Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "neuroimaging" keyword

Top 7.8% on pypi.org
mriqc 24.0.0
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and ...
114 versions - Latest release: 23 days ago - 2 dependent repositories - 1.22 thousand downloads last month - 280 stars on GitHub - 10 maintainers
Top 9.3% on pypi.org
brainiak 0.9.1
Brain Imaging Analysis Kit
14 versions - Latest release: over 4 years ago - 5 dependent repositories - 130 downloads last month - 322 stars on GitHub - 8 maintainers
Top 2.7% on pypi.org
pydra 0.16.2
Pydra dataflow engine
37 versions - Latest release: almost 3 years ago - 16 dependent packages - 16 dependent repositories - 2.47 thousand downloads last month - 118 stars on GitHub - 7 maintainers
photonai-neuro 0.2.0
Add-on module to simplify machine learning analyses for multimodal Magnetic Resonance Imaging (MR...
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 25 downloads last month - 7 stars on GitHub - 6 maintainers
mne-lsl 1.3.1
Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compa...
6 versions - Latest release: about 1 month ago - 1 dependent package - 1.3 thousand downloads last month - 47 stars on GitHub - 6 maintainers
clinica-pydra-freesurfer 0.1.0
Pydra tasks for FreeSurfer designed for Clinica
1 version - Latest release: 10 days ago - 157 downloads last month - 5 stars on GitHub - 6 maintainers
Top 7.2% on pypi.org
nobrainer 1.2.1
A framework for developing neural network models for 3D image processing.
18 versions - Latest release: about 1 month ago - 1 dependent package - 4 dependent repositories - 185 downloads last month - 138 stars on GitHub - 6 maintainers
Top 3.7% on pypi.org
tedana 24.0.1
TE-Dependent Analysis (tedana) of multi-echo functional magnetic resonance imaging (fMRI) data.
23 versions - Latest release: about 6 hours ago - 2 dependent packages - 13 dependent repositories - 4.19 thousand downloads last month - 157 stars on GitHub - 6 maintainers
Top 9.7% on pypi.org
datalad-neuroimaging 0.3.5
DataLad extension package for neuro/medical imaging
22 versions - Latest release: about 2 months ago - 2 dependent repositories - 696 downloads last month - 17 stars on GitHub - 6 maintainers
Top 4.6% on pypi.org
fmriprep 23.2.2
A robust and easy-to-use pipeline for preprocessing of diverse fMRI data
181 versions - Latest release: 4 days ago - 11 dependent repositories - 4.3 thousand downloads last month - 607 stars on GitHub - 5 maintainers
Top 9.9% on pypi.org
neuromaps 0.0.5
A toolbox for projecting, resampling, and comparing brain maps
5 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 307 downloads last month - 208 stars on GitHub - 5 maintainers
Top 5.3% on pypi.org
fmriprep-docker 23.2.2
A wrapper for generating Docker commands using regular fMRIPrep syntax
167 versions - Latest release: 4 days ago - 1 dependent package - 9 dependent repositories - 1.7 thousand downloads last month - 607 stars on GitHub - 5 maintainers
Top 6.6% on pypi.org
netneurotools 0.2.4
A toolbox for network neuroscience
6 versions - Latest release: 3 months ago - 5 dependent packages - 10 dependent repositories - 624 downloads last month - 55 stars on GitHub - 5 maintainers
clinica-pydra-fsl 0.1.0
Pydra tasks for FSL designed for Clinica
1 version - Latest release: 10 days ago - 156 downloads last month - 3 stars on GitHub - 5 maintainers
nisnap 0.4.1
nisnap
17 versions - Latest release: 10 months ago - 1 dependent package - 1 dependent repositories - 98 downloads last month - 8 stars on GitHub - 4 maintainers
Top 1.4% on pypi.org
dipy 1.9.0
Diffusion MRI Imaging in Python
27 versions - Latest release: 2 months ago - 38 dependent packages - 204 dependent repositories - 31.8 thousand downloads last month - 651 stars on GitHub - 4 maintainers
tfce-mediation 1.5.3
TFCE_mediation
37 versions - Latest release: over 5 years ago - 1 dependent repositories - 75 downloads last month - 29 stars on GitHub - 4 maintainers
Top 0.7% on pypi.org
nipype 1.8.6
Neuroimaging in Python: Pipelines and Interfaces
64 versions - Latest release: about 1 year ago - 43 dependent packages - 1,107 dependent repositories - 147 thousand downloads last month - 733 stars on GitHub - 4 maintainers
Top 6.7% on pypi.org
bidsschematools 0.8.0
Python tools for working with the BIDS schema.
