Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "spatial transcriptomics" keyword
deeptalk-st 0.0.12
Cell-cell communication prediction for ST data3 versions - Latest release: 6 months ago - 21 downloads last month - 0 stars on GitHub - 1 maintainer
humanheartspatial 0.0.4
Python package for analysis of slide-seq data on heart tissue4 versions - Latest release: 6 months ago - 16 downloads last month - 1 maintainer
dissect-deconv 0.1 removed
1 version - Latest release: 4 months ago - 1 maintainernode-deconvolution-scipy 0.1.3
A Python program for deconvolution spatial transcriptomics data and inference of spatial communic...1 version - Latest release: 20 days ago - 154 downloads last month - 0 stars on GitHub - 1 maintainer
node-deconvolution 0.1.3
A Python program for deconvolution spatial transcriptomics data and inference of spatial communic...1 version - Latest release: 23 days ago - 159 downloads last month - 0 stars on GitHub - 1 maintainer
Top 3.2% on pypi.org
13 versions - Latest release: 4 months ago - 43 dependent packages - 23 dependent repositories - 7.44 thousand downloads last month - 392 stars on GitHub - 3 maintainers
squidpy 1.4.1
Spatial Single Cell Analysis in Python13 versions - Latest release: 4 months ago - 43 dependent packages - 23 dependent repositories - 7.44 thousand downloads last month - 392 stars on GitHub - 3 maintainers
soapy-st 0.1.4
Spatial Omics Analysis in Python4 versions - Latest release: 5 months ago - 40 downloads last month - 5 stars on GitHub - 1 maintainer
humanspatialheart 0.0.6
Python package for analysis of slide-seq data on heart tissue6 versions - Latest release: 8 months ago - 52 downloads last month - 1 maintainer
spatialhumanheart 0.0.4
Python package for analysis of slide-seq data on heart tissue3 versions - Latest release: 8 months ago - 25 downloads last month - 1 maintainer
nico-sc-sp 0.1.0
This package finds covariation patterns between interacted niche cell types from single-cell reso...10 versions - Latest release: 5 months ago - 76 downloads last month - 24 stars on GitHub - 1 maintainer
somde 0.1.8
Algorithm for finding gene spatial pattern based on Gaussian process accelerated by SOM7 versions - Latest release: about 3 years ago - 2 dependent packages - 1 dependent repositories - 88 downloads last month - 4 stars on GitHub - 1 maintainer
sagenet 0.1.1
Spatial reconstruction of dissociated single-cell data2 versions - Latest release: over 2 years ago - 1 dependent repositories - 13 downloads last month - 16 stars on GitHub - 1 maintainer
pysmfish 0.1.5
Analysis of large spatial transcriptomics data (osmFISH).10 versions - Latest release: over 5 years ago - 1 dependent repositories - 53 downloads last month - 1 maintainer
muse-sc 0.0.8
MUSE is a deep learning approach characterizing tissue composition through combined analysis of m...8 versions - Latest release: over 3 years ago - 1 dependent repositories - 66 downloads last month - 27 stars on GitHub - 1 maintainer
commot 0.0.3
Cell-cell communications inference for spatial transcriptomics data via optimal transport.2 versions - Latest release: over 1 year ago - 1 dependent repositories - 194 downloads last month - 218 stars on GitHub - 1 maintainer
celerypy 1.2.1
Leverage spatial transcriptomics data to recover cell locations in single-cell RNA RNA-seq10 versions - Latest release: about 1 month ago - 170 downloads last month - 21 stars on GitHub - 1 maintainer
ecmanalysis 0.0.18
Tools for analysis of the extracellular matrix18 versions - Latest release: over 1 year ago - 67 downloads last month - 1 maintainer
step-kit 0.2.2
STEP, an acronym for Spatial Transcriptomics Embedding Procedure, is a deep learning-based tool f...4 versions - Latest release: 29 days ago - 315 downloads last month - 3 stars on GitHub - 1 maintainer
Related Keywords
deep learning
4
python
4
scRNA-seq
3
slide-seq
3
heart tissue
3
human heart
3
bioinformatics
3
spatial data analysis
3
single-cell
3
deconvolution
3
bio-informatics
3
spatial-transcriptomics
2
spatial communication
2
cell-cell communicaiton
2
image analysis
1
SpatialDE
1
self organizing map(SOM)
1
single-cell data analysis
1
singlecell
1
transcriptomics
1
single-cell analysis
1
clustering
1
data-integration
1
deep-learning
1
multi-modal-analysis
1
single-cell-ananlysis
1
tensorflow
1
optimal transport
1
CeLEry
1
extracellular matrix
1
matrisome
1
single-cell RNA-seq
1
SRT
1
step
1
STEP
1
bulk rna sequencing
1
single cell sequencing
1
data-visualization
1
image-analysis
1
single-cell-genomics
1
single-cell-rna-seq
1
spatial-analysis
1
machine learning
1
squidpy
1
spatial omics
1
niche
1
single-cell RNA sequencing
1
scRNAseq
1
MERFISH
1
seqFISH
1
STARmap
1
nico
1
niche covariation
1
multi-omic-integration
1
non-negative-matrix-factorization
1