Ecosyste.ms: Packages

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pypi.org "neuroimaging" keyword

pathmatcher 1.8.1
Regular Expression Path Matcher - Easily batch manipulate folders and files trees with regular ex...
6 versions - Latest release: about 1 year ago - 1 dependent repositories - 45 downloads last month - 4 stars on GitHub - 2 maintainers
pyradigm 0.6.5
Python-based data structure to improve handling of datasets in machine learning workflows
12 versions - Latest release: about 1 year ago - 2 dependent packages - 5 dependent repositories - 364 downloads last month - 26 stars on GitHub - 1 maintainer
freesurfer-stats 1.2.1
Python Library to Read FreeSurfer's cortical parcellation anatomical statistics
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 192 downloads last month - 12 stars on GitHub - 2 maintainers
cubids-bond-fork 0.1.0
BIDS On Disk Editor
1 version - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 73 downloads last month - 18 stars on GitHub - 1 maintainer
bidsmreye 0.3.1
bids app using deepMReye to decode eye motion for fMRI time series data
4 versions - Latest release: over 1 year ago - 37 downloads last month - 5 stars on GitHub - 1 maintainer
tmi_viewer 0.4.3
tmi_viewer
24 versions - Latest release: about 6 years ago - 84 downloads last month - 29 stars on GitHub - 2 maintainers
sihnpy 0.4.1
Study of inter-individual heterogeneity of neuroimaging in Python (SIHNpy)
6 versions - Latest release: 12 months ago - 36 downloads last month - 1 stars on GitHub - 2 maintainers
pydra-fsl 0.0.22
Pydra tasks for FSL
22 versions - Latest release: 8 months ago - 1 dependent package - 448 downloads last month - 3 stars on GitHub - 3 maintainers
gradiator 0.0.1.dev14
turn covariance matrices into brain gradients
1 version - Latest release: over 1 year ago - 14 downloads last month - 2 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
intensity-normalization 2.2.4
normalize the intensities of various MR image modalities
16 versions - Latest release: 11 months ago - 1 dependent package - 2 dependent repositories - 280 downloads last month - 295 stars on GitHub - 1 maintainer
neurodatapub 0.4
NeuroDataPub: Tool built for publication of BIDS datasets of the NCCR-Synapsy
4 versions - Latest release: over 2 years ago - 1 dependent repositories - 28 downloads last month - 2 stars on GitHub - 2 maintainers
Top 9.3% on pypi.org
brainiak 0.9.1
Brain Imaging Analysis Kit
14 versions - Latest release: over 4 years ago - 5 dependent repositories - 130 downloads last month - 322 stars on GitHub - 8 maintainers
phys2cvr 0.18.3
Python library to generate regressors for and compute Cerebrovascular Reactivity and lag maps.
44 versions - Latest release: 8 months ago - 1 dependent repositories - 305 downloads last month - 4 stars on GitHub - 2 maintainers
neurograph 3.0.0
12 versions - Latest release: 2 months ago - 139 downloads last month - 2 maintainers
Top 2.7% on pypi.org
pydra 0.16.2
Pydra dataflow engine
37 versions - Latest release: almost 3 years ago - 16 dependent packages - 16 dependent repositories - 2.47 thousand downloads last month - 118 stars on GitHub - 7 maintainers
deepbet 0.0.2
Fast brain extraction using neural networks
2 versions - Latest release: 9 months ago - 1 dependent repositories - 176 downloads last month - 16 stars on GitHub - 2 maintainers
brainload 0.3.5 💰
Load FreeSurfer brain imaging data with minimal cognitive load.
8 versions - Latest release: over 4 years ago - 2 dependent repositories - 64 downloads last month - 9 stars on GitHub - 2 maintainers
Top 2.3% on pypi.org
pybids 0.16.4
bids: interface with datasets conforming to BIDS
48 versions - Latest release: 5 months ago - 40 dependent packages - 163 dependent repositories - 29.4 thousand downloads last month - 211 stars on GitHub - 3 maintainers
quickshear 1.2.0
Quickshear Defacing for Neuroimages
3 versions - Latest release: 12 months ago - 1 dependent repositories - 39 downloads last month - 11 stars on GitHub - 2 maintainers
bjdata 0.4.1
Binary JData and UBJSON encoder/decoder
11 versions - Latest release: 7 months ago - 1 dependent repositories - 113 downloads last month - 1 stars on GitHub - 2 maintainers
neurolang 0.1a19
"NeuroLang: Probabilistic Logic Programming for NeuroScience Research"
6 versions - Latest release: 7 months ago - 1 dependent repositories - 49 downloads last month - 6 stars on GitHub - 1 maintainer
nqdc 0.0.3
Download neuroimaging articles and extract text and stereotactic coordinates.