9 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 26 thousand downloads last month - 252 stars on GitHub - 4 maintainers
deepneuro 0.2.3
DeepNeuro: A deep learning python package for neuroimaging data.
6 versions - Latest release: almost 5 years ago - 1 dependent repositories - 26 downloads last month - 121 stars on GitHub - 4 maintainers
mne-nirs 0.6.0
An MNE compatible package for processing near-infrared spectroscopy data.
16 versions - Latest release: 6 months ago - 1 dependent repositories - 381 downloads last month - 72 stars on GitHub - 4 maintainers
deepsurfer 0.1.1a4
Learning-Based Utilities for Neuroimage Analysis
6 versions - Latest release: 2 months ago - 381 downloads last month - 4 maintainers
neuropower 0.2.8
A package to perform power analyses for neuroimaging data
9 versions - Latest release: over 7 years ago - 3 dependent repositories - 41 downloads last month - 12 stars on GitHub - 4 maintainers
Top 6.8% on pypi.org
dcm2bids 3.1.1
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
24 versions - Latest release: 7 months ago - 7 dependent repositories - 1 thousand downloads last month - 147 stars on GitHub - 4 maintainers
Top 8.7% on pypi.org
pyprep 0.4.3
A Python implementation of the preprocessing pipeline (PREP) for EEG data.
11 versions - Latest release: 7 months ago - 4 dependent repositories - 1.88 thousand downloads last month - 117 stars on GitHub - 4 maintainers
Top 7.0% on pypi.org
pynv 0.1.1
A Python library for interfacing with http://neurovault.org upload API
4 versions - Latest release: almost 7 years ago - 1 dependent package - 9 dependent repositories - 2.46 thousand downloads last month - 18 stars on GitHub - 4 maintainers
react-fmri 0.1.7
A Python package that implements REACT: Receptor-Enriched Analysis of Functional Connectivity by ...
10 versions - Latest release: almost 2 years ago - 1 dependent repositories - 67 downloads last month - 11 stars on GitHub - 4 maintainers
dmipy 1.0.5
dmipy: diffusion microstructure imaging in python
4 versions - Latest release: over 3 years ago - 3 dependent repositories - 78 downloads last month - 92 stars on GitHub - 4 maintainers
pydra-ants 0.0.5
Pydra tasks for ANTs
5 versions - Latest release: 9 months ago - 25 downloads last month - 0 stars on GitHub - 4 maintainers
Top 9.3% on pypi.org
clinica 0.8.1
Software platform for clinical neuroimaging studies
38 versions - Latest release: 15 days ago - 1 dependent package - 1 dependent repositories - 515 downloads last month - 213 stars on GitHub - 4 maintainers
Top 7.1% on pypi.org
pydra-dcm2niix 1.2.1
Provides a task interface for the popular dcm2niix DICOM to NIfTI converter
6 versions - Latest release: 10 months ago - 3 dependent packages - 2 dependent repositories - 770 downloads last month - 805 stars on GitHub - 4 maintainers
clinicadl 1.6.1
Framework for the reproducible processing of neuroimaging data with deep learning methods
33 versions - Latest release: about 1 month ago - 1 dependent repositories - 368 downloads last month - 152 stars on GitHub - 4 maintainers
cubids 1.1.0
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
10 versions - Latest release: 28 days ago - 23 downloads last month - 18 stars on GitHub - 4 maintainers
Top 4.6% on pypi.org
nltools 0.5.1
A Python package to analyze neuroimaging data
41 versions - Latest release: about 1 month ago - 2 dependent packages - 13 dependent repositories - 2.4 thousand downloads last month - 120 stars on GitHub - 4 maintainers
Top 8.1% on pypi.org
brainstat 0.4.2
A toolbox for statistical analysis of neuroimaging data
17 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 558 downloads last month - 61 stars on GitHub - 4 maintainers
roicat 1.1.38
A library for classifying and tracking ROIs.
