Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "microbiology" keyword
pioreactor 24.5.13
The core Python app of the Pioreactor. Control your bioreactor through Python.61 versions - Latest release: 4 days ago - 1 dependent repositories - 434 downloads last month - 87 stars on GitHub - 1 maintainer
binette 1.0.0
Binette: accurate binning refinement tool to constructs high quality MAGs.3 versions - Latest release: 4 months ago - 24 downloads last month - 1 stars on GitHub - 1 maintainer
cocopye 0.4.0
Feature-based prediction of genome quality indices11 versions - Latest release: 3 months ago - 93 downloads last month - 1 stars on GitHub - 1 maintainer
phageboost 0.1.7
a Fast Prophage and Phage Predictor5 versions - Latest release: over 3 years ago - 1 dependent repositories - 56 downloads last month - 32 stars on GitHub - 1 maintainer
pygenomeviz 0.4.4
A genome visualization python package for comparative genomics23 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 535 downloads last month - 227 stars on GitHub - 1 maintainer
curveball 0.2.16
Predicting competition results from growth curves4 versions - Latest release: over 2 years ago - 2 dependent repositories - 108 downloads last month - 13 stars on GitHub - 1 maintainer
sphae 1.3.3
Assembling pure culture phages from both Illumina and Nanopore sequencing technology6 versions - Latest release: 15 days ago - 232 downloads last month - 15 stars on GitHub - 1 maintainer
pybarrnap 0.5.0
Python implementation of barrnap (Bacterial ribosomal RNA predictor)7 versions - Latest release: 2 months ago - 55 downloads last month - 7 stars on GitHub - 1 maintainer
kaptive 3.0.0b1
In silico serotyping1 version - Latest release: 23 days ago - 7 stars on GitHub - 1 maintainer
plasmidcanvas 1.0.0
A graphics package for creating customised plasmid maps2 versions - Latest release: about 1 month ago - 256 downloads last month - 1 stars on GitHub - 2 maintainers
parathaa 0.1.0
PARATHAA: Preserving and Assimilating Region-specific Ambiguities in Taxonomic Hierarchical Assig...1 version - Latest release: 5 months ago - 20 downloads last month - 1 stars on GitHub - 1 maintainer
micrompn 1.0.1
MicroMPN: Software to estimate Most Probable Number (MPN) bacterial abundance from microplates.2 versions - Latest release: 11 months ago - 9 downloads last month - 0 stars on GitHub - 1 maintainer
mlstclassifier-cd 0.3.4
multi-locus sequence type clade classifier for C.difficile8 versions - Latest release: about 2 months ago - 55 downloads last month - 0 stars on GitHub - 1 maintainer
calcfu 1.0.1
This package contains the CalCFU and Plate class for automatically calculating CFU counts under t...2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 29 downloads last month - 0 stars on GitHub - 1 maintainer
genbank-to 0.42
Convert GenBank format files to a swath of other formats7 versions - Latest release: about 2 years ago - 1 dependent repositories - 33 downloads last month - 11 stars on GitHub - 1 maintainer
tunacell 0.2.2
Analysis of Timeseries from dividing UNicellular microorganisms6 versions - Latest release: almost 5 years ago - 1 dependent repositories - 36 downloads last month - 1 stars on GitHub - 1 maintainer
subtil 0.1.0
Subgroup discovery platform for examination of Bacterial TIme-Lapse microscopy dataset1 version - Latest release: almost 6 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
shortbred 0.9.5
ShortBRED: a system for profiling protein families of interest at very high specificity in shotgu...1 version - Latest release: almost 4 years ago - 1 dependent repositories - 8 downloads last month - 1 maintainer
referenceseeker 1.8.0
ReferenceSeeker: rapid determination of appropriate reference genomes.12 versions - Latest release: over 2 years ago - 1 dependent repositories - 130 downloads last month - 85 stars on GitHub - 1 maintainer
Top 8.0% on pypi.org
4 versions - Latest release: almost 9 years ago - 8 dependent repositories - 133 downloads last month - 1 maintainer
qiime 1.9.1
Quantitative Insights Into Microbial Ecology4 versions - Latest release: almost 9 years ago - 8 dependent repositories - 133 downloads last month - 1 maintainer
p-tree 0.1.16
A program for counting CFUs in petri dishes11 versions - Latest release: over 6 years ago - 1 dependent repositories - 56 downloads last month - 0 stars on GitHub - 1 maintainer
phispy 4.2.21
Prophage finder using multiple metrics31 versions - Latest release: over 2 years ago - 1 dependent repositories - 99 downloads last month - 63 stars on GitHub - 1 maintainer
mgkit 0.5.8
Metagenomics Framework30 versions - Latest release: over 2 years ago - 2 dependent repositories - 147 downloads last month - 12 stars on GitHub - 1 maintainer