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 39 downloads last month - 0 stars on GitHub - 2 maintainers
Top 5.6% on pypi.org
pycortex 1.2.8
Python Cortical mapping software for fMRI data
13 versions - Latest release: 13 days ago - 1 dependent package - 7 dependent repositories - 383 downloads last month - 556 stars on GitHub - 2 maintainers
clinica-pydra-ants 0.1.1
Pydra tasks for ANTs designed for Clinica
2 versions - Latest release: 14 days ago - 210 downloads last month - 0 stars on GitHub - 2 maintainers
Top 6.3% on pypi.org
templateflow 24.2.0
TemplateFlow Python Client - TemplateFlow is the Zone of neuroimaging templates.
47 versions - Latest release: about 2 months ago - 16 dependent packages - 31 dependent repositories - 24.3 thousand downloads last month - 70 stars on GitHub - 4 maintainers
Top 7.0% on pypi.org
pynv 0.1.1
A Python library for interfacing with http://neurovault.org upload API
4 versions - Latest release: almost 7 years ago - 1 dependent package - 9 dependent repositories - 2.46 thousand downloads last month - 18 stars on GitHub - 4 maintainers
p3proc 0.1.2
The p3 fmri processing pipeline
2 versions - Latest release: over 5 years ago - 1 dependent repositories - 29 downloads last month - 0 stars on GitHub - 4 maintainers
graynet 0.5.6
Individualized single-subject networks from T1 mri features such as cortical thickness and gray m...
21 versions - Latest release: about 1 year ago - 1 dependent repositories - 164 downloads last month - 34 stars on GitHub - 1 maintainer
nisnap 0.4.1
nisnap
17 versions - Latest release: 10 months ago - 1 dependent package - 1 dependent repositories - 98 downloads last month - 8 stars on GitHub - 4 maintainers
react-fmri 0.1.7
A Python package that implements REACT: Receptor-Enriched Analysis of Functional Connectivity by ...
10 versions - Latest release: almost 2 years ago - 1 dependent repositories - 67 downloads last month - 11 stars on GitHub - 4 maintainers
Top 9.6% on pypi.org
bdpy 0.21.1
Brain decoder toolbox for Python
16 versions - Latest release: 5 months ago - 4 dependent repositories - 180 downloads last month - 31 stars on GitHub - 1 maintainer
fsl-sub-plugin-slurm 1.6.2
FSL Cluster Submission Plugin for Slurm
4 versions - Latest release: 3 months ago - 59 downloads last month - 2 maintainers
hypercoil 0.1.0.dev1
Differentiable programming for neuroimaging analysis
1 version - Latest release: 9 months ago - 2 dependent packages - 1 dependent repositories - 6 downloads last month - 4 stars on GitHub - 2 maintainers
face-rhythm 0.2.5
A pipeline for analysis of facial behavior using optical flow
10 versions - Latest release: 15 days ago - 134 downloads last month - 3 stars on GitHub - 2 maintainers
Top 9.0% on pypi.org
neuroquery 1.0.4
Meta-analysis of neuroimaging studies.
5 versions - Latest release: 10 months ago - 1 dependent package - 4 dependent repositories - 88 downloads last month - 30 stars on GitHub - 1 maintainer
niseq 0.0.2
Group sequential tests for neuroimaging
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 23 downloads last month - 8 stars on GitHub - 2 maintainers
Top 7.2% on pypi.org
nobrainer 1.2.1
A framework for developing neural network models for 3D image processing.
18 versions - Latest release: about 1 month ago - 1 dependent package - 4 dependent repositories - 185 downloads last month - 138 stars on GitHub - 6 maintainers
pipetography 0.3.12
Pre/Post-processing pipeline for tractography wrapped around nipype and mrtrix3
19 versions - Latest release: over 2 years ago - 1 dependent repositories - 149 downloads last month - 4 stars on GitHub - 4 maintainers
nanslice 1.0.0
Scripts to slice and display neuroimages (probably stored in nifti format)
3 versions - Latest release: about 4 years ago - 1 dependent repositories - 28 downloads last month - 39 stars on GitHub - 2 maintainers
psychopykit 2023.8.17 💰
Psychopy output conversion utilities
3 versions - Latest release: 9 months ago - 29 downloads last month - 2 maintainers
visualqc 0.6.6
Assistive tool for the quality control of neuroimaging data
30 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 272 downloads last month - 72 stars on GitHub - 2 maintainers
alcoholic-tfe22540 0.1.12
Framework of my master thesis on the effect of withdrawal on the white matter of alcoholic patien...