37 versions - Latest release: 27 days ago - 2 dependent repositories - 378 downloads last month - 9 stars on GitHub - 4 maintainers
Top 6.3% on pypi.org
templateflow 24.2.0
TemplateFlow Python Client - TemplateFlow is the Zone of neuroimaging templates.
47 versions - Latest release: about 2 months ago - 16 dependent packages - 31 dependent repositories - 24.3 thousand downloads last month - 70 stars on GitHub - 4 maintainers
pipetography 0.3.12
Pre/Post-processing pipeline for tractography wrapped around nipype and mrtrix3
19 versions - Latest release: over 2 years ago - 1 dependent repositories - 149 downloads last month - 4 stars on GitHub - 4 maintainers
itk-skullstripping 0.1.0
Automatic skull-stripping for neuroimage analysis
2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 153 downloads last month - 11 stars on GitHub - 4 maintainers
pycrostates 0.5.0
A simple open source Python package for EEG microstate segmentation.
8 versions - Latest release: 3 months ago - 139 downloads last month - 33 stars on GitHub - 4 maintainers
Top 2.7% on pypi.org
bids-validator 1.14.5
Validator for the Brain Imaging Data Structure
82 versions - Latest release: about 1 month ago - 4 dependent packages - 87 dependent repositories - 33.9 thousand downloads last month - 176 stars on GitHub - 4 maintainers
Top 4.9% on pypi.org
nimare 0.2.2
NiMARE: Neuroimaging Meta-Analysis Research Environment
42 versions - Latest release: 3 months ago - 5 dependent packages - 11 dependent repositories - 1.07 thousand downloads last month - 172 stars on GitHub - 4 maintainers
p3proc 0.1.2
The p3 fmri processing pipeline
2 versions - Latest release: over 5 years ago - 1 dependent repositories - 29 downloads last month - 0 stars on GitHub - 4 maintainers
pydfc 1.0.4
This package aims to provide a comprehensive framework for assessing dynamic functional connectiv...
1 version - Latest release: about 2 months ago - 127 downloads last month - 4 maintainers
Top 6.9% on pypi.org
openmeeg 2.5.8
Forward problems solver in the field of EEG and MEG.
10 versions - Latest release: about 1 month ago - 8 dependent repositories - 2.27 thousand downloads last month - 70 stars on GitHub - 4 maintainers
bioexplorer 1.7.1
Python API for the Blue Brain BioExplorer
12 versions - Latest release: 5 months ago - 2 dependent repositories - 53 downloads last month - 62 stars on GitHub - 4 maintainers
hedtools 0.4.0
HED validation, summary, and analysis tools.
5 versions - Latest release: 7 months ago - 3 dependent repositories - 2.41 thousand downloads last month - 8 stars on GitHub - 3 maintainers
Top 2.3% on pypi.org
pybids 0.16.4
bids: interface with datasets conforming to BIDS
48 versions - Latest release: 5 months ago - 40 dependent packages - 163 dependent repositories - 29.4 thousand downloads last month - 211 stars on GitHub - 3 maintainers
pydra-freesurfer 0.0.11
Pydra tasks for FreeSurfer
11 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 445 downloads last month - 5 stars on GitHub - 3 maintainers
Top 1.0% on pypi.org
mne 1.7.0
MNE-Python project for MEG and EEG data analysis.
