Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
cran.r-project.org "single-cell" keyword
tidyseurat 0.8.0
Brings Seurat to the Tidyverse15 versions - Latest release: 4 months ago - 8 dependent repositories - 521 downloads last month - 138 stars on GitHub - 1 maintainer
numbat 1.4.0
Haplotype-Aware CNV Analysis from scRNA-Seq8 versions - Latest release: 2 months ago - 840 downloads last month - 150 stars on GitHub - 1 maintainer
APackOfTheClones 1.2.0
Visualization of Clonal Expansion for Single Cell Immune Profiles5 versions - Latest release: 20 days ago - 520 downloads last month - 13 stars on GitHub - 1 maintainer
Top 8.9% on cran.r-project.org
18 versions - Latest release: about 1 month ago - 1 dependent package - 17 dependent repositories - 8.95 thousand downloads last month - 290 stars on GitHub - 1 maintainer
Signac 1.13.0
Analysis of Single-Cell Chromatin Data18 versions - Latest release: about 1 month ago - 1 dependent package - 17 dependent repositories - 8.95 thousand downloads last month - 290 stars on GitHub - 1 maintainer
scCATCH 3.2.2
Single Cell Cluster-Based Annotation Toolkit for Cellular Heterogeneity5 versions - Latest release: about 1 year ago - 3 dependent repositories - 378 downloads last month - 201 stars on GitHub - 1 maintainer
pagoda2 1.0.12
Single Cell Analysis and Differential Expression13 versions - Latest release: 2 months ago - 3 dependent packages - 12 dependent repositories - 817 downloads last month - 187 stars on GitHub - 1 maintainer
dyngen 1.0.5
A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses7 versions - Latest release: over 1 year ago - 1 dependent repositories - 301 downloads last month - 68 stars on GitHub - 1 maintainer
scperturbR 0.1.0
E-Statistics for Seurat Objects1 version - Latest release: about 1 year ago - 147 downloads last month - 83 stars on GitHub - 1 maintainer
SCdeconR 1.0.0
Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference1 version - Latest release: about 1 month ago - 224 downloads last month - 1 stars on GitHub - 1 maintainer
scistreer 1.2.0
Maximum-Likelihood Perfect Phylogeny Inference at Scale4 versions - Latest release: 11 months ago - 1 dependent package - 319 downloads last month - 5 stars on GitHub - 1 maintainer
scGate 1.6.2
Marker-Based Cell Type Purification for Single-Cell Sequencing Data3 versions - Latest release: 13 days ago - 2 dependent repositories - 450 downloads last month - 84 stars on GitHub - 1 maintainer
scTenifoldNet 1.2.4
Construct and Compare scGRN from Single-Cell Transcriptomic Data8 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 221 downloads last month - 16 stars on GitHub - 1 maintainer
rPanglaoDB 0.2.1
Download and Merge Single-Cell RNA-Seq Data from the PanglaoDB Database3 versions - Latest release: almost 3 years ago - 219 downloads last month - 23 stars on GitHub - 1 maintainer
immunarch 0.9.1
Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires10 versions - Latest release: about 2 months ago - 1.26 thousand downloads last month - 282 stars on GitHub - 1 maintainer
rliger 2.0.1
Linked Inference of Genomic Experimental Relationships5 versions - Latest release: about 1 month ago - 1 dependent package - 13 dependent repositories - 1.82 thousand downloads last month - 360 stars on GitHub - 1 maintainer
AnanseSeurat 1.2.0
Construct ANANSE GRN-Analysis Seurat2 versions - Latest release: 6 months ago - 724 downloads last month - 8 stars on GitHub - 1 maintainer
singleCellHaystack 1.0.2
A Universal Differential Expression Prediction Tool for Single-Cell and Spatial Genomics Data5 versions - Latest release: 4 months ago - 1 dependent repositories - 300 downloads last month - 69 stars on GitHub - 1 maintainer
scCustomize 2.1.2
Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing9 versions - Latest release: 2 months ago - 3.28 thousand downloads last month - 163 stars on GitHub - 1 maintainer
ClustAssess 0.3.0
Tools for Assessing Clustering3 versions - Latest release: over 2 years ago - 247 downloads last month - 18 stars on GitHub - 1 maintainer
digitalDLSorteR 1.0.1
Deconvolution of Bulk RNA-Seq Data Based on Deep Learning6 versions - Latest release: 3 months ago - 255 downloads last month - 6 stars on GitHub - 1 maintainer
clustermole 1.1.1
Unbiased Single-Cell Transcriptomic Data Cell Type Identification4 versions - Latest release: 4 months ago - 1 dependent repositories - 523 downloads last month - 10 stars on GitHub - 1 maintainer
SCpubr 2.0.2
Generate Publication Ready Visualizations of Single Cell Transcriptomics Data11 versions - Latest release: 7 months ago - 1 dependent repositories - 641 downloads last month - 125 stars on GitHub - 1 maintainer
tidygate 0.4.10 removed
Add Gate Information to Your Tibble8 versions - Latest release: 3 months ago - 6 dependent repositories - 436 downloads last month - 18 stars on GitHub - 1 maintainer
Related Keywords
r
8
single-cell-rna-seq
8
seurat
6
scrna-seq
5
ggplot2
4
bioinformatics
4
single-cell-analysis
3
single-cell-genomics
3
rna-seq
3
transcriptomics
3
marker-genes
2
cite-seq
2
clustering
2
visualization
2
scatac-seq
2
immune-repertoire
2
spatial-transcriptomics
2
deconvolution
2
dplyr
2
tibble
2
tidyverse
2
tidy-data
1
spatial-proteomics
1
pseudotime
1
single-cell-atac-seq
1
seurat-objects
1
grn-analysis
1
nonnegative-matrix-factorization
1
tcr-repertoire
1
tcr
1
t-cell-receptor
1
repertoire-analysis
1
rep-seq
1
immunology
1
immunoinformatics
1
immunoglobulin
1
immune-repertoire-data
1
immune-repertoire-analysis
1
ig-repertoire
1
ig
1
bcr-repertoire
1
bcr
1
data-visualization
1
publication-quality-plots
1
gene-expression-signatures
1
rstats
1
cell-type-matching
1
datavis
1
dataviz
1
cell-type-classification
1
drawing
1
cell-type
1
facs
1
deep-learning
1
unsupervised-learning
1
gate
1
robustness
1
parameter-optimization
1
machine-learning
1
genomics
1
interactive
1
pipe
1
programmatic
1
customization
1
b-cell-receptor
1
single-cell-omics
1
benchmarking
1
transcriptome
1
sequencing
1
cluster-annotation
1
cell-markers
1
atac
1
scrnaseq
1
immune-system
1
clonal-analysis
1
phylogeny
1
lineage-tracing
1
cnv-detection
1
cancer-genomics
1
umap
1
tsne
1
transcripts
1
tidyr
1
sct
1
purrr
1
pca
1
normalization
1
airr-analysis
1
data-mining
1
data-integration
1
tensor-decomposition
1
manifold-alignment
1
gene-regulatory-networks
1
differential-regulation-analysis
1
signatures
1
scgate
1
filtering
1
phylogenetics
1
evolution
1
scdeconr
1