line interface for DyNeuSR
2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 11 downloads last month - 2 stars on GitHub - 2 maintainers
easylearn 0.1.20a0
This project is designed for machine learning in resting-state fMRI field
17 versions - Latest release: over 3 years ago - 1 dependent repositories - 180 downloads last month - 35 stars on GitHub - 2 maintainers
evaler 0.0.2
Evaler.
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 26 downloads last month - 3 stars on GitHub - 1 maintainer
face-rhythm 0.2.5
A pipeline for analysis of facial behavior using optical flow
10 versions - Latest release: 15 days ago - 134 downloads last month - 3 stars on GitHub - 2 maintainers
Top 5.0% on pypi.org
fitz 0.0.1.dev1
Fitz: Workflow Mangement for neuroimaging data.
3 versions - Latest release: 9 months ago - 54 dependent packages - 934 dependent repositories - 107 thousand downloads last month - 13 stars on GitHub - 2 maintainers
fmri_delay 0.1.4
Tool for measuring delay between sparse transitions in fmri BOLD signals
6 versions - Latest release: almost 4 years ago - 27 downloads last month - 2 maintainers
Top 4.6% on pypi.org
fmriprep 23.2.2
A robust and easy-to-use pipeline for preprocessing of diverse fMRI data
181 versions - Latest release: 4 days ago - 11 dependent repositories - 4.3 thousand downloads last month - 607 stars on GitHub - 5 maintainers
Top 5.3% on pypi.org
fmriprep-docker 23.2.2
A wrapper for generating Docker commands using regular fMRIPrep syntax
167 versions - Latest release: 4 days ago - 1 dependent package - 9 dependent repositories - 1.7 thousand downloads last month - 607 stars on GitHub - 5 maintainers
fmripreprocessing 0.1.0
1 version - Latest release: 4 months ago - 4 downloads last month - 1 maintainer
fmristats 0.1.1
Modelling the data and not the images in FMRI
8 versions - Latest release: about 5 years ago - 1 dependent repositories - 92 downloads last month - 2 maintainers
frat-brain 1.6.5
Application for ROI fMRI data analysis.
37 versions - Latest release: 8 days ago - 171 downloads last month - 11 stars on GitHub - 1 maintainer
freesurfer-stats 1.2.1
Python Library to Read FreeSurfer's cortical parcellation anatomical statistics
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 192 downloads last month - 12 stars on GitHub - 2 maintainers
freesurfer-surface 2.0.0
Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format
10 versions - Latest release: almost 3 years ago - 3 dependent repositories - 122 downloads last month - 8 stars on GitHub - 2 maintainers
freesurfer-volume-reader 2.1.1
Python script & library to read hippocampal subfield volumescomputed by Freesurfer & ASHS
8 versions - Latest release: almost 3 years ago - 1 dependent repositories - 85 downloads last month - 4 stars on GitHub - 2 maintainers
Top 5.3% on pypi.org
fsleyes 1.12.0
FSLeyes, the FSL image viewer
114 versions - Latest release: 2 days ago - 1 dependent package - 4 dependent repositories - 1.22 thousand downloads last month - 806 stars on GitHub - 2 maintainers
fslfeatsetup 0.4.8 removed
a small set of tools for create FSL FEAT .fsf configuration files
15 versions - Latest release: almost 3 years ago - 1 dependent repositories - 130 downloads last month - 1 stars on GitHub - 2 maintainers
Top 2.5% on pypi.org
fslpy 3.18.2
FSL Python library
115 versions - Latest release: about 1 month ago - 9 dependent packages - 18 dependent repositories - 4.1 thousand downloads last month - 805 stars on GitHub - 2 maintainers
fsl-sub 2.8.3
FSL Cluster Submission Script
3 versions - Latest release: about 1 year ago - 3 dependent packages - 74 downloads last month - 2 maintainers
fsl-sub-plugin-sge 1.5.5
FSL Cluster Submission Plugin for Son of/Univa Grid Engine
2 versions - Latest release: 2 months ago - 43 downloads last month - 2 maintainers
fsl-sub-plugin-slurm 1.6.2
FSL Cluster Submission Plugin for Slurm
4 versions - Latest release: 3 months ago - 59 downloads last month - 2 maintainers
gema-utils 0.0.1
A python suite to complement CLARA (NVIDIA's healthcare application)
1 version - Latest release: about 4 years ago - 1 dependent repositories - 17 downloads last month - 2 maintainers
gradec 0.0.1rc5
Meta-analytic gradient decoding
3 versions - Latest release: about 2 months ago - 31 downloads last month - 0 stars on GitHub - 1 maintainer
gradiator 0.0.1.dev14
turn covariance matrices into brain gradients
1 version - Latest release: over 1 year ago - 14 downloads last month - 2 stars on GitHub - 1 maintainer
graynet 0.5.6
Individualized single-subject networks from T1 mri features such as cortical thickness and gray m...