77 versions - Latest release: 21 days ago - 124 dependent packages - 646 dependent repositories - 116 thousand downloads last month - 2,511 stars on GitHub - 3 maintainers
nibabies 23.1.0
Processing workflows for magnetic resonance images of the brain in infants
25 versions - Latest release: 6 months ago - 1 dependent repositories - 224 downloads last month - 19 stars on GitHub - 3 maintainers
Top 3.4% on pypi.org
mne-bids 0.11.1
MNE-BIDS: Organizing MEG, EEG, and iEEG data according to the BIDS specification and facilitating...
16 versions - Latest release: over 1 year ago - 9 dependent packages - 50 dependent repositories - 17 thousand downloads last month - 120 stars on GitHub - 3 maintainers
actflow 0.3.4
The Brain Activity Flow (Actflow) Toolbox. Tools to quantify the relationship between connectivit...
7 versions - Latest release: 5 months ago - 1 dependent repositories - 70 downloads last month - 33 stars on GitHub - 3 maintainers
pydra-fsl 0.0.22
Pydra tasks for FSL
22 versions - Latest release: 8 months ago - 1 dependent package - 448 downloads last month - 3 stars on GitHub - 3 maintainers
Top 3.9% on pypi.org
braindecode 0.8.1
Deep learning software to decode EEG, ECG or MEG signals
52 versions - Latest release: 6 months ago - 2 dependent packages - 15 dependent repositories - 3.55 thousand downloads last month - 687 stars on GitHub - 3 maintainers
pydra-bids 0.0.10
Pydra tasks for BIDS I/O
10 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 260 downloads last month - 2 stars on GitHub - 3 maintainers
hyperalignment 0.1.1
Hyperalignment algorithms for functional alignment of fMRI data.
1 version - Latest release: 12 months ago - 69 downloads last month - 2 maintainers
bjdata 0.4.1
Binary JData and UBJSON encoder/decoder
11 versions - Latest release: 7 months ago - 1 dependent repositories - 113 downloads last month - 1 stars on GitHub - 2 maintainers
Top 4.4% on pypi.org
dcm2niix 1.0.20220715
DCM2NIIX Python package
2 versions - Latest release: almost 2 years ago - 8 dependent packages - 3 dependent repositories - 4.48 thousand downloads last month - 805 stars on GitHub - 2 maintainers
django-mri 0.0.4
A reusable Django app to manage MRI data.
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 48 downloads last month - 7 stars on GitHub - 2 maintainers
nqdc 0.0.3
Download neuroimaging articles and extract text and stereotactic coordinates.
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 39 downloads last month - 0 stars on GitHub - 2 maintainers
surface-spaces 0.1.0
Convenient conversion between surface spaces.
1 version - Latest release: almost 2 years ago - 14 downloads last month - 0 stars on GitHub - 2 maintainers
neurocaps 0.8.8
Co-activation patterns Python package
8 versions - Latest release: about 2 months ago - 189 downloads last month - 0 stars on GitHub - 2 maintainers
nitrain 0.3.0
Cloud-based framework for training and sharing medical imaging AI models
4 versions - Latest release: 16 days ago - 240 downloads last month - 1,844 stars on GitHub - 2 maintainers
Top 0.5% on pypi.org
nibabel 5.2.1
Access a multitude of neuroimaging data formats
42 versions - Latest release: 2 months ago - 284 dependent packages - 3,394 dependent repositories - 485 thousand downloads last month - 604 stars on GitHub - 2 maintainers
vqt 0.1.3
Variable Q-Transform with PyTorch backend
4 versions - Latest release: about 1 month ago - 73 downloads last month - 0 stars on GitHub - 2 maintainers
nobrainer-zoo 0.2.0
A framework for inference and re-training of pretrained neuroimaging models
1 version - Latest release: over 1 year ago - 6 downloads last month - 8 stars on GitHub - 2 maintainers
Top 10.0% on pypi.org
snakebids 0.13.0
BIDS integration into snakemake workflows
40 versions - Latest release: 10 days ago - 2 dependent packages - 14 dependent repositories - 2.38 thousand downloads last month - 15 stars on GitHub - 2 maintainers
neurograph 3.0.0
12 versions - Latest release: 2 months ago - 139 downloads last month - 2 maintainers
clinica-pydra-ants 0.1.1
