Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "neuroimaging" keyword

Top 4.6% on pypi.org
fmriprep 23.2.2
A robust and easy-to-use pipeline for preprocessing of diverse fMRI data
181 versions - Latest release: 4 days ago - 11 dependent repositories - 4.3 thousand downloads last month - 607 stars on GitHub - 5 maintainers
Top 5.3% on pypi.org
fmriprep-docker 23.2.2
A wrapper for generating Docker commands using regular fMRIPrep syntax
167 versions - Latest release: 4 days ago - 1 dependent package - 9 dependent repositories - 1.7 thousand downloads last month - 607 stars on GitHub - 5 maintainers
junifer 0.0.4
JUelich NeuroImaging FEature extractoR
161 versions - Latest release: about 1 month ago - 1.67 thousand downloads last month - 11 stars on GitHub - 1 maintainer
Top 2.5% on pypi.org
fslpy 3.18.2
FSL Python library
115 versions - Latest release: about 1 month ago - 9 dependent packages - 18 dependent repositories - 4.1 thousand downloads last month - 805 stars on GitHub - 2 maintainers
Top 5.3% on pypi.org
fsleyes 1.12.0
FSLeyes, the FSL image viewer
114 versions - Latest release: 2 days ago - 1 dependent package - 4 dependent repositories - 1.22 thousand downloads last month - 806 stars on GitHub - 2 maintainers
Top 7.8% on pypi.org
mriqc 24.0.0
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and ...
114 versions - Latest release: 23 days ago - 2 dependent repositories - 1.22 thousand downloads last month - 280 stars on GitHub - 10 maintainers
Top 2.7% on pypi.org
bids-validator 1.14.5
Validator for the Brain Imaging Data Structure
82 versions - Latest release: about 1 month ago - 4 dependent packages - 87 dependent repositories - 33.9 thousand downloads last month - 176 stars on GitHub - 4 maintainers
Top 1.0% on pypi.org
mne 1.7.0
MNE-Python project for MEG and EEG data analysis.
77 versions - Latest release: 21 days ago - 124 dependent packages - 646 dependent repositories - 116 thousand downloads last month - 2,511 stars on GitHub - 3 maintainers
Top 0.7% on pypi.org
nipype 1.8.6
Neuroimaging in Python: Pipelines and Interfaces
64 versions - Latest release: about 1 year ago - 43 dependent packages - 1,107 dependent repositories - 147 thousand downloads last month - 733 stars on GitHub - 4 maintainers
Top 3.9% on pypi.org
braindecode 0.8.1
Deep learning software to decode EEG, ECG or MEG signals
52 versions - Latest release: 6 months ago - 2 dependent packages - 15 dependent repositories - 3.55 thousand downloads last month - 687 stars on GitHub - 3 maintainers
Top 2.3% on pypi.org
pybids 0.16.4
bids: interface with datasets conforming to BIDS
48 versions - Latest release: 5 months ago - 40 dependent packages - 163 dependent repositories - 29.4 thousand downloads last month - 211 stars on GitHub - 3 maintainers
Top 6.3% on pypi.org
templateflow 24.2.0
TemplateFlow Python Client - TemplateFlow is the Zone of neuroimaging templates.
47 versions - Latest release: about 2 months ago - 16 dependent packages - 31 dependent repositories - 24.3 thousand downloads last month - 70 stars on GitHub - 4 maintainers
phys2cvr 0.18.3
Python library to generate regressors for and compute Cerebrovascular Reactivity and lag maps.
44 versions - Latest release: 8 months ago - 1 dependent repositories - 305 downloads last month - 4 stars on GitHub - 2 maintainers
airflow-imaging-plugins 2.4.3
Airflow plugins to support Neuroimaging tasks.
