Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "scRNA-seq" keyword
sceleto2 1.1.2
sceleto2 is a wrapper package developed by SCMGL to aid in single cell analysis.7 versions - Latest release: almost 2 years ago - 23 downloads last month - 1 maintainer
dsae-impute 1.1.4
scRNA-seq imputation2 versions - Latest release: over 3 years ago - 1 dependent repositories - 14 downloads last month - 2 stars on GitHub - 1 maintainer
diopy 0.5.5
The single cell data IO between R and Python(Python version)9 versions - Latest release: over 2 years ago - 1 dependent repositories - 148 downloads last month - 1 maintainer
phenotype-cover 0.9
phenotype_cover is a package for biomarker discovery using multiset multicover.8 versions - Latest release: 11 months ago - 1 dependent repositories - 16 downloads last month - 3 stars on GitHub - 1 maintainer
beaconet 1.0.9
A reference-free method for integration of multiple batches of scRNA-seq data.6 versions - Latest release: 3 months ago - 27 downloads last month - 0 stars on GitHub - 1 maintainer
dbaae 0.0.6
Adversarial Autoencoder with dynamic batching package1 version - Latest release: 3 months ago - 11 downloads last month - 0 stars on GitHub - 1 maintainer
sceleto 0.9.8
Tool to aid in single cell analysis (temporary description)10 versions - Latest release: almost 3 years ago - 1 dependent repositories - 65 downloads last month - 1 maintainer
scspatial 0.1.2
Package used to analyse spatial transcriptomics data with build in segmentation and information t...3 versions - Latest release: almost 2 years ago - 1 dependent repositories - 27 downloads last month - 8 stars on GitHub - 1 maintainer
cello-classify 2.1.1
CellO7 versions - Latest release: 11 months ago - 2 dependent repositories - 48 downloads last month - 60 stars on GitHub - 1 maintainer
step-kit 0.2.2
STEP, an acronym for Spatial Transcriptomics Embedding Procedure, is a deep learning-based tool f...4 versions - Latest release: about 1 month ago - 134 downloads last month - 3 stars on GitHub - 1 maintainer
driver2comm 0.0.1
A computational framework for associating cancer cell-intrinsic driver genes with -extrinsic cell...1 version - Latest release: about 1 month ago - 55 downloads last month - 1 maintainer
scprel 1.1.11
Single-cell data preprocessing for multiple samples.16 versions - Latest release: 7 months ago - 78 downloads last month - 1 maintainer
cellbender 0.3.0
A software package for eliminating technical artifacts from high-throughput single-cell RNA seque...4 versions - Latest release: 10 months ago - 1.04 thousand downloads last month - 262 stars on GitHub - 1 maintainer
deepimpute 1.2
scRNA-seq imputation2 versions - Latest release: about 4 years ago - 1 dependent repositories - 34 downloads last month - 1 maintainer
gene-trajectory 1.0.1
Compute gene trajectories9 versions - Latest release: about 1 month ago - 376 downloads last month - 9 stars on GitHub - 1 maintainer
respan 0.1.0
A light structured residual autoencoder and mutual nearest neighbor paring guided adversarial net...1 version - Latest release: about 2 years ago - 1 dependent repositories - 16 downloads last month - 13 stars on GitHub - 1 maintainer
db-aae 0.0.1 removed
Adversarial Autoencoder with dynamic batching package1 version - Latest release: 4 months ago - 0 stars on GitHub - 1 maintainer
nico-sc-sp 0.1.0
This package finds covariation patterns between interacted niche cell types from single-cell reso...10 versions - Latest release: 6 months ago - 76 downloads last month - 24 stars on GitHub - 1 maintainer
omicverse 1.5.9
OmicVerse: A single pipeline for exploring the entire transcriptome universe32 versions - Latest release: 28 days ago - 1 dependent repositories - 974 downloads last month - 133 stars on GitHub - 1 maintainer
eeisp 0.5.0
Identify gene pairs that are codependent and mutually exclusive from single-cell RNA-seq data.5 versions - Latest release: about 1 year ago - 1 dependent repositories - 44 downloads last month - 0 stars on GitHub - 1 maintainer
cellregmap 0.0.3
A linear mixed model framework to map multivariate context-specific eQTL using single-cell RNA-se...2 versions - Latest release: over 2 years ago - 1 dependent repositories - 32 downloads last month - 18 stars on GitHub - 2 maintainers
celerypy 1.2.1
Leverage spatial transcriptomics data to recover cell locations in single-cell RNA RNA-seq10 versions - Latest release: about 2 months ago - 170 downloads last month - 21 stars on GitHub - 1 maintainer
celloracle 0.18.0
in silico gene perturbation analysis and GRN analysis with single cell data20 versions - Latest release: 2 months ago - 1 dependent repositories - 757 downloads last month - 274 stars on GitHub - 1 maintainer
Related Keywords
single-cell
5
single cell
3
spatial transcriptomics
3
bioinformatics
3
python
2
pypi
2
python single cell
2
Adversarial Autoencoder
2
DB-AAE
2
scrna-seq
2
sceleto
2
imputation
2
limix
1
seqFISH
1
MERFISH
1
scRNAseq
1
gene perturbation
1
single-cell RNA sequencing
1
niche
1
neural network
1
batch effect correction
1
GAN
1
Gene trajectory
1
Deep Learning
1
Neural network
1
samples concatenation
1
single-cell multiple samples
1
single-cell data preparation
1
single-cell quality control
1
jupyter notebook
1
eqtl
1
cellregmap
1
context-specific regulation
1
eQTL
1
eeisp
1
omics
1
bulk-rna-seq
1
sc-eqtl
1
RNA-seq
1
deep-learning
1
non-negative-matrix-factorization
1
multi-omic-integration
1
structlmm
1
CeLEry
1
GRN
1
simulation
1
niche covariation
1
nico
1
STARmap
1
spatial
1
reference-free
1
multiple sources
1
batch effect
1
set-cover
1
genes
1
biomarker-discovery
1
multicover
1
multiset
1
cover
1
set
1
phenotype
1
marker
1
biomarker
1
scanpy
1
data IO
1
hdf5
1
discriminative
1
stacked autoencoder
1
tumor microenvironment
1
cancer driver gene
1
cell-cell communication
1
STEP
1
step
1
SRT
1
deep learning
1
single-cell RNA-seq
1
single-cell-rna-seq
1
rna-seq
1
ontologies
1
machine-learning
1
cell-type-classification
1
cell-biology
1
computational-biology
1
gene-expression
1
cell-ontology
1
cell-type
1
transcriptomics
1