Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "sequence-analysis" keyword
peptides 0.3.2
Physicochemical properties, indices and descriptors for amino-acid sequences.6 versions - Latest release: about 1 year ago - 1 dependent repositories - 518 downloads last month - 54 stars on GitHub - 1 maintainer
lightmotif 0.6.0
PyO3 bindings and Python interface to lightmotif, a library for platform-accelerated biological m...7 versions - Latest release: 6 months ago - 763 downloads last month - 36 stars on GitHub - 1 maintainer
seqsearch 2.2.1
Sequence similarity searches (e.g. BLAST) made easy.22 versions - Latest release: 9 months ago - 1 dependent package - 4 dependent repositories - 53 downloads last month - 1 stars on GitHub - 1 maintainer
vfind 0.1.0
A simple variant finder for NGS data2 versions - Latest release: about 2 months ago - 84 downloads last month - 1 stars on GitHub - 1 maintainer
pymsaviz 0.4.2
MSA visualization python package for sequence analysis8 versions - Latest release: 9 months ago - 2 dependent packages - 468 downloads last month - 70 stars on GitHub - 1 maintainer
midsv 0.11.0
Python module to convert SAM to MIDSV format.23 versions - Latest release: 5 months ago - 1 dependent package - 1 dependent repositories - 475 downloads last month - 2 stars on GitHub - 1 maintainer
seqann 1.0.0
Sequence Annotation44 versions - Latest release: over 5 years ago - 1 dependent package - 1 dependent repositories - 203 downloads last month - 5 stars on GitHub - 1 maintainer
seq-ann 1.1.0
Sequence Annotation3 versions - Latest release: over 4 years ago - 1 dependent package - 4 dependent repositories - 45 downloads last month - 5 stars on GitHub - 1 maintainer
Top 2.2% on pypi.org
53 versions - Latest release: 2 months ago - 18 dependent packages - 22 dependent repositories - 17.6 thousand downloads last month - 570 stars on GitHub - 2 maintainers
biotite 0.40.0
A comprehensive library for computational molecular biology53 versions - Latest release: 2 months ago - 18 dependent packages - 22 dependent repositories - 17.6 thousand downloads last month - 570 stars on GitHub - 2 maintainers
py-cdhit 0.12.0
A Python interface for CD-HIT package.13 versions - Latest release: 4 months ago - 2 dependent packages - 167 downloads last month - 2 stars on GitHub - 1 maintainer
pymemesuite 0.1.0a2
Cython bindings and Python interface to the MEME suite.2 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 205 downloads last month - 10 stars on GitHub - 1 maintainer
smof 2.22.2
UNIX-style utilities for FASTA file exploration12 versions - Latest release: almost 2 years ago - 2 dependent repositories - 59 downloads last month - 15 stars on GitHub - 1 maintainer
gramep 0.1.0
GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle1 version - Latest release: about 1 month ago - 142 downloads last month - 0 stars on GitHub - 1 maintainer
geneblocks 1.2.3
Library to compare DNA sequences (diff, common blocks, etc.)18 versions - Latest release: about 2 years ago - 2 dependent packages - 1 dependent repositories - 232 downloads last month - 36 stars on GitHub - 1 maintainer
string-kernels 1.1.2
Polynomial String Kernel and linear time String Kernel. Supports multithreading and is compatible...8 versions - Latest release: almost 2 years ago - 1 dependent repositories - 150 downloads last month - 5 stars on GitHub - 1 maintainer
Top 5.2% on pypi.org
59 versions - Latest release: about 2 months ago - 18 dependent packages - 6 dependent repositories - 12.5 thousand downloads last month - 110 stars on GitHub - 1 maintainer
pyhmmer 0.10.12
Cython bindings and Python interface to HMMER3.59 versions - Latest release: about 2 months ago - 18 dependent packages - 6 dependent repositories - 12.5 thousand downloads last month - 110 stars on GitHub - 1 maintainer
pyhmmer-arm 0.7.5
Cython bindings and Python interface to HMMER3.1 version - Latest release: about 1 year ago - 1 dependent package - 9 downloads last month - 110 stars on GitHub - 1 maintainer
pxblat 1.2.1
A native python binding for blat suite26 versions - Latest release: 25 days ago - 461 downloads last month - 10 stars on GitHub - 1 maintainer
ilearnplus 1.5
A comprehensive and automated machine-learning platform for nucleic acid and protein sequence ana...4 versions - Latest release: 3 months ago - 1 dependent repositories - 176 downloads last month - 81 stars on GitHub - 1 maintainer
phenotrex 0.6.0
Microbial Phenotype Prediction4 versions - Latest release: over 2 years ago - 1 dependent repositories - 54 downloads last month - 8 stars on GitHub - 2 maintainers
gfapy 1.2.3
Library for handling data in the GFA1 and GFA2 formats16 versions - Latest release: over 2 years ago - 6 dependent repositories - 297 downloads last month - 62 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
18
sequence
6
genomics
6
python
5
machine-learning
3
ngs
3
cython-library
3
hla
2
gfe
2
seqann
2
hla-typing
2
python-library
2
python-bindings
2
hmmer3
2
hmmer
2
hidden-markov-model
2
sequence-motif
2
pfam
2
HMM
2
profile
2
motif
2
cstag
1
algorithms
1
kernelsvm
1
multithreading
1
pybind11
1
cpp
1
c
1
alignment
1
blat
1
sequence aligner
1
gfa
1
graphs
1
assembly
1
GFA
1
sequences
1
xgboost
1
xgb
1
svm
1
phenotype-prediction
1
metagenomics
1
ecological-roles
1
data-driven
1
comparative-genomics
1
phenotrex
1
prediction
1
feature-selection
1
deep-learning
1
biomedical-data-analytics
1
bioinformatics-tool
1
automated-modelling
1
ilearnplus
1
multiple-sequence-alignment
1
msa
1
sequence-alignment
1
visualization
1
matplotlib
1
variant finding
1
NGS
1
sequence analysis
1
database-management
1
blast-search
1
simd
1
rust-library
1
matrix
1
pssm
1
qsar-models
1
pure-python
1
qsar
1
peptide
1
protein
1
synthetic-biology
1
diff
1
blocks
1
DNA
1
snps
1
python-bioinformatics
1
maximum-entropy
1
genome-analysis
1
biological-sequence-analysis
1
fasta
1
biology
1
meme-suite
1
logo
1
enrichment
1
tool
1
package
1
structural-biology
1
pdb-files
1
computational-biology
1
long-read-sequencing
1