Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "Metagenomics" keyword
binning-refiner 1.4.3
Binning_refiner4 versions - Latest release: over 3 years ago - 1 dependent repositories - 48 downloads last month - 30 stars on GitHub - 1 maintainer
rnavirhost
RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral gen...1 version - 0 stars on GitHub
hgtsim 1.1.0
a simulator for HGT in microbial communities1 version - Latest release: over 5 years ago - 1 dependent repositories - 11 downloads last month - 8 stars on GitHub - 1 maintainer
binette 1.0.0
Binette: accurate binning refinement tool to constructs high quality MAGs.3 versions - Latest release: 4 months ago - 25 downloads last month - 5 stars on GitHub - 1 maintainer
crocodeel 1.0.3
CroCoDeEL is a tool that detects cross-sample (aka well-to-well) contamination in shotgun metagen...4 versions - Latest release: 19 days ago - 387 downloads last month - 4 stars on GitHub - 1 maintainer
metachip2 2.3.8
HGT detection pipeline26 versions - Latest release: 6 months ago - 141 downloads last month - 0 stars on GitHub - 1 maintainer
meteor 2.0.10
Meteor - A plateform for quantitative metagenomic profiling of complex ecosystems11 versions - Latest release: 16 days ago - 1 dependent repositories - 604 downloads last month - 6 stars on GitHub - 1 maintainer
metachip 1.10.13
HGT detection pipeline60 versions - Latest release: about 1 year ago - 1 dependent repositories - 371 downloads last month - 49 stars on GitHub - 1 maintainer
markermag 1.1.28
linking MAGs with 16S rRNA marker genes79 versions - Latest release: about 1 year ago - 1 dependent repositories - 593 downloads last month - 1 maintainer
concoct 0.4.0
Clustering cONtigs with COverage and ComposiTion7 versions - Latest release: over 9 years ago - 3 dependent repositories - 35 downloads last month - 114 stars on GitHub - 1 maintainer
Related Keywords
Bioinformatics
6
metagenomics
6
Binning
3
bioinformatics
3
HGT_detection
2
lgt
2
lateral-gene-transfer
2
horizontal-gene-transfer
2
hgt
2
Refinement
2
Contig
1
Clustering
1
Scilifelab
1
Python
1
16S
1
MAG
1
taxonomic-classification
1
strain-profiling
1
functional-annotation
1
quality-control
1
contamination-detection
1
microbiology
1
metagenomics-binning
1
bioinformatics-tool
1
Prokaryote
1
binning
1
binning-refiner
1
refinement
1
Bioconda
1
simulator
1
HGT
1
MachineLearning
1
HostPrediction
1
RNAvirus
1