Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "methylation" keyword
logloss-beraf 0.7
A tool for costructing a limited sized diagnostic panels based on methylation data3 versions - Latest release: over 6 years ago - 1 dependent repositories - 12 downloads last month - 1 maintainer
methylbert 0.0.2
A Transformer-based model for read-level DNA methylation pattern identification and tumour deconv...3 versions - Latest release: 3 months ago - 23 downloads last month - 9 stars on GitHub - 1 maintainer
methylize 1.1.1 💰
EWAS Analysis software for Illumina methylation arrays12 versions - Latest release: almost 2 years ago - 1 dependent repositories - 220 downloads last month - 12 stars on GitHub - 1 maintainer
pyncbi 0.1.6
Simple API for Python Integration with NCBI9 versions - Latest release: almost 2 years ago - 1 dependent repositories - 19 downloads last month - 4 stars on GitHub - 1 maintainer
bam2tensor 1.0.1
Bam2Tensor10 versions - Latest release: 4 months ago - 77 downloads last month - 0 stars on GitHub - 1 maintainer
methpype 1.0.6 💰
Python-based Illumina methylation array processing and analysis software composite package6 versions - Latest release: over 3 years ago - 1 dependent repositories - 64 downloads last month - 33 stars on GitHub - 1 maintainer
bsxplorer 1.0.0rc5
Analytical framework for BS-seq data comparison and visualization5 versions - Latest release: 4 months ago - 34 downloads last month - 4 stars on GitHub - 1 maintainer
bismarkplot 1.3.2
Analytical framework for BS-seq data comparison and visualization17 versions - Latest release: 7 months ago - 42 downloads last month - 4 stars on GitHub - 1 maintainer
deepsignal-plant 0.1.6
A deep-learning method for detecting DNA methylation state from Oxford Nanopore sequencing reads ...7 versions - Latest release: almost 2 years ago - 1 dependent repositories - 31 downloads last month - 51 stars on GitHub - 1 maintainer
methylink 0.6.0
methylink is a tool to link methylation tags between SAM/BAM files.6 versions - Latest release: 7 months ago - 29 downloads last month - 1 stars on GitHub - 1 maintainer
scbs 0.6.8
command line tool for the analysis of single-cell bisulfite-sequencing data13 versions - Latest release: 2 months ago - 43 downloads last month - 10 stars on GitHub - 1 maintainer
methylsuite 1.4.0 💰
Python-based Illumina methylation array processing and analysis software composite package6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 105 downloads last month - 32 stars on GitHub - 1 maintainer
methylcheck 0.8.5 💰
Quality Control (QC), Visualization/plotting, and postprocessing software for Illumina methylatio...32 versions - Latest release: almost 2 years ago - 2 dependent packages - 1 dependent repositories - 365 downloads last month - 9 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
14 versions - Latest release: 6 months ago - 3 dependent repositories - 543 downloads last month - 139 stars on GitHub - 1 maintainer
ont-remora 3.1.0
Nanopore methylation/modified base calling detached from basecalling14 versions - Latest release: 6 months ago - 3 dependent repositories - 543 downloads last month - 139 stars on GitHub - 1 maintainer
methylpurify 2.0-20141116
Methylation subclone detection4 versions - Latest release: over 9 years ago - 1 dependent repositories - 22 downloads last month - 1 maintainer
methtuple 1.8.0
methtuple4 versions - Latest release: about 2 years ago - 3 dependent repositories - 66 downloads last month - 12 stars on GitHub - 1 maintainer
deepcpg 1.0.7
Deep learning for predicting CpG methylation8 versions - Latest release: over 5 years ago - 1 dependent repositories - 163 downloads last month - 141 stars on GitHub - 1 maintainer
aric 1.0.1
ARIC: Accurate and robust inference of cell type proportions from bulk gene expression or DNA met...4 versions - Latest release: 3 months ago - 31 downloads last month - 1 stars on GitHub - 1 maintainer
deepsignal2 0.1.3
