Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
cran.r-project.org "bioinformatics" keyword
Top 8.9% on cran.r-project.org
18 versions - Latest release: about 1 month ago - 1 dependent package - 17 dependent repositories - 8.24 thousand downloads last month - 292 stars on GitHub - 1 maintainer
Signac 1.13.0
Analysis of Single-Cell Chromatin Data18 versions - Latest release: about 1 month ago - 1 dependent package - 17 dependent repositories - 8.24 thousand downloads last month - 292 stars on GitHub - 1 maintainer
immunarch 0.9.1
Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires10 versions - Latest release: 2 months ago - 1.26 thousand downloads last month - 282 stars on GitHub - 1 maintainer
Top 10.0% on cran.r-project.org
23 versions - Latest release: 5 months ago - 5 dependent packages - 14 dependent repositories - 1.17 thousand downloads last month - 73 stars on GitHub - 1 maintainer
Peptides 2.4.6
Calculate Indices and Theoretical Physicochemical Properties of Protein Sequences23 versions - Latest release: 5 months ago - 5 dependent packages - 14 dependent repositories - 1.17 thousand downloads last month - 73 stars on GitHub - 1 maintainer
Top 9.2% on cran.r-project.org
15 versions - Latest release: about 1 year ago - 3 dependent packages - 4 dependent repositories - 1.07 thousand downloads last month - 177 stars on GitHub - 1 maintainer
bigsnpr 1.12.2
Analysis of Massive SNP Arrays15 versions - Latest release: about 1 year ago - 3 dependent packages - 4 dependent repositories - 1.07 thousand downloads last month - 177 stars on GitHub - 1 maintainer
Top 7.9% on cran.r-project.org
43 versions - Latest release: 7 months ago - 5 dependent packages - 6 dependent repositories - 977 downloads last month - 286 stars on GitHub - 1 maintainer
canvasXpress 1.46.9
Visualization Package for CanvasXpress in R43 versions - Latest release: 7 months ago - 5 dependent packages - 6 dependent repositories - 977 downloads last month - 286 stars on GitHub - 1 maintainer
sigminer 2.3.1
Extract, Analyze and Visualize Mutational Signatures for Genomic Variations34 versions - Latest release: 8 days ago - 1 dependent repositories - 841 downloads last month - 134 stars on GitHub - 1 maintainer
UCSCXenaTools 1.4.8
Download and Explore Datasets from UCSC Xena Data Hubs35 versions - Latest release: almost 2 years ago - 2 dependent packages - 6 dependent repositories - 766 downloads last month - 92 stars on GitHub - 1 maintainer
TreeSearch 1.5.0
Phylogenetic Analysis with Discrete Character Data24 versions - Latest release: about 2 months ago - 3 dependent packages - 4 dependent repositories - 659 downloads last month - 5 stars on GitHub - 1 maintainer
rbioapi 0.8.1
User-Friendly R Interface to Biologic Web Services' API8 versions - Latest release: about 2 months ago - 1 dependent repositories - 643 downloads last month - 17 stars on GitHub - 1 maintainer
homologene 1.1.68
Quick Access to Homologene and Gene Annotation Updates2 versions - Latest release: over 6 years ago - 3 dependent repositories - 547 downloads last month - 39 stars on GitHub - 1 maintainer
SPUTNIK 1.4.2
Spatially Automatic Denoising for Imaging Mass Spectrometry Toolkit19 versions - Latest release: about 1 month ago - 521 downloads last month - 4 stars on GitHub - 1 maintainer
BioCircos 0.3.4
Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js'3 versions - Latest release: about 5 years ago - 2 dependent repositories - 502 downloads last month - 36 stars on GitHub - 1 maintainer
Quartet 1.2.6
Comparison of Phylogenetic Trees Using Quartet and Split Measures10 versions - Latest release: 3 months ago - 3 dependent packages - 5 dependent repositories - 440 downloads last month - 8 stars on GitHub - 1 maintainer
epigraphdb 0.2.3
Interface Package for the 'EpiGraphDB' Platform3 versions - Latest release: over 2 years ago - 1 dependent repositories - 439 downloads last month - 24 stars on GitHub - 1 maintainer
polyRAD 2.0.0
Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids9 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 385 downloads last month - 24 stars on GitHub - 1 maintainer
admixr 0.9.1
An Interface for Running 'ADMIXTOOLS' Analyses1 version - Latest release: almost 4 years ago - 1 dependent package - 1 dependent repositories - 372 downloads last month - 26 stars on GitHub - 1 maintainer
