Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
cran.r-project.org "transcriptomics" keyword
shinyExprPortal 1.1.0
A Configurable 'shiny' Portal for Sharing Analysis of Molecular Expression Data3 versions - Latest release: 3 months ago - 247 downloads last month - 4 stars on GitHub - 1 maintainer
Canek 0.2.5
Batch Correction of Single Cell Transcriptome Data6 versions - Latest release: 5 months ago - 1 dependent repositories - 300 downloads last month - 4 stars on GitHub - 1 maintainer
scCATCH 3.2.2
Single Cell Cluster-Based Annotation Toolkit for Cellular Heterogeneity5 versions - Latest release: about 1 year ago - 3 dependent repositories - 378 downloads last month - 201 stars on GitHub - 1 maintainer
glmmSeq 0.5.5
General Linear Mixed Models for Gene-Level Differential Expression6 versions - Latest release: over 1 year ago - 18 stars on GitHub - 1 maintainer
DIscBIO 1.2.2
A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics6 versions - Latest release: 6 months ago - 10 stars on GitHub - 1 maintainer
imsig 1.1.3
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours3 versions - Latest release: over 3 years ago - 173 downloads last month - 24 stars on GitHub - 1 maintainer
singleCellHaystack 1.0.2
A Universal Differential Expression Prediction Tool for Single-Cell and Spatial Genomics Data5 versions - Latest release: 4 months ago - 1 dependent repositories - 286 downloads last month - 70 stars on GitHub - 1 maintainer
volcano3D 2.0.9
3D Volcano Plots and Polar Plots for Three-Class Data7 versions - Latest release: almost 1 year ago - 259 downloads last month - 31 stars on GitHub - 1 maintainer
pagoda2 1.0.12
Single Cell Analysis and Differential Expression13 versions - Latest release: 3 months ago - 3 dependent packages - 12 dependent repositories - 817 downloads last month - 187 stars on GitHub - 1 maintainer
TOmicsVis 2.0.0
Transcriptome Visualization Process Scheme3 versions - Latest release: 9 months ago - 247 downloads last month - 56 stars on GitHub - 1 maintainer
echo.find 4.0.1
Finding Rhythms Using Extended Circadian Harmonic Oscillators (ECHO)9 versions - Latest release: almost 4 years ago - 215 downloads last month - 11 stars on GitHub - 1 maintainer
SeedMatchR 1.1.1 removed
Find Matches to Canonical SiRNA Seeds in Genomic Features2 versions - Latest release: 7 months ago - 118 downloads last month - 2 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
7
rna-seq
4
single-cell
3
r-package
2
r
2
single-cell-rna-seq
2
scrna-seq
2
gene-expression
2
omics
2
cran
2
bioinformatics-tool
1
visualization
1
pipeline
1
volcanoplots
1
plotly
1
package
1
interactive
1
differential-expression-analysis
1
differential-expression
1
data-analysis
1
circadian
1
circadian-rhythm
1
circadian-rhythmicity
1
echo
1
extended-harmonic-oscillators
1
finding-rhythms
1
oscillators
1
proteomics
1
deseq2-analysis
1
mirna
1
sirna
1
batch-effects
1
cell-markers
1
cluster-annotation
1
marker-genes
1
sequencing
1
seurat
1
transcriptome
1
differential-gene-expression
1
glmm
1
mixed-models
1
biomarker-discovery
1
jupyter-notebook
1
single-cell-analysis
1
cancer
1
deconvolution
1
immune
1
cite-seq
1
pseudotime
1
scatac-seq
1
spatial-proteomics
1
spatial-transcriptomics
1