Pydra tasks for ANTs designed for Clinica
2 versions - Latest release: 14 days ago - 210 downloads last month - 0 stars on GitHub - 2 maintainers
brainsimulator 0.5.4
Nuclear brain imaging synthesis with python
4 versions - Latest release: over 6 years ago - 14 downloads last month - 0 stars on GitHub - 2 maintainers
fsl-sub 2.8.3
FSL Cluster Submission Script
3 versions - Latest release: about 1 year ago - 3 dependent packages - 74 downloads last month - 2 maintainers
neurodatapub 0.4
NeuroDataPub: Tool built for publication of BIDS datasets of the NCCR-Synapsy
4 versions - Latest release: over 2 years ago - 1 dependent repositories - 28 downloads last month - 2 stars on GitHub - 2 maintainers
qipype 3.2
nipype interfaces to QUantitative Imaging Tools
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 12 downloads last month - 55 stars on GitHub - 2 maintainers
bcblib 0.3.4
32 versions - Latest release: about 1 year ago - 1 dependent repositories - 154 downloads last month - 2 stars on GitHub - 2 maintainers
pilab-binama 0.0.8
Functions to modify binary masks
8 versions - Latest release: about 1 year ago - 42 downloads last month - 1 stars on GitHub - 2 maintainers
fmri_delay 0.1.4
Tool for measuring delay between sparse transitions in fmri BOLD signals
6 versions - Latest release: almost 4 years ago - 27 downloads last month - 2 maintainers
neural-fmri 1.2.5
Neuroimaging Analysis Library
31 versions - Latest release: over 7 years ago - 3 dependent repositories - 77 downloads last month - 2 stars on GitHub - 2 maintainers
brainlit 0.3.6
Code to process and analyze brainlit data
11 versions - Latest release: 12 months ago - 1 dependent repositories - 157 downloads last month - 24 stars on GitHub - 2 maintainers
d2b-nth-of-type 1.0.1
Plugin for the d2b package to deterministically uniquify different acquisition runs
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 2 maintainers
psychopykit 2023.8.17 💰
Psychopy output conversion utilities
3 versions - Latest release: 9 months ago - 29 downloads last month - 2 maintainers
d2b-sidecarless-nii 1.0.0
Plugin for the d2b package to handle NIfTI images without sidecars
1 version - Latest release: over 2 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 2 maintainers
nibetaseries 0.6.0
BetaSeries Correlations implemented in Nipype
20 versions - Latest release: about 4 years ago - 1 dependent repositories - 80 downloads last month - 29 stars on GitHub - 2 maintainers
quickshear 1.2.0
Quickshear Defacing for Neuroimages
3 versions - Latest release: 12 months ago - 1 dependent repositories - 39 downloads last month - 11 stars on GitHub - 2 maintainers
phys2cvr 0.18.3
Python library to generate regressors for and compute Cerebrovascular Reactivity and lag maps.
44 versions - Latest release: 8 months ago - 1 dependent repositories - 305 downloads last month - 4 stars on GitHub - 2 maintainers
niatlas 0.0.1
atlas classes and methods for neuroimaging
1 version - Latest release: almost 5 years ago - 1 dependent repositories - 17 downloads last month - 2 stars on GitHub - 2 maintainers
dwiprep 0.1.5
DWIprep is a robust and easy-to-use preprocessing pipeline for diffusion-weighted imaging of vari...
1 version - Latest release: almost 3 years ago - 2 dependent repositories - 9 downloads last month - 1 stars on GitHub - 2 maintainers
mapbrain 0.9.3
Brain image feature extraction and visualization
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 2 maintainers
brainview 0.0.1 💰
Visualize morphometry neuroimaging data on 3D brain meshes.
1 version - Latest release: over 5 years ago - 1 dependent repositories - 21 downloads last month - 4 stars on GitHub - 2 maintainers
pvandyken-deprecated 0.0.4
Wrapper to manage deprecations
4 versions - Latest release: 8 months ago - 1 dependent package - 1 dependent repositories - 3.09 thousand downloads last month - 15 stars on GitHub - 2 maintainers
convert-source 0.1.1
Converts and organises source MR image data-sets in accordance with the Brain Imaging Data Struct...