A deep-learning method for detecting DNA methylation state from Oxford Nanopore sequencing reads4 versions - Latest release: almost 2 years ago - 1 dependent repositories - 26 downloads last month - 24 stars on GitHub - 1 maintainer
methylmap 0.4.6
Plotting tool for population scale nucleotide modifications.8 versions - Latest release: 8 months ago - 32 downloads last month - 17 stars on GitHub - 1 maintainer
methscan 1.0.0
command line tool for the analysis of single-cell bisulfite-sequencing data1 version - Latest release: 2 months ago - 17 downloads last month - 2 stars on GitHub - 1 maintainer
bsbolt 1.6.0
Bisulfite Sequencing Processing Platform27 versions - Latest release: about 1 year ago - 1 dependent repositories - 584 downloads last month - 21 stars on GitHub - 1 maintainer
nanomix 0.2.0
Methods for cell type deconvolution from Oxford Nanopore methylation calling3 versions - Latest release: about 1 year ago - 42 downloads last month - 10 stars on GitHub - 1 maintainer
ccsmeth 0.5.0
Detecting DNA methylation from PacBio CCS reads11 versions - Latest release: 4 months ago - 1 dependent repositories - 80 downloads last month - 60 stars on GitHub - 1 maintainer
mbin 1.1.1
mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads3 versions - Latest release: about 6 years ago - 1 dependent repositories - 23 downloads last month - 25 stars on GitHub - 1 maintainer
deepsignal 0.2.0
A deep-learning method for detecting DNA methylation state from Oxford Nanopore sequencing reads11 versions - Latest release: about 2 years ago - 1 dependent repositories - 40 downloads last month - 105 stars on GitHub - 1 maintainer
cemba-data 1.6.9
Pipelines for single nucleus methylome and multi-omic dataset.55 versions - Latest release: about 1 year ago - 1 dependent repositories - 151 downloads last month - 14 stars on GitHub - 1 maintainer
bpforms 0.0.16
Unambiguous representation of modified DNA, RNA, and proteins12 versions - Latest release: almost 4 years ago - 7 dependent repositories - 116 downloads last month - 6 stars on GitHub - 2 maintainers
pyllelic 0.4.8
Analysis of allele-specific methylation in bisulfite DNA sequencing.24 versions - Latest release: 9 months ago - 1 dependent repositories - 211 downloads last month - 6 stars on GitHub - 1 maintainer
methylprep 1.7.1 💰
Python-based Illumina methylation array preprocessing software54 versions - Latest release: almost 2 years ago - 2 dependent repositories - 902 downloads last month - 32 stars on GitHub - 1 maintainer
astair 3.3.2
A tool for the analysis of bisulfite-free and base-resolution sequencing data generated with TET ...9 versions - Latest release: almost 4 years ago - 118 downloads last month - 1 maintainer
Related Keywords
epigenetics
10
bioinformatics
6
nanopore
6
dna
6
data
6
processing
5
illumina
5
biology
4
neural network
4
bismark
3
deconvolution
3
sequencing
3
single-cell
3
plot
3
plotting
2
methylation-analysis
2
bs-seq
2
single cell bisulfite sequencing
2
single cell
2
genomics
2
visualization
2
bisulfite
2
nanopore-sequencing
2
learning
2
RNA
1
RRBS
1
DNA
1
snmct-seq
1
snmc-seq2
1
snmc-seq
1
pipeline
1
tensorflow
1
metagenomic
1
binning
1
mbin
1
pacbio
1
dna-alignment
1
bisulfite-sequencing
1
WGBS
1
modification
1
caller
1
cytosine
1
taps
1
TAPS
1
python3
1
academia
1
DNA sequencing
1
rna
1
post-translational-modification
1
post-transcriptional-regulation
1
dna-damage
1
crosslinks
1
phosphorylation
1
proteoform
1
post-translational modification
1
post-transcriptional modification
1
protein
1
rna-seq
1
epigenetic-data
1
ncbi
1
analytics
1
data database
1
api
1
python
1
parallelization
1
life
1
analysis
1
tumour
1
language-model
1
bert
1
panel
1
diagnostic
1
machine
1
model
1
ARIC
1
pip
1
deeplearning
1
deep-neural-networks
1
Deep
1
cancer
1
basecalling
1
single-cell-rna-seq
1
single-cell-methylation
1
dna-methylation-data
1
dna-methylation
1
cli
1
pytorch
1
plant
1
machine-learning
1
database
1