liger 2.0.1
Lightweight Iterative Geneset Enrichment4 versions - Latest release: over 3 years ago - 4 dependent repositories - 372 downloads last month - 55 stars on GitHub - 1 maintainer
vcfppR 0.4.5
Rapid Manipulation of the Variant Call Format (VCF)5 versions - Latest release: about 1 month ago - 322 downloads last month - 8 stars on GitHub - 1 maintainer
slurmR 0.5-4
A Lightweight Wrapper for 'Slurm'6 versions - Latest release: 9 months ago - 2 dependent repositories - 320 downloads last month - 53 stars on GitHub - 1 maintainer
OmicNavigator 1.13.13
Open-Source Software for 'Omic' Data Analysis and Visualization6 versions - Latest release: 9 months ago - 316 downloads last month - 21 stars on GitHub - 1 maintainer
ClustAssess 0.3.0
Tools for Assessing Clustering3 versions - Latest release: over 2 years ago - 311 downloads last month - 18 stars on GitHub - 1 maintainer
baseq 0.1.4
Basic Sequence Processing Tool for Biological Data4 versions - Latest release: about 1 year ago - 303 downloads last month - 0 stars on GitHub - 1 maintainer
Canek 0.2.5
Batch Correction of Single Cell Transcriptome Data6 versions - Latest release: 5 months ago - 1 dependent repositories - 300 downloads last month - 4 stars on GitHub - 1 maintainer
RDML 1.0
Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files10 versions - Latest release: almost 5 years ago - 3 dependent packages - 4 dependent repositories - 290 downloads last month - 20 stars on GitHub - 1 maintainer
g3viz 1.1.5 removed
Interactively Visualize Genetic Mutation Data using a Lollipop-Diagram10 versions - Latest release: over 1 year ago - 1 dependent repositories - 288 downloads last month - 29 stars on GitHub - 1 maintainer
pepr 0.5.0
Reading Portable Encapsulated Projects3 versions - Latest release: 6 months ago - 5 dependent repositories - 287 downloads last month - 3 stars on GitHub - 1 maintainer
singleCellHaystack 1.0.2
A Universal Differential Expression Prediction Tool for Single-Cell and Spatial Genomics Data5 versions - Latest release: 4 months ago - 1 dependent repositories - 286 downloads last month - 70 stars on GitHub - 1 maintainer
flowr 0.9.11
Streamlining Design and Deployment of Complex Workflows7 versions - Latest release: about 3 years ago - 1 dependent repositories - 280 downloads last month - 83 stars on GitHub - 1 maintainer
volcano3D 2.0.9
3D Volcano Plots and Polar Plots for Three-Class Data7 versions - Latest release: about 1 year ago - 259 downloads last month - 31 stars on GitHub - 1 maintainer
pagoo 0.3.17
Analyze Bacterial Pangenomes in R with 'Pagoo'5 versions - Latest release: over 1 year ago - 1 dependent repositories - 255 downloads last month - 23 stars on GitHub - 1 maintainer
biocompute 1.1.1
Create and Manipulate BioCompute Objects5 versions - Latest release: about 2 years ago - 255 downloads last month - 3 stars on GitHub - 1 maintainer
grex 1.9
Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data8 versions - Latest release: about 5 years ago - 1 dependent repositories - 254 downloads last month - 8 stars on GitHub - 1 maintainer
TOmicsVis 2.0.0
Transcriptome Visualization Process Scheme3 versions - Latest release: 9 months ago - 247 downloads last month - 56 stars on GitHub - 1 maintainer
shinyExprPortal 1.1.0
A Configurable 'shiny' Portal for Sharing Analysis of Molecular Expression Data3 versions - Latest release: 3 months ago - 247 downloads last month - 4 stars on GitHub - 1 maintainer
TidyMultiqc 1.0.3
Converts 'MultiQC' Reports into Tidy Data Frames4 versions - Latest release: over 1 year ago - 232 downloads last month - 11 stars on GitHub - 1 maintainer
CancerGram 1.0.0
Prediction of Anticancer Peptides1 version - Latest release: over 3 years ago - 224 downloads last month - 4 stars on GitHub - 1 maintainer
LPWC 1.0.0
Lag Penalized Weighted Correlation for Time Series Clustering5 versions - Latest release: over 4 years ago - 222 downloads last month - 20 stars on GitHub - 1 maintainer
MetaComp 1.1.2
EDGE Taxonomy Assignments Visualization3 versions - Latest release: almost 6 years ago - 219 downloads last month - 3 stars on GitHub - 1 maintainer
echo.find 4.0.1
