Ecosyste.ms: Packages

bioinformatics 37 python 29 deep-learning 20 rna-seq 20 scrna-seq 16 machine-learning 15 genomics 14 single-cell-rna-seq 14 single-cell-analysis 13 anndata 13 computational-biology 12 single-cell-genomics 12 transcriptomics 11 clustering 10 visualization 8 data-science 7 spatial-transcriptomics 7 scanpy 7 pytorch 7 spatial 6 data-visualization 6 single cell 5 dimensionality-reduction 5 RNA-seq 5 scRNA-seq 5 bio-informatics 5 scatac-seq 4 multiomics 4 pseudo-time 4 kinetics 4 manifold-learning 4 data-integration 4 gene-regulatory-network 4 biology 4 optimal-transport 4 scverse 4 gene-expression 4 spatial data analysis 3 data 3 scrna-seq-analysis 3 imputation 3 network 3 cell-cell-communication 3 bulk-rna-seq 3 methylation 3 spatial transcriptomics 3 omics 3 spatialomics 3 integration 3 multi-omics 3 evolution 3 embedding 3 multi-omic-integration 3 cancer 3 human-cell-atlas 3 phylogenetics 3 RNA 3 epigenomics 3 pipeline 3 analysis 3 single-cell-omics 3 epigenetics 3 pip 3 semi-supervised-learning 3 scRNAseq 3 single 2 denoising 2 cell 2 sequencing 2 rna 2 rna-velocity 2 dynamical-systems 2 ligand-receptor 2 r 2 jupyter 2 crispr 2 spatial-omics 2 gtf 2 10x 2 gencode 2 trajectory-inference 2 gff 2 rnaseq 2 nearest-neighbors 2 scrnaseq 2 single-cell-sequencing 2 gene expression 2 online-integration 2 scalex 2 trajectory 2 dna-methylation 2 cell-type-classification 2 MERFISH 2 unsupervised-learning 2 non-negative-matrix-factorization 2 big-data 2 graph-neural-networks 2 cell-cell-interaction 2 outlier-detection 2 Deep Learning 2