43 versions - Latest release: over 6 years ago - 1 dependent repositories - 151 downloads last month - 15 stars on GitHub - 2 maintainers
Top 0.5% on pypi.org
nibabel 5.2.1
Access a multitude of neuroimaging data formats
42 versions - Latest release: 2 months ago - 284 dependent packages - 3,394 dependent repositories - 485 thousand downloads last month - 604 stars on GitHub - 2 maintainers
Top 4.9% on pypi.org
nimare 0.2.2
NiMARE: Neuroimaging Meta-Analysis Research Environment
42 versions - Latest release: 3 months ago - 5 dependent packages - 11 dependent repositories - 1.07 thousand downloads last month - 172 stars on GitHub - 4 maintainers
Top 4.6% on pypi.org
nltools 0.5.1
A Python package to analyze neuroimaging data
41 versions - Latest release: about 1 month ago - 2 dependent packages - 13 dependent repositories - 2.4 thousand downloads last month - 120 stars on GitHub - 4 maintainers
Top 10.0% on pypi.org
snakebids 0.13.0
BIDS integration into snakemake workflows
40 versions - Latest release: 10 days ago - 2 dependent packages - 14 dependent repositories - 2.38 thousand downloads last month - 15 stars on GitHub - 2 maintainers
Top 9.3% on pypi.org
clinica 0.8.1
Software platform for clinical neuroimaging studies
38 versions - Latest release: 15 days ago - 1 dependent package - 1 dependent repositories - 515 downloads last month - 213 stars on GitHub - 4 maintainers
tfce-mediation 1.5.3
TFCE_mediation
37 versions - Latest release: over 5 years ago - 1 dependent repositories - 75 downloads last month - 29 stars on GitHub - 4 maintainers
frat-brain 1.6.5
Application for ROI fMRI data analysis.
37 versions - Latest release: 8 days ago - 171 downloads last month - 11 stars on GitHub - 1 maintainer
roicat 1.1.38
A library for classifying and tracking ROIs.
37 versions - Latest release: 28 days ago - 2 dependent repositories - 378 downloads last month - 9 stars on GitHub - 4 maintainers
Top 2.7% on pypi.org
pydra 0.16.2
Pydra dataflow engine
37 versions - Latest release: almost 3 years ago - 16 dependent packages - 16 dependent repositories - 2.47 thousand downloads last month - 118 stars on GitHub - 7 maintainers
Top 8.7% on pypi.org
bidscoin 4.3.2
Converts and organises raw MRI data-sets according to the Brain Imaging Data Structure (BIDS)
34 versions - Latest release: about 1 month ago - 2 dependent repositories - 484 downloads last month - 117 stars on GitHub - 1 maintainer
clinicadl 1.6.1
Framework for the reproducible processing of neuroimaging data with deep learning methods
33 versions - Latest release: about 1 month ago - 1 dependent repositories - 368 downloads last month - 152 stars on GitHub - 4 maintainers
nigsp 0.19.0
A python library (and toolbox!) to run Graph Signal Processing on multimodal MRI data.
32 versions - Latest release: 15 days ago - 1 dependent repositories - 372 downloads last month - 16 stars on GitHub - 1 maintainer
bcblib 0.3.4
32 versions - Latest release: about 1 year ago - 1 dependent repositories - 154 downloads last month - 2 stars on GitHub - 2 maintainers
neural-fmri 1.2.5
Neuroimaging Analysis Library
31 versions - Latest release: over 7 years ago - 3 dependent repositories - 77 downloads last month - 2 stars on GitHub - 2 maintainers
visualqc 0.6.6
Assistive tool for the quality control of neuroimaging data
30 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 272 downloads last month - 72 stars on GitHub - 2 maintainers
bidskit 2024.5.3 💰
BIDS curation toolkit
29 versions - Latest release: 7 days ago - 1 dependent repositories - 302 downloads last month - 59 stars on GitHub - 1 maintainer
Top 1.4% on pypi.org
dipy 1.9.0
Diffusion MRI Imaging in Python
27 versions - Latest release: 2 months ago - 38 dependent packages - 204 dependent repositories - 31.8 thousand downloads last month - 651 stars on GitHub - 4 maintainers
nibabies-wrapper 99.99.99
A wrapper for generating Docker and Apptainer/Singularity commands for simpler NiBabies usage
26 versions - Latest release: over 2 years ago - 1 dependent repositories - 175 downloads last month - 19 stars on GitHub - 2 maintainers
nibabies 23.1.0
Processing workflows for magnetic resonance images of the brain in infants
25 versions - Latest release: 6 months ago - 1 dependent repositories - 224 downloads last month - 19 stars on GitHub - 3 maintainers
tmi_viewer 0.4.3
tmi_viewer
24 versions - Latest release: about 6 years ago - 84 downloads last month - 29 stars on GitHub - 2 maintainers
Top 6.8% on pypi.org
dcm2bids 3.1.1
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
24 versions - Latest release: 7 months ago - 7 dependent repositories - 1 thousand downloads last month - 147 stars on GitHub - 4 maintainers
Top 3.7% on pypi.org
tedana 24.0.1
TE-Dependent Analysis (tedana) of multi-echo functional magnetic resonance imaging (fMRI) data.
