Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "bio-informatics" keyword
moscot 0.3.4
Multi-omic single-cell optimal transport tools7 versions - Latest release: 3 months ago - 287 downloads last month - 96 stars on GitHub - 1 maintainer
Top 3.2% on pypi.org
14 versions - Latest release: 4 months ago - 43 dependent packages - 23 dependent repositories - 6.66 thousand downloads last month - 397 stars on GitHub - 3 maintainers
squidpy 1.4.1
Spatial Single Cell Analysis in Python14 versions - Latest release: 4 months ago - 43 dependent packages - 23 dependent repositories - 6.66 thousand downloads last month - 397 stars on GitHub - 3 maintainers
eclair 1.18
Robust inference of cell lineages from gene expression data via consensus clustering and the aggr...7 versions - Latest release: about 8 years ago - 1 dependent repositories - 37 downloads last month - 1 stars on GitHub - 1 maintainer
b2btools 3.0.7
bio2Byte software suite to predict protein biophysical properties from their amino-acid sequences47 versions - Latest release: about 1 month ago - 419 downloads last month - 2 maintainers
galgo 0.0.6
A collection of algorithms and tools for genome analysis18 versions - Latest release: over 8 years ago - 2 dependent repositories - 82 downloads last month - 1 stars on GitHub - 1 maintainer
idquant 1.0.1
Calculation of metabolite concentrations from C12 and C13 Mass Spectrometry Integrated Data2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 21 downloads last month - 0 stars on GitHub - 1 maintainer
hugobio 1.3
bio-informatics1 version - Latest release: 7 months ago - 12 downloads last month - 1 maintainer
graphcompass 0.2.2
Spatial metrics for differential analyses of cell organization across conditions7 versions - Latest release: 3 months ago - 56 downloads last month - 15 stars on GitHub - 2 maintainers
soapy-st 0.1.4
Spatial Omics Analysis in Python4 versions - Latest release: 5 months ago - 40 downloads last month - 5 stars on GitHub - 1 maintainer
conformine 0.0.1b14 removed
ConforMine, a predictor of conformational variability from amino acid sequence4 versions - Latest release: about 1 year ago - 73 downloads last month - 1 maintainer
campa 1.1.0
Conditional Autoencoders for Multiplexed Pixel Analysis2 versions - Latest release: over 1 year ago - 1 dependent repositories - 15 downloads last month - 13 stars on GitHub - 1 maintainer
sagenet 0.1.1
Spatial reconstruction of dissociated single-cell data2 versions - Latest release: over 2 years ago - 1 dependent repositories - 13 downloads last month - 16 stars on GitHub - 1 maintainer
crisprbuilder-tb 0.1.47
Collect and annotate Mycobacterium tuberculosis WGS data for CRISPR investigations.9 versions - Latest release: almost 4 years ago - 1 dependent repositories - 60 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
32 versions - Latest release: about 2 months ago - 5 dependent packages - 5 dependent repositories - 3.16 thousand downloads last month - 299 stars on GitHub - 3 maintainers
cellrank 2.0.4
CellRank: dynamics from multi-view single-cell data32 versions - Latest release: about 2 months ago - 5 dependent packages - 5 dependent repositories - 3.16 thousand downloads last month - 299 stars on GitHub - 3 maintainers
Related Keywords
single-cell
5
spatial data analysis
5
fasta
3
bioinformatics
3
spatial transcriptomics
3
biology
3
proteins
2
b2bTools
2
spatial omics
2
machine-learning
2
image analysis
2
single-cell-genomics
2
single-cell-rna-seq
2
trajectory-generation
1
rna-velocity
1
markov-chains
1
manifold-learning
1
protein-folding
1
genome
1
python
1
cell spatial organization
1
graph analytics
1
tissue architecture
1
protein-conformation
1
conformational-variability
1
multiplexed imaging
1
subcellular landmarks
1
single-cell data analysis
1
tuberculosis
1
CRISPR
1
package
1
RNA velocity
1
Markov chain
1
GPCCA
1
cell-fate-determination
1
cell-fate-transitions
1
data-science
1
fuzzy-clustering-analyses
1
genetics
1
optimal transport
1
optimal-transport
1
data-visualization
1
image-analysis
1
spatial-analysis
1
spatial-transcriptomics
1
squidpy
1
aggregation
1
clustering
1
computational-biology
1
consensus
1
consensus-clustering
1
cytometry
1
data-mining
1
ensemble
1
ensemble-clustering
1
gene
1
gene-expression
1
graph
1
graph-matching
1
matching
1
pattern-recognition
1
qPCR
1
tree
1
tree-matching
1
unsupervised-learning
1
bio2byte
1