Finding Rhythms Using Extended Circadian Harmonic Oscillators (ECHO)9 versions - Latest release: almost 4 years ago - 215 downloads last month - 11 stars on GitHub - 1 maintainer
tidysq 1.1.3
Tidy Processing and Analysis of Biological Sequences3 versions - Latest release: over 2 years ago - 203 downloads last month - 34 stars on GitHub - 1 maintainer
cubar 0.5.0
Codon Usage Bias Analysis3 versions - Latest release: 4 months ago - 192 downloads last month - 5 stars on GitHub - 1 maintainer
bodenmiller 0.1.1
Profiling of Peripheral Blood Mononuclear Cells using CyTOF2 versions - Latest release: about 3 years ago - 3 dependent packages - 4 dependent repositories - 192 downloads last month - 2 stars on GitHub - 1 maintainer
kgp 1.1.1
1000 Genomes Project Metadata3 versions - Latest release: over 1 year ago - 187 downloads last month - 19 stars on GitHub - 1 maintainer
macrosyntR 0.3.3
Draw Ordered Oxford Grids and Chord Diagrams3 versions - Latest release: 6 months ago - 182 downloads last month - 10 stars on GitHub - 1 maintainer
freqpcr 0.4.0
Estimates Allele Frequency on qPCR DeltaDeltaCq from Bulk Samples1 version - Latest release: over 2 years ago - 174 downloads last month - 1 stars on GitHub - 1 maintainer
scINSIGHT 0.1.4
Interpretation of Heterogeneous Single-Cell Gene Expression Data5 versions - Latest release: almost 2 years ago - 164 downloads last month - 19 stars on GitHub - 1 maintainer
ipADMIXTURE 0.1.0
Iterative Pruning Population Admixture Inference Framework1 version - Latest release: about 4 years ago - 140 downloads last month - 4 stars on GitHub - 1 maintainer
REPTILE 1.0
Regulatory DNA Element Prediction1 version - Latest release: almost 8 years ago - 133 downloads last month - 28 stars on GitHub - 1 maintainer
goat 1.0
Gene Set Analysis Using the Gene Set Ordinal Association Test1 version - Latest release: 19 days ago - 9 downloads last month - 4 stars on GitHub - 1 maintainer
seqR 1.0.1 removed
Fast and Comprehensive K-Mer Counting Package2 versions - Latest release: over 2 years ago - 1 dependent repositories - 11 stars on GitHub
chromatographR 0.4.4 removed
Chromatographic Data Analysis Toolset3 versions - Latest release: over 1 year ago - 3 stars on GitHub
minval 0.8-2 removed
MINimal VALidation for Stoichiometric Reactions11 versions - Latest release: about 2 years ago - 1 dependent package - 2 dependent repositories - 3 stars on GitHub - 1 maintainer
glmmSeq 0.5.5
General Linear Mixed Models for Gene-Level Differential Expression6 versions - Latest release: over 1 year ago - 18 stars on GitHub - 1 maintainer
chatAI4R 0.2.10
Chat-Based Interactive Artificial Intelligence for R2 versions - Latest release: 8 months ago - 2 stars on GitHub - 1 maintainer
harrietr 0.2.3
Wrangle Phylogenetic Distance Matrices and Other Utilities2 versions - Latest release: over 6 years ago - 1 dependent repositories - 12 stars on GitHub - 1 maintainer
Related Keywords
r
19
cran
12
transcriptomics
7
rstats
7
r-package
6
genomics
6
single-cell
4
gene-expression
4
visualization
4
api-client
3
population-genetics
3
phylogenetics
3
omics
3
pcr
2
protein-sequences
2
pipeline
2
workflow
2
bioinformatics-tool
2
rna-seq
2
enrichment
2
sequencing
2
shiny
2
research-tool
2
machine-learning
2
clustering
2
metadata
2
rpackage
2
reproducible-research
2
k-mer
2
random-forests
1
peptide-identification
1
data-analysis
1
n-gram
1
time-series
1
anticancer-peptides
1
gtex
1
comparative-genomics
1
edge
1
heatmap
1
metagenomics
1
circadian
1
circadian-rhythm
1
circadian-rhythmicity
1
echo
1
extended-harmonic-oscillators
1
finding-rhythms
1
oscillators
1
proteomics
1
bioconductor
1
biological-sequences
1
fasta
1
evolution
1
qpcr
1
rdml
1
genomics-visualization
1
lollipop-plot
1
variants
1
visualize-mutation-data
1
cite-seq
1
pseudotime
1
scatac-seq
1
spatial-proteomics
1
spatial-transcriptomics
1
cloud
1
cluster
1
flowr
1
tsv
1
differential-expression
1
differential-expression-analysis
1
interactive
1
package
1
plotly
1
volcanoplots
1
microbial-genomics
1
pangenome
1
r6
1
biocompute
1
biocompute-objects
1
science-communication
1
sevenbridges
1
standardization
1
genotype-tissue-expression
1
open-data
1
metabolomics
1
hplv-uv
1
hplc-pda
1
hplc-dad
1
hplc
1
gc-fid
1
chromatography
1
cheminformatics
1
rcppparallel
1
rcpp
1
ngrams
1
ngram
1
kmers
1
kmer-frequency-count
1
kmer-counting
1
kmer
1
image-generation
1