23 versions - Latest release: about 11 hours ago - 2 dependent packages - 13 dependent repositories - 4.19 thousand downloads last month - 157 stars on GitHub - 6 maintainers
Top 9.7% on pypi.org
datalad-neuroimaging 0.3.5
DataLad extension package for neuro/medical imaging
22 versions - Latest release: about 2 months ago - 2 dependent repositories - 696 downloads last month - 17 stars on GitHub - 6 maintainers
pycivet 0.1.2
Object-oriented CIVET bindings for Python
22 versions - Latest release: over 1 year ago - 1 dependent repositories - 187 downloads last month - 0 stars on GitHub - 2 maintainers
pydra-fsl 0.0.22
Pydra tasks for FSL
22 versions - Latest release: 8 months ago - 1 dependent package - 448 downloads last month - 3 stars on GitHub - 3 maintainers
graynet 0.5.6
Individualized single-subject networks from T1 mri features such as cortical thickness and gray m...
21 versions - Latest release: about 1 year ago - 1 dependent repositories - 164 downloads last month - 34 stars on GitHub - 1 maintainer
d2b 1.4.2
Organize data in the BIDS format
21 versions - Latest release: over 1 year ago - 6 dependent repositories - 215 downloads last month - 0 stars on GitHub - 2 maintainers
xnat4tests 0.3.10
Creates basic XNAT instance for API tests
21 versions - Latest release: 6 months ago - 3 dependent packages - 1 dependent repositories - 222 downloads last month - 4 stars on GitHub - 1 maintainer
padre 2.5.5
participant data repository
21 versions - Latest release: about 8 years ago - 2 dependent repositories - 83 downloads last month - 1 stars on GitHub - 2 maintainers
nibetaseries 0.6.0
BetaSeries Correlations implemented in Nipype
20 versions - Latest release: about 4 years ago - 1 dependent repositories - 80 downloads last month - 29 stars on GitHub - 2 maintainers
pipetography 0.3.12
Pre/Post-processing pipeline for tractography wrapped around nipype and mrtrix3
19 versions - Latest release: over 2 years ago - 1 dependent repositories - 149 downloads last month - 4 stars on GitHub - 4 maintainers
memori 0.3.6
A python library for creating memoized data and code for neuroimaging pipelines
19 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 10 downloads last month - 0 stars on GitHub - 1 maintainer
Top 7.2% on pypi.org
nobrainer 1.2.1
A framework for developing neural network models for 3D image processing.