9 versions - Latest release: 10 months ago - 36 downloads last month - 0 stars on GitHub - 1 maintainer
nitrain 0.3.0
Cloud-based framework for training and sharing medical imaging AI models
4 versions - Latest release: 16 days ago - 240 downloads last month - 1,844 stars on GitHub - 2 maintainers
qipype 3.2
nipype interfaces to QUantitative Imaging Tools
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 12 downloads last month - 55 stars on GitHub - 2 maintainers
niatlas 0.0.1
atlas classes and methods for neuroimaging
1 version - Latest release: almost 5 years ago - 1 dependent repositories - 17 downloads last month - 2 stars on GitHub - 2 maintainers
medimages4tests 0.3.3
Generates dummy medical image data with realistic headers to be used in image handling tests
6 versions - Latest release: 6 months ago - 8 dependent packages - 1 dependent repositories - 1.25 thousand downloads last month - 0 stars on GitHub - 1 maintainer
dyconnmap 1.0.4
A dynamic connectome mapping module in Python
4 versions - Latest release: about 3 years ago - 1 dependent repositories - 32 downloads last month - 96 stars on GitHub - 2 maintainers
ascnii 0.0.1.dev21
View brain images in terminal using ASCII characters
12 versions - Latest release: 17 days ago - 90 downloads last month - 5 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
neuromaps 0.0.5
A toolbox for projecting, resampling, and comparing brain maps
5 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 307 downloads last month - 208 stars on GitHub - 5 maintainers
nidmviewer 0.1.3 💰
command line or server tool to view or compare nidm results.
3 versions - Latest release: almost 8 years ago - 2 dependent repositories - 10 downloads last month - 3 stars on GitHub - 2 maintainers
nii-plot 1.0.0 💰
Plot mean NIfTI timeseries
2 versions - Latest release: about 2 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
freesurfer-surface 2.0.0
Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format
10 versions - Latest release: almost 3 years ago - 3 dependent repositories - 122 downloads last month - 8 stars on GitHub - 2 maintainers
Top 7.1% on pypi.org
pydra-dcm2niix 1.2.1
Provides a task interface for the popular dcm2niix DICOM to NIfTI converter
6 versions - Latest release: 10 months ago - 3 dependent packages - 2 dependent repositories - 770 downloads last month - 805 stars on GitHub - 4 maintainers
Top 2.5% on pypi.org
fslpy 3.18.2
FSL Python library
115 versions - Latest release: about 1 month ago - 9 dependent packages - 18 dependent repositories - 4.1 thousand downloads last month - 805 stars on GitHub - 2 maintainers
Top 4.4% on pypi.org
dcm2niix 1.0.20220715
DCM2NIIX Python package
2 versions - Latest release: almost 2 years ago - 8 dependent packages - 3 dependent repositories - 4.48 thousand downloads last month - 805 stars on GitHub - 2 maintainers
pydcm2niix 1.0.20220116
DCM2NIIX Python package
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 16 downloads last month - 805 stars on GitHub - 1 maintainer
freesurfer-volume-reader 2.1.1
Python script & library to read hippocampal subfield volumescomputed by Freesurfer & ASHS
8 versions - Latest release: almost 3 years ago - 1 dependent repositories - 85 downloads last month - 4 stars on GitHub - 2 maintainers
pyrobex 0.4.3
python bindings for ROBEX brain extraction
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 4 stars on GitHub - 1 maintainer
cdn-fmri 0.0.2
Implementations of Causal Dynamic Network Analysis of fMRI
3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 22 downloads last month - 12 stars on GitHub - 2 maintainers
neuropredict 0.6.2
easy and standardized predictive analysis for biomarkers, neuroimaging, and beyond
18 versions - Latest release: about 1 year ago - 1 dependent repositories - 87 downloads last month - 99 stars on GitHub - 2 maintainers
mrdataset 0.4.4
MRdataset
7 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 235 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
brainstat 0.4.2
A toolbox for statistical analysis of neuroimaging data
17 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 558 downloads last month - 61 stars on GitHub - 4 maintainers
neurocombat 0.2.12
ComBat algorithm for harmonizing multi-site imaging data
15 versions - Latest release: almost 3 years ago - 1 dependent repositories - 374 downloads last month - 96 stars on GitHub - 2 maintainers
dyneusr 0.3.11
Dynamical Neural Spatiotemporal Representations.
