Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "crispr" keyword
mgsurve 1.2.4
MGSurvE74 versions - Latest release: 9 months ago - 1 dependent repositories - 143 downloads last month - 1 stars on GitHub - 1 maintainer
datadraw 0.7.1
Library to produce many kinds of automated, presentable, data-driven 2-D plots, charts, graphs in...2 versions - Latest release: about 1 year ago - 15 downloads last month - 1 maintainer
berets 0.1.2
Tools for analyzing CRISPR data with REPorter edits11 versions - Latest release: over 1 year ago - 1 dependent package - 70 downloads last month - 7 stars on GitHub - 1 maintainer
crispr-bean 1.2.2
Base Editor screen analysis [Bayesian Estimation of variant effect] with guide Activity Normaliza...11 versions - Latest release: about 1 month ago - 1 dependent repositories - 267 downloads last month - 7 stars on GitHub - 1 maintainer
vintools 0.0.55
vintools - Michael Vinyard's utilities.23 versions - Latest release: over 2 years ago - 1 dependent repositories - 101 downloads last month - 2 stars on GitHub - 1 maintainer
crisprep 0.0.1
Tools for analyzing CRISPR data with REPorter edits1 version - Latest release: over 2 years ago - 6 downloads last month - 7 stars on GitHub - 1 maintainer
monet-mgdrive 0.5.6
MoNeT python package for MGDrivE data analysis74 versions - Latest release: over 4 years ago - 1 dependent repositories - 222 downloads last month - 0 stars on GitHub - 1 maintainer
pool-sharq 0.0.12
pool-sharq: python interface for Broad Institute GPP's poolq software.4 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 150 downloads last month - 0 stars on GitHub - 1 maintainer
synthego-ice 1.2.0
Synthego - Inference of CRISPR Edits (ICE)4 versions - Latest release: over 4 years ago - 1 dependent repositories - 44 downloads last month - 59 stars on GitHub - 1 maintainer
genet 0.15.1
GenET: Genome Editing Toolkit50 versions - Latest release: about 1 month ago - 1 dependent repositories - 185 downloads last month - 11 stars on GitHub - 1 maintainer
biodive 0.1.2
Discovery of k-mer sequences associated with high rates of sequence diversification.4 versions - Latest release: almost 2 years ago - 8 downloads last month - 5 stars on GitHub - 1 maintainer
screenpro2 0.3.0
Flexible analysis of high-content CRISPR screening20 versions - Latest release: 29 days ago - 522 downloads last month - 7 stars on GitHub - 1 maintainer
ogilo-array 0.0.2
Automated construction of oligo library sequences for oligo array synthesis.2 versions - Latest release: 12 months ago - 11 downloads last month - 0 stars on GitHub - 1 maintainer
cstb-core 2.2.1
Utility function for io and word searching and indexing7 versions - Latest release: almost 4 years ago - 39 downloads last month - 0 stars on GitHub - 2 maintainers
pycroquet 1.6.0
python Crispr Read to Oligo QUantification Enhancement Tool10 versions - Latest release: about 2 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
crispresso 1.0.13
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from deep sequencing data11 versions - Latest release: almost 6 years ago - 1 dependent repositories - 57 downloads last month - 129 stars on GitHub - 1 maintainer
cy 0.5.8
Modelling CRISPR dropout data42 versions - Latest release: about 3 years ago - 4 dependent repositories - 328 downloads last month - 9 stars on GitHub - 1 maintainer
crispio 0.0.2
Designing CRISPR-Cas guide RNAs in bacteria.4 versions - Latest release: 3 months ago - 27 downloads last month - 0 stars on GitHub - 1 maintainer
salmonella_crispr_typing 1.0.1
This tool gets a CRISPR profile by identifying the presence of known spacers and direct repeats (...2 versions - Latest release: over 6 years ago - 11 downloads last month - 1 maintainer
fba 0.0.13
Tools for single-cell feature barcoding analysis11 versions - Latest release: over 1 year ago - 1 dependent repositories - 95 downloads last month - 4 stars on GitHub - 1 maintainer
pygas 1.0.4
python Guide aligned Sequences2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 12 downloads last month - 1 stars on GitHub - 1 maintainer
indel-mapper 0.1
A Python project to visualize indels near Cas9 cutsites.1 version - Latest release: almost 7 years ago - 1 dependent repositories - 8 downloads last month - 2 stars on GitHub - 1 maintainer
beditor 2.0.1
A computational workflow for designing libraries of guide RNAs for CRISPR base editing20 versions - Latest release: 4 months ago - 1 dependent repositories - 86 downloads last month - 14 stars on GitHub - 1 maintainer
cctyper 1.8.0
CRISPRCasTyper: Automatic detection and subtyping of CRISPR-Cas operons34 versions - Latest release: over 1 year ago - 1 dependent repositories - 249 downloads last month - 85 stars on GitHub - 1 maintainer
pydgmfinder 0.0.0 removed
Package to detect diversity generating mechanisms from sequencing data alone.1 version - Latest release: over 2 years ago
Related Keywords
bioinformatics
9
python
9
crispr-cas9
4
crispr-analysis
4
base-editing
4
biology
3
CRISPR
3
bayesian-network
3
count-data-modeling
3
ngs-sequencing-data
3
probabilistic-programming-language
3
screen
3
science
2
cas9
2
guide-rna-library
2
genomics
2
genome
2
single-cell
2
dengue
2
gene-drive
2
mosquito
2
malaria
2
oligos
1
oligonucleotides
1
sequencing
1
assay
1
sequencing-data
1
phenotypes
1
perturbation-screen
1
ngs-analysis
1
bar graph
1
crispr-cas12
1
mobile-genetic-elements
1
microbiome-analysis
1
microbial-genomics
1
analysis
1
deep-learning
1
genetics
1
genome-editing
1
diversity-generating mechanisms
1
mobile genetic elements
1
horizontal gene transfer
1
salmonella
1
fasta
1
cell-hashing
1
cell-partitioning
1
cellplex
1
cite-seq
1
eccite-seq
1
feature-barcodes
1
multi-seq
1
phage-atac
1
targeted-transcripts
1
alignment
1
indels
1
genome-wide-targeted-mutagenesis
1
cas
1
crispr-cas
1
dgr
1
crispr-design
1
molecular-biology
1
oligo-design
1
oligonucleotide
1
synthetic-biology
1
webserver
1
word encoding
1
quantification
1
amplicon
1
docker
1
ngs
1
gaussian
1
sklearn
1
bacteria
1
bacterial-genomes
1
crispri
1
fitness
1
vector graphics
1
image annotation
1
tooltip
1
automatic axis
1
automatic ranging
1
log10
1
log
1
datetime
1
times
1
dates
1
categorical
1
django
1
flask
1
legend
1
axis
1
SVG
1
2-D
1
web
1
dynamic
1
graphing
1
graph
1
charing
1
chart
1
plotting
1