18 versions - Latest release: about 1 month ago - 1 dependent package - 4 dependent repositories - 185 downloads last month - 138 stars on GitHub - 6 maintainers
brainweb 1.6.2 💰
BrainWeb-based multimodal models of 20 normal brains
18 versions - Latest release: over 3 years ago - 1 dependent package - 3 dependent repositories - 245 downloads last month - 27 stars on GitHub - 2 maintainers
neuropredict 0.6.2
easy and standardized predictive analysis for biomarkers, neuroimaging, and beyond
18 versions - Latest release: about 1 year ago - 1 dependent repositories - 87 downloads last month - 99 stars on GitHub - 2 maintainers
compose-runner 0.4.6
A package for running neurosynth-compose analyses
17 versions - Latest release: 3 months ago - 188 downloads last month - 0 stars on GitHub - 2 maintainers
nisnap 0.4.1
nisnap
17 versions - Latest release: 10 months ago - 1 dependent package - 1 dependent repositories - 98 downloads last month - 8 stars on GitHub - 4 maintainers
Top 8.1% on pypi.org
brainstat 0.4.2
A toolbox for statistical analysis of neuroimaging data
17 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 558 downloads last month - 61 stars on GitHub - 4 maintainers
easylearn 0.1.20a0
This project is designed for machine learning in resting-state fMRI field
17 versions - Latest release: over 3 years ago - 1 dependent repositories - 180 downloads last month - 35 stars on GitHub - 2 maintainers
imaging-transcriptomics 1.1.11
A package to perform imaging transcriptomics analysis on a neuroimaging brain scan.
16 versions - Latest release: over 1 year ago - 1 dependent repositories - 118 downloads last month - 14 stars on GitHub - 1 maintainer
mne-nirs 0.6.0
An MNE compatible package for processing near-infrared spectroscopy data.
16 versions - Latest release: 6 months ago - 1 dependent repositories - 381 downloads last month - 72 stars on GitHub - 4 maintainers
Top 7.1% on pypi.org
intensity-normalization 2.2.4
normalize the intensities of various MR image modalities
16 versions - Latest release: 11 months ago - 1 dependent package - 2 dependent repositories - 280 downloads last month - 295 stars on GitHub - 1 maintainer
Top 3.4% on pypi.org
mne-bids 0.11.1
MNE-BIDS: Organizing MEG, EEG, and iEEG data according to the BIDS specification and facilitating...
16 versions - Latest release: over 1 year ago - 9 dependent packages - 50 dependent repositories - 17 thousand downloads last month - 120 stars on GitHub - 3 maintainers
Top 9.6% on pypi.org
bdpy 0.21.1
Brain decoder toolbox for Python
16 versions - Latest release: 5 months ago - 4 dependent repositories - 180 downloads last month - 31 stars on GitHub - 1 maintainer
fslfeatsetup 0.4.8 removed
a small set of tools for create FSL FEAT .fsf configuration files
15 versions - Latest release: almost 3 years ago - 1 dependent repositories - 130 downloads last month - 1 stars on GitHub - 2 maintainers
convert-source 0.1.1
Converts and organises source MR image data-sets in accordance with the Brain Imaging Data Struct...
15 versions - Latest release: about 3 years ago - 1 dependent repositories - 15 downloads last month - 1 stars on GitHub - 2 maintainers
neurocombat 0.2.12
ComBat algorithm for harmonizing multi-site imaging data
15 versions - Latest release: almost 3 years ago - 1 dependent repositories - 374 downloads last month - 96 stars on GitHub - 2 maintainers
bsl 0.6.4
Real-time framework for online neuroscience research through LSL-compatible devices.
15 versions - Latest release: 8 months ago - 394 downloads last month - 0 stars on GitHub - 2 maintainers
Top 9.3% on pypi.org
brainiak 0.9.1
Brain Imaging Analysis Kit
14 versions - Latest release: over 4 years ago - 5 dependent repositories - 130 downloads last month - 322 stars on GitHub - 8 maintainers
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data
13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 100 downloads last month - 22 stars on GitHub - 2 maintainers
Top 5.6% on pypi.org
pycortex 1.2.8
Python Cortical mapping software for fMRI data
13 versions - Latest release: 14 days ago - 1 dependent package - 7 dependent repositories - 383 downloads last month - 556 stars on GitHub - 2 maintainers
lesion-metrics 0.1.12
metrics for evaluating lesion segmentations
13 versions - Latest release: over 2 years ago - 1 dependent repositories - 78 downloads last month - 2 stars on GitHub - 2 maintainers
neurograph 3.0.0
12 versions - Latest release: 2 months ago - 139 downloads last month - 2 maintainers
bioexplorer 1.7.1
Python API for the Blue Brain BioExplorer
12 versions - Latest release: 5 months ago - 2 dependent repositories - 53 downloads last month - 62 stars on GitHub - 4 maintainers
pyradigm 0.6.5
Python-based data structure to improve handling of datasets in machine learning workflows
12 versions - Latest release: about 1 year ago - 2 dependent packages - 5 dependent repositories - 364 downloads last month - 26 stars on GitHub - 1 maintainer
brainart 1.0.9 💰
make images out of brain imaging data
12 versions - Latest release: almost 7 years ago - 2 dependent repositories - 42 downloads last month - 4 stars on GitHub - 2 maintainers
niutils 0.7.0
Various utilities to fast-track some boring python coding.