metawibele 0.4.7
MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome10 versions - Latest release: 8 months ago - 1 dependent repositories - 52 downloads last month - 18 stars on GitHub - 1 maintainer
lpsn 1.0.0
LPSN-API - Programmatic Access to LPSN3 versions - Latest release: 3 months ago - 1 dependent repositories - 78 downloads last month - 659 stars on GitHub - 1 maintainer
humann2 2.8.2
HUMAnN2: The HMP Unified Metabolic Analysis Network 225 versions - Latest release: about 4 years ago - 6 dependent repositories - 132 downloads last month - 1 maintainer
humann 3.6.1
HUMAnN: The HMP Unified Metabolic Analysis Network, version 315 versions - Latest release: about 1 year ago - 1 dependent repositories - 584 downloads last month - 1 maintainer
grna-create 0.0.2
A tool to create gRNAs2 versions - Latest release: over 2 years ago - 1 dependent repositories - 26 downloads last month - 1 stars on GitHub - 1 maintainer
commscores 0.0.10
A Python package for quantifying microbial interactions5 versions - Latest release: 9 months ago - 14 downloads last month - 0 stars on GitHub - 1 maintainer
cb-platon 1.4.0
Platon: identification and characterization of bacterial plasmid contigs from short-read draft as...10 versions - Latest release: almost 4 years ago - 1 dependent repositories - 63 downloads last month - 97 stars on GitHub - 1 maintainer
biobakery-workflows 0.15.1
bioBakery workflows: A collection of meta'omic analysis workflows24 versions - Latest release: almost 4 years ago - 101 downloads last month - 1 maintainer
bacdive 1.0.0
BacDive-API - Programmatic Access to the BacDive Database6 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 232 downloads last month - 2 maintainers
silvio 0.2.5
silvio is an environment for Simulation of Virtual Organisms. silvio contains several linked micr...11 versions - Latest release: 3 months ago - 1 dependent repositories - 95 downloads last month - 1 maintainer
anvio 2.4.0
An interactive analysis and visualization platform for 'omics data. See https://merenlab.org/proj...29 versions - Latest release: almost 7 years ago - 2 dependent repositories - 85 downloads last month - 1 maintainer
kneaddata 0.12.0
13 versions - Latest release: over 1 year ago - 1 dependent repositories - 204 downloads last month - 1 maintainerpyctv-taxonomy 0.25
Download ICTV Virus Classifications as Python Objects1 version - Latest release: about 1 year ago - 9 downloads last month - 2 stars on GitHub - 1 maintainer
qiime-tools 1.1.2
Useful additions to the QIIME analysis pipeline including tools for data visualization and cluste...3 versions - Latest release: over 9 years ago - 3 dependent repositories - 41 downloads last month - 12 stars on GitHub - 1 maintainer
drep 3.5.0
De-replication of microbial genomes assembled from multiple samples63 versions - Latest release: 3 months ago - 1 dependent repositories - 545 downloads last month - 234 stars on GitHub - 1 maintainer
microbecensus 1.2.2
A command-line tool for estimating average genome size from shotgun sequence data8 versions - Latest release: 8 months ago - 1 dependent repositories - 43 downloads last month - 37 stars on GitHub - 1 maintainer
phylotoast 1.3.0
Tools for phylogenetic data analysis including visualization and cluster-computing support.1 version - Latest release: about 8 years ago - 2 dependent repositories - 18 downloads last month - 12 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
25
microbiome
10
bacteria
9
genomics
8
metagenomics
7
python
7
microbial
7
metagenomic
7
genome
5
metatranscriptomic
5
biology
4
microbial-genomics
4
visualization
4
phage
4
computational-biology
3
anadama2
3
humann
3
assembly
3
wgs
3
ngs
3
qiime
3
gff
2
genbank
2
cross-platform
2
16s
2
hpc
2
16S
2
microbial ecology
2
science
2
prophage
2
QIIME
2
plasmids
2
evolution
2
microbiome-analysis
2
pbs
2
phylogenetics
2
slurm
2
public
1
biobakery
1
tools
1
archived
1
taxonomy
1
nomenclature
1
archaea
1
keycloak
1
microbial-genomes
1
humann2
1
metawibele
1
MicrobeCensus
1
bioactive
1
gene catalog
1
ecology
1
metagenomic-pipeline
1
fasta
1
snps
1
library
1
labs
1
lab
1
engineering
1
colony
1
petri
1
phylotoast
1
SNP
1
bam
1
sequencing
1
SNV
1
pipeline
1
kneaddata
1
virus
1
MBL
1
shotgun
1
metatranscriptomics
1
systems biology
1
virtual cell
1
biotechnology
1
phenotypes
1
strains
1
strainphlan
1
metaphlan
1
contigs
1
competition
1
syntrophy
1
interaction
1
scores
1
community
1
grna
1
broad-spectrum
1
bioreactor
1
Refinement
1
Metagenomics
1
bioinformatics-tool
1
metagenomics-binning
1
genome quality
1
machine learning
1
matplotlib
1
comparative-genomics
1
genomics-visualization
1
gff3
1
synteny
1
biomath
1