12 versions - Latest release: almost 2 years ago - 3 dependent repositories - 85 downloads last month - 42 stars on GitHub - 2 maintainers
nii-info 1.0.1 💰
Display NIfTI image information in a tabular format
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 2 maintainers
airflow-imaging-plugins 2.4.3
Airflow plugins to support Neuroimaging tasks.
43 versions - Latest release: over 6 years ago - 1 dependent repositories - 151 downloads last month - 15 stars on GitHub - 2 maintainers
nisupply 2023.3.10
A python module for dealing with unstructured or semi-structured neuroimaging datasets which do n...
3 versions - Latest release: about 1 year ago - 93 downloads last month - 2 stars on GitHub - 2 maintainers
nilearn-extra 0.1.1
Drop-in extra functionalities for nilearn (statistics for neuroimaging in Python)
2 versions - Latest release: almost 2 years ago - 16 downloads last month - 1 stars on GitHub - 2 maintainers
simplebrainviewer 0.3.2
A simple brain viewer using matplotlib
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 1 maintainer
neuropreprocessing 0.1.0
1 version - Latest release: 4 months ago - 12 downloads last month - 2 maintainers
confounds 0.1.3
Conquering confounds and covariates in machine learning
6 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 68 downloads last month - 38 stars on GitHub - 2 maintainers
fmripreprocessing 0.1.0
1 version - Latest release: 4 months ago - 4 downloads last month - 1 maintainer
brainsimulator 0.5.4
Nuclear brain imaging synthesis with python
4 versions - Latest release: over 6 years ago - 14 downloads last month - 0 stars on GitHub - 2 maintainers
neuro-tools 0.1.1
Neuroimaging tools to help with BIDS, XNAT, workflows, etc.
2 versions - Latest release: over 5 years ago - 1 dependent repositories - 20 downloads last month - 0 stars on GitHub - 2 maintainers
neuroprep 0.2.0
2 versions - Latest release: 4 months ago - 14 downloads last month - 2 maintainers
iptk 0.5.1
Python interface to the Imaging Pipeline Toolkit
9 versions - Latest release: almost 6 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 2 maintainers
Top 9.7% on pypi.org
datalad-neuroimaging 0.3.5
DataLad extension package for neuro/medical imaging
22 versions - Latest release: about 2 months ago - 2 dependent repositories - 696 downloads last month - 17 stars on GitHub - 6 maintainers
lesion-metrics 0.1.12
metrics for evaluating lesion segmentations
13 versions - Latest release: over 2 years ago - 1 dependent repositories - 78 downloads last month - 2 stars on GitHub - 2 maintainers
imaging-transcriptomics 1.1.11
A package to perform imaging transcriptomics analysis on a neuroimaging brain scan.
16 versions - Latest release: over 1 year ago - 1 dependent repositories - 118 downloads last month - 14 stars on GitHub - 1 maintainer
nobrainer-zoo 0.2.0
A framework for inference and re-training of pretrained neuroimaging models
1 version - Latest release: over 1 year ago - 6 downloads last month - 8 stars on GitHub - 2 maintainers
dmipy 1.0.5
dmipy: diffusion microstructure imaging in python
4 versions - Latest release: over 3 years ago - 3 dependent repositories - 78 downloads last month - 92 stars on GitHub - 4 maintainers
nibetaseries 0.6.0
BetaSeries Correlations implemented in Nipype
20 versions - Latest release: about 4 years ago - 1 dependent repositories - 80 downloads last month - 29 stars on GitHub - 2 maintainers
qmvpa 0.54
my MVPA package
9 versions - Latest release: over 5 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 2 maintainers
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data
13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 100 downloads last month - 22 stars on GitHub - 2 maintainers
ciftify 2.3.3
The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
3 versions - Latest release: almost 4 years ago - 98 downloads last month - 102 stars on GitHub - 1 maintainer
mni-to-atlas 1.1.0
A simple Python-based tool for finding brain atlas regions based on MNI coordinates.