12 versions - Latest release: 9 days ago - 1 dependent repositories - 218 downloads last month - 1 stars on GitHub - 2 maintainers
qtim_tools 0.1.12
A library for medical imaging analysis, with an emphasis on MRI, machine learning, and neuroimagi...
12 versions - Latest release: about 7 years ago - 21 downloads last month - 11 stars on GitHub - 2 maintainers
ascnii 0.0.1.dev21
View brain images in terminal using ASCII characters
12 versions - Latest release: 17 days ago - 90 downloads last month - 5 stars on GitHub - 2 maintainers
dyneusr 0.3.11
Dynamical Neural Spatiotemporal Representations.
12 versions - Latest release: almost 2 years ago - 3 dependent repositories - 85 downloads last month - 42 stars on GitHub - 2 maintainers
bjdata 0.4.1
Binary JData and UBJSON encoder/decoder
11 versions - Latest release: 7 months ago - 1 dependent repositories - 113 downloads last month - 1 stars on GitHub - 2 maintainers
conpagnon 2.0.11
Easy Resting State Analysis with Python
11 versions - Latest release: almost 4 years ago - 45 downloads last month - 3 stars on GitHub - 2 maintainers
Top 8.7% on pypi.org
pyprep 0.4.3
A Python implementation of the preprocessing pipeline (PREP) for EEG data.
11 versions - Latest release: 7 months ago - 4 dependent repositories - 1.88 thousand downloads last month - 117 stars on GitHub - 4 maintainers
pydra-freesurfer 0.0.11
Pydra tasks for FreeSurfer
11 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 445 downloads last month - 5 stars on GitHub - 3 maintainers
brainlit 0.3.6
Code to process and analyze brainlit data
11 versions - Latest release: 12 months ago - 1 dependent repositories - 157 downloads last month - 24 stars on GitHub - 2 maintainers
react-fmri 0.1.7
A Python package that implements REACT: Receptor-Enriched Analysis of Functional Connectivity by ...
10 versions - Latest release: almost 2 years ago - 1 dependent repositories - 67 downloads last month - 11 stars on GitHub - 4 maintainers
cubids 1.1.0
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
10 versions - Latest release: 28 days ago - 23 downloads last month - 18 stars on GitHub - 4 maintainers
mrqa 0.2.4
rQA suite of tools offering automatic evaluation of protocol compliance
10 versions - Latest release: 11 months ago - 154 downloads last month - 9 stars on GitHub - 1 maintainer
face-rhythm 0.2.5
A pipeline for analysis of facial behavior using optical flow
10 versions - Latest release: 15 days ago - 134 downloads last month - 3 stars on GitHub - 2 maintainers
Top 6.9% on pypi.org
openmeeg 2.5.8
Forward problems solver in the field of EEG and MEG.
10 versions - Latest release: about 1 month ago - 8 dependent repositories - 2.27 thousand downloads last month - 70 stars on GitHub - 4 maintainers
pybicpl 0.5.1
Python interface for basic MNI .obj file format. Supports read, write, and calculations on a vert...
10 versions - Latest release: over 1 year ago - 1 dependent repositories - 64 downloads last month - 0 stars on GitHub - 2 maintainers
freesurfer-surface 2.0.0
Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format
10 versions - Latest release: almost 3 years ago - 3 dependent repositories - 122 downloads last month - 8 stars on GitHub - 2 maintainers
pydra-bids 0.0.10
Pydra tasks for BIDS I/O
10 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 260 downloads last month - 2 stars on GitHub - 3 maintainers
bxl 0.3.4
Basic library for interacting with the REST interface of XNAT.
