bioinformatics 73 genomics 17 python 11 microbiome 10 binning 9 microbiology 7 Metagenomics 7 assembly 6 ngs 6 taxonomy 6 deep-learning 6 taxonomic-classification 6 pipeline 5 sequencing 5 pangenome 5 snakemake 5 biology 4 contigs 4 assembly-graphs 4 conda 4 tool 4 bacteria 4 classification 4 clustering 4 workflow 4 machine-learning 4 Bioinformatics 4 metagenome-assembled genomes 3 alignment 3 NGS 3 viruses 3 profiling 3 metagenomic-pipeline 3 annotation 3 metagenomic-classification 3 computational-biology 3 hacktoberfest 3 metagenome-assembly 3 functional-annotation 3 ancient-dna 3 taxonomic-classifications 3 pipelines 3 k-mers 3 visualization 3 comparative-genomics 3 clark 2 biom-format 2 strain-level 2 rna-seq 2 MIDAS 2 BIOM 2 metagenome-assembled-genomes 2 virus 2 microbial-genomics 2 16s 2 hgt 2 horizontal-gene-transfer 2 lateral-gene-transfer 2 lgt 2 phage 2 genomic-binning 2 ngless 2 assembly-graph 2 simulation 2 biosynthetic-gene-clusters 2 self-supervised-learning 2 assembly-binning 2 taxonomic 2 metatranscriptomics 2 genome 2 phylogenetics 2 viral-metagenomics 2 kraken 2 nanopore 2 palaeogenomics 2 data 2 metagenomic-analysis 2 ancient-metagenomics 2 package-management 2 strains 2 Binning 2 Refinement 2 xgboost 1 sequence bloom trees 1 strain-profiling 1 kegg 1 genomes 1 differential-abundance 1 microbiome-data 1 superfocus_app 1 annotations 1 MicrobeCensus 1 human-gut 1 gcn 1 domain-adaptation 1 containment 1 hash 1 min 1 ecology 1 machine learning 1