15 versions - Latest release: about 3 years ago - 1 dependent repositories - 15 downloads last month - 1 stars on GitHub - 2 maintainers
pystorm3 0.1.8
Python implementation of some Brainstorm functions
9 versions - Latest release: 3 days ago - 658 downloads last month - 1 stars on GitHub - 2 maintainers
brainweb 1.6.2 💰
BrainWeb-based multimodal models of 20 normal brains
18 versions - Latest release: over 3 years ago - 1 dependent package - 3 dependent repositories - 245 downloads last month - 27 stars on GitHub - 2 maintainers
d2b 1.4.2
Organize data in the BIDS format
21 versions - Latest release: over 1 year ago - 6 dependent repositories - 215 downloads last month - 0 stars on GitHub - 2 maintainers
niphlem 0.0.3
Physiological Log Extraction for Modelling in Neuroimaging
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 17 downloads last month - 3 stars on GitHub - 2 maintainers
nii2png 0.3.0 💰
A lightweight neuroimaging .nii to .png converter
2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 135 downloads last month - 109 stars on GitHub - 2 maintainers
mne-ari 0.1.2
All-Resolutions Inference for M/EEG
2 versions - Latest release: over 1 year ago - 1 dependent repositories - 16 downloads last month - 15 stars on GitHub - 2 maintainers
nipype-generate-fieldmaps 0.2.4 💰
Nipype workflow to generate fieldmaps from EPI acquisitions with differing phase-encoding directions
6 versions - Latest release: over 2 years ago - 1 dependent repositories - 5 downloads last month - 1 stars on GitHub - 2 maintainers
bids2table 0.1.0
Efficiently index large-scale BIDS datasets and derivatives
3 versions - Latest release: 9 days ago - 1 dependent repositories - 410 downloads last month - 11 stars on GitHub - 2 maintainers
bimodneurocnn 0.1.0
Tools for bimodal training of CNNs, i.e. concurrent training with two data types
1 version - Latest release: over 3 years ago - 11 downloads last month - 687 stars on GitHub - 2 maintainers
Related Keywords
neuroscience 74 python 66 mri 37 fmri 37 brain 36 bids 27 nifti 20 machine-learning 19 brain-imaging 16 eeg 15 statistics 12 fsl 12 meg 11 dicom 11 MRI 10 freesurfer 10 medical-imaging 9 machine learning 9 EEG 9 electroencephalography 9 mri-images 9 pydra 9 MEG 9 surface 8 visualization 7 dcm2niix 7 research 7 bids-format 7 deep-learning 7 nii 7 python3 7 magnetoencephalography 7 dcm 6 hacktoberfest 6 quality-control 6 meta-analysis 6 cortex 6 nilearn 6 BIDS 5 dti 5 pet 5 registration 5 deep learning 5 electrocorticography 5 nifti-format 5 image-processing 5 mricrogl 5 fMRI 5 brainweb 5 nitrc 5 jpeg-image 5 dicom-images 5 gz 5 jpeg 5 segmentation 4 d2b 4 plugin 4 tool 4 cli 4 Neuroimaging 4 pytorch 4 nibabel 4 nipype 4 analysis 4 ants 4 preprocessing 4 neuroinformatics 4 scikit-learn 4 imaging 4 fmri-preprocessing 4 workflows 4 brain-connectivity 3 reader 3 ecog 3 research-data-management 3 slurm 3 science 3 grid 3 cluster 3 ECoG 3 repository 3 tractography 3 fmri-data-analysis 3 FSL 3 voxel 3 mesh 3 vertex 3 data 3 afni 3 DICOM 3 data-standards 3 django 3 learning 3 feature-extraction 3 diffusion-mri 3 skull-stripping 3 brain-extraction 3 mri-brain 3 normalization 3 harmonization 3