10 versions - Latest release: almost 5 years ago - 114 downloads last month - 2 maintainers
iptk 0.5.1
Python interface to the Imaging Pipeline Toolkit
9 versions - Latest release: almost 6 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 2 maintainers
dcdf 0.1.8
Package to compute DCDF for nifti formatted MRI data.
9 versions - Latest release: about 3 years ago - 1 dependent repositories - 26 downloads last month - 0 stars on GitHub - 1 maintainer
neuropower 0.2.8
A package to perform power analyses for neuroimaging data
9 versions - Latest release: over 7 years ago - 3 dependent repositories - 41 downloads last month - 12 stars on GitHub - 4 maintainers
pystorm3 0.1.8
Python implementation of some Brainstorm functions
9 versions - Latest release: 3 days ago - 658 downloads last month - 1 stars on GitHub - 2 maintainers
alcoholic-tfe22540 0.1.12
Framework of my master thesis on the effect of withdrawal on the white matter of alcoholic patien...
9 versions - Latest release: 10 months ago - 36 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.7% on pypi.org
bidsschematools 0.8.0
Python tools for working with the BIDS schema.
9 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 26 thousand downloads last month - 252 stars on GitHub - 4 maintainers
qmvpa 0.54
my MVPA package
9 versions - Latest release: over 5 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 2 maintainers
neuroboros 0.1.7
Neuroimaging analysis in Python
9 versions - Latest release: 3 months ago - 25 downloads last month - 3 stars on GitHub - 2 maintainers
neurocaps 0.8.8
Co-activation patterns Python package
8 versions - Latest release: about 2 months ago - 189 downloads last month - 0 stars on GitHub - 2 maintainers
pycrostates 0.5.0
A simple open source Python package for EEG microstate segmentation.
8 versions - Latest release: 3 months ago - 139 downloads last month - 33 stars on GitHub - 4 maintainers
fmristats 0.1.1
Modelling the data and not the images in FMRI
8 versions - Latest release: about 5 years ago - 1 dependent repositories - 92 downloads last month - 2 maintainers
pilab-binama 0.0.8
Functions to modify binary masks
8 versions - Latest release: about 1 year ago - 42 downloads last month - 1 stars on GitHub - 2 maintainers
Related Keywords
neuroscience 74 python 66 fmri 37 mri 37 brain 36 bids 27 nifti 20 machine-learning 19 brain-imaging 16 eeg 15 fsl 12 statistics 12 meg 11 dicom 11 freesurfer 10 MRI 10 MEG 9 EEG 9 medical-imaging 9 pydra 9 electroencephalography 9 mri-images 9 machine learning 9 surface 8 dcm2niix 7 nii 7 research 7 visualization 7 python3 7 magnetoencephalography 7 bids-format 7 deep-learning 7 cortex 6 hacktoberfest 6 quality-control 6 dcm 6 nilearn 6 meta-analysis 6 BIDS 5 gz 5 registration 5 deep learning 5 fMRI 5 dti 5 jpeg 5 jpeg-image 5 dicom-images 5 mricrogl 5 nifti-format 5 nitrc 5 electrocorticography 5 pet 5 brainweb 5 image-processing 5 ants 4 plugin 4 d2b 4 analysis 4 preprocessing 4 segmentation 4 neuroinformatics 4 workflows 4 cli 4 tool 4 nipype 4 nibabel 4 fmri-preprocessing 4 scikit-learn 4 pytorch 4 Neuroimaging 4 imaging 4 DICOM 3 afni 3 anatomical-mri 3 voxel 3 skull-stripping 3 vertex 3 data-standards 3 brain-extraction 3 django 3 brain-connectivity 3 research-data-management 3 neuroimaging-analysis 3 reader 3 mesh 3 parcellation 3 nipy 3 brain-networks 3 learning 3 data 3 science 3 fmri-data-analysis 3 combat 3 harmonization 3 normalization 3 FSL 3 cluster 3 grid 3 slurm 3 repository 3