21 versions - Latest release: about 1 year ago - 1 dependent repositories - 164 downloads last month - 34 stars on GitHub - 1 maintainer
hedtools 0.4.0
HED validation, summary, and analysis tools.
5 versions - Latest release: 7 months ago - 3 dependent repositories - 2.41 thousand downloads last month - 8 stars on GitHub - 3 maintainers
hiwenet 0.4.5
Histogram-weighted Networks for Feature Extraction and Advance Analysis in Neuroscience
7 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 326 downloads last month - 9 stars on GitHub - 1 maintainer
hmp 0.3.2
Package for fitting Hidden Multivariate pattern model to time-series
3 versions - Latest release: 3 months ago - 66 downloads last month - 30 stars on GitHub - 2 maintainers
hyperalignment 0.1.1
Hyperalignment algorithms for functional alignment of fMRI data.
1 version - Latest release: 12 months ago - 69 downloads last month - 2 maintainers
hypercoil 0.1.0.dev1
Differentiable programming for neuroimaging analysis
1 version - Latest release: 9 months ago - 2 dependent packages - 1 dependent repositories - 6 downloads last month - 4 stars on GitHub - 2 maintainers
imaging-transcriptomics 1.1.11
A package to perform imaging transcriptomics analysis on a neuroimaging brain scan.
16 versions - Latest release: over 1 year ago - 1 dependent repositories - 118 downloads last month - 14 stars on GitHub - 1 maintainer
Related Keywords
neuroscience 74 python 66 fmri 37 mri 37 brain 36 bids 27 nifti 20 machine-learning 19 brain-imaging 16 eeg 15 statistics 12 fsl 12 meg 11 dicom 11 freesurfer 10 MRI 10 mri-images 9 machine learning 9 pydra 9 electroencephalography 9 EEG 9 medical-imaging 9 MEG 9 surface 8 nii 7 bids-format 7 python3 7 dcm2niix 7 research 7 magnetoencephalography 7 deep-learning 7 visualization 7 meta-analysis 6 cortex 6 nilearn 6 quality-control 6 dcm 6 hacktoberfest 6 fMRI 5 BIDS 5 pet 5 nitrc 5 mricrogl 5 dicom-images 5 gz 5 jpeg-image 5 nifti-format 5 electrocorticography 5 dti 5 registration 5 deep learning 5 jpeg 5 image-processing 5 brainweb 5 Neuroimaging 4 scikit-learn 4 pytorch 4 ants 4 workflows 4 segmentation 4 analysis 4 cli 4 tool 4 preprocessing 4 imaging 4 nipype 4 d2b 4 plugin 4 fmri-preprocessing 4 neuroinformatics 4 nibabel 4 cluster 3 grid 3 slurm 3 anatomical-mri 3 feature-extraction 3 brain-extraction 3 tractography 3 diffusion-mri 3 FSL 3 django 3 deeplearning 3 research-data-management 3 science 3 learning 3 brain-networks 3 vertex 3 mesh 3 parcellation 3 reader 3 combat 3 brain-connectivity 3 spm 3 fmri-data-analysis 3 skull-stripping 3 data-standards 3 nipy 3 data 3 afni 3 voxel 3