6 versions - Latest release: 5 months ago - 29 downloads last month - 7 stars on GitHub - 2 maintainers
pydra-ants 0.0.5
Pydra tasks for ANTs
5 versions - Latest release: 9 months ago - 25 downloads last month - 0 stars on GitHub - 4 maintainers
deepneuro 0.2.3
DeepNeuro: A deep learning python package for neuroimaging data.
6 versions - Latest release: almost 5 years ago - 1 dependent repositories - 26 downloads last month - 121 stars on GitHub - 4 maintainers
Top 6.8% on pypi.org
dcm2bids 3.1.1
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
24 versions - Latest release: 7 months ago - 7 dependent repositories - 1 thousand downloads last month - 147 stars on GitHub - 4 maintainers
neuroboros 0.1.7
Neuroimaging analysis in Python
9 versions - Latest release: 3 months ago - 25 downloads last month - 3 stars on GitHub - 2 maintainers
scdn 0.0.2
Estimating high dimensional ODE models from convoluted observations with an application to fMRI
3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 15 downloads last month - 3 stars on GitHub - 2 maintainers
xnat4tests 0.3.10
Creates basic XNAT instance for API tests
21 versions - Latest release: 6 months ago - 3 dependent packages - 1 dependent repositories - 222 downloads last month - 4 stars on GitHub - 1 maintainer
Top 6.7% on pypi.org
bidsschematools 0.8.0
Python tools for working with the BIDS schema.
9 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 26 thousand downloads last month - 252 stars on GitHub - 4 maintainers
brainplotlib 1.0.0
A lightweight package to plot brain surfaces with Python.
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 42 downloads last month - 31 stars on GitHub - 1 maintainer
bioexplorer 1.7.1
Python API for the Blue Brain BioExplorer
12 versions - Latest release: 5 months ago - 2 dependent repositories - 53 downloads last month - 62 stars on GitHub - 4 maintainers
mediamaker 0.3.1
Media Maker Python SDK for Blue Brain BioExplorer
2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 11 downloads last month - 62 stars on GitHub - 2 maintainers
dyneusr-fire 0.0.3
A command line interface for DyNeuSR
2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 11 downloads last month - 2 stars on GitHub - 2 maintainers
pydfc 1.0.4
This package aims to provide a comprehensive framework for assessing dynamic functional connectiv...
1 version - Latest release: about 2 months ago - 127 downloads last month - 4 maintainers
warpkit 0.1.1
A python library for neuroimaging transformations
3 versions - Latest release: 5 months ago - 18 downloads last month - 5 stars on GitHub - 2 maintainers
evaler 0.0.2
Evaler.
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 26 downloads last month - 3 stars on GitHub - 1 maintainer
Related Keywords
neuroscience 74 python 66 mri 37 fmri 37 brain 36 bids 27 nifti 20 machine-learning 19 brain-imaging 16 eeg 15 fsl 12 statistics 12 dicom 11 meg 11 freesurfer 10 MRI 10 EEG 9 MEG 9 electroencephalography 9 mri-images 9 pydra 9 medical-imaging 9 machine learning 9 surface 8 python3 7 nii 7 visualization 7 research 7 bids-format 7 dcm2niix 7 deep-learning 7 magnetoencephalography 7 dcm 6 hacktoberfest 6 meta-analysis 6 quality-control 6 nilearn 6 cortex 6 dicom-images 5 gz 5 jpeg 5 jpeg-image 5 mricrogl 5 registration 5 fMRI 5 BIDS 5 dti 5 electrocorticography 5 nifti-format 5 deep learning 5 nitrc 5 pet 5 brainweb 5 image-processing 5 fmri-preprocessing 4 cli 4 segmentation 4 neuroinformatics 4 workflows 4 nipype 4 nibabel 4 ants 4 analysis 4 d2b 4 plugin 4 imaging 4 Neuroimaging 4 tool 4 scikit-learn 4 preprocessing 4 pytorch 4 brain-connectivity 3 data 3 learning 3 spm 3 mri-brain 3 diffusion-mri 3 deeplearning 3 DICOM 3 tractography 3 brain-networks 3 parcellation 3 nipy 3 data-standards 3 skull-stripping 3 feature-extraction 3 combat 3 harmonization 3 normalization 3 ecog 3 mesh 3 afni 3 vertex 3 voxel 3 neuroimaging-analysis 3 research-data-management 3 repository 3 django 3 ECoG 3 science 3