pypi.org "microbiology" keyword
View the packages on the pypi.org package registry that are tagged with the "microbiology" keyword.
subtil 0.1.0
Subgroup discovery platform for examination of Bacterial TIme-Lapse microscopy dataset1 version - Latest release: almost 7 years ago - 1 dependent repositories - 59 downloads last month - 1 stars on GitHub - 1 maintainer
humann2 2.8.2
HUMAnN2: The HMP Unified Metabolic Analysis Network 225 versions - Latest release: about 5 years ago - 6 dependent repositories - 416 downloads last month - 1 maintainer
amr 2.1.1.9246
A Python wrapper for the AMR R package102 versions - Latest release: about 3 hours ago - 6.43 thousand downloads last month - 95 stars on GitHub - 1 maintainer
biobakery-workflows 0.15.1
bioBakery workflows: A collection of meta'omic analysis workflows25 versions - Latest release: almost 5 years ago - 485 downloads last month - 1 maintainer
mgkit 0.5.8
Metagenomics Framework30 versions - Latest release: over 3 years ago - 2 dependent repositories - 1.09 thousand downloads last month - 17 stars on GitHub - 1 maintainer
shortbred 0.9.5
ShortBRED: a system for profiling protein families of interest at very high specificity in shotgu...1 version - Latest release: almost 5 years ago - 1 dependent repositories - 28 downloads last month - 1 maintainer
silvio 0.2.11
silvio is an environment for Simulation of Virtual Organisms. silvio contains several linked micr...16 versions - Latest release: 2 months ago - 1 dependent repositories - 465 downloads last month - 1 maintainer
grna-create 0.0.2
A tool to create gRNAs2 versions - Latest release: over 3 years ago - 1 dependent repositories - 99 downloads last month - 1 stars on GitHub - 1 maintainer
drep 3.6.2
De-replication of microbial genomes assembled from multiple samples65 versions - Latest release: 5 days ago - 1 dependent repositories - 1.15 thousand downloads last month - 280 stars on GitHub - 1 maintainer
baqlava 0.5
BAQLaVa: Bioinformatic Application of Quantification and Labeling of Viral Taxonomy (BAQLaVa).1 version - Latest release: 2 months ago - 83 downloads last month - 3 stars on GitHub - 1 maintainer
fugassem 0.3.8
FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional commu...3 versions - Latest release: 23 days ago - 233 downloads last month - 3 stars on GitHub - 1 maintainer
waafle 1.1.0
WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events4 versions - Latest release: 6 months ago - 1 dependent repositories - 145 downloads last month - 11 stars on GitHub - 1 maintainer
parathaa 0.2.1
PARATHAA: Preserving and Assimilating Region-specific Ambiguities in Taxonomic Hierarchical Assig...3 versions - Latest release: about 2 months ago - 129 downloads last month - 3 stars on GitHub - 1 maintainer
metawibele 0.4.8
MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome11 versions - Latest release: 8 months ago - 1 dependent repositories - 290 downloads last month - 21 stars on GitHub - 1 maintainer
lpsn 1.0.0
LPSN-API - Programmatic Access to LPSN3 versions - Latest release: about 1 year ago - 1 dependent repositories - 246 downloads last month - 775 stars on GitHub - 1 maintainer
genbank-to 0.42
Convert GenBank format files to a swath of other formats7 versions - Latest release: almost 3 years ago - 1 dependent repositories - 238 downloads last month - 16 stars on GitHub - 1 maintainer
pioreactor 25.4.11
The core Python app of the Pioreactor. Control your bioreactor through Python.107 versions - Latest release: 8 days ago - 1 dependent repositories - 1.86 thousand downloads last month - 97 stars on GitHub - 1 maintainer
bayesian-mpn-calculator 0.1.0
A package to calculate Most Probable Number (MPN) using Bayesian inference.1 version - Latest release: 8 months ago - 59 downloads last month - 1 maintainer
p-tree 0.1.16
A program for counting CFUs in petri dishes11 versions - Latest release: over 7 years ago - 1 dependent repositories - 135 downloads last month - 0 stars on GitHub - 1 maintainer
pygenomeviz 1.5.0
A genome visualization python package for comparative genomics32 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 1.45 thousand downloads last month - 274 stars on GitHub - 1 maintainer
pybarrnap 0.5.1
Python implementation of barrnap (Bacterial ribosomal RNA predictor)8 versions - Latest release: 3 months ago - 315 downloads last month - 17 stars on GitHub - 1 maintainer
referenceseeker 1.8.0
ReferenceSeeker: rapid determination of appropriate reference genomes.12 versions - Latest release: over 3 years ago - 1 dependent repositories - 242 downloads last month - 89 stars on GitHub - 1 maintainer
binette 1.1.1
Binette: accurate binning refinement tool to constructs high quality MAGs.10 versions - Latest release: about 1 month ago - 514 downloads last month - 33 stars on GitHub - 1 maintainer
mobspy 2.6.1
A Query-Based Language for Chemical Reaction Networks31 versions - Latest release: 9 days ago - 1 dependent repositories - 513 downloads last month - 21 stars on GitHub - 3 maintainers
kaptive 3.1.0
In silico serotyping5 versions - Latest release: 9 days ago - 265 downloads last month - 7 stars on GitHub - 1 maintainer
Top 8.0% on pypi.org
4 versions - Latest release: almost 10 years ago - 8 dependent repositories - 215 downloads last month - 1 maintainer
qiime 1.9.1
Quantitative Insights Into Microbial Ecology4 versions - Latest release: almost 10 years ago - 8 dependent repositories - 215 downloads last month - 1 maintainer
anvio 2.4.0
An interactive analysis and visualization platform for 'omics data. See https://merenlab.org/proj...29 versions - Latest release: over 7 years ago - 2 dependent repositories - 688 downloads last month - 1 maintainer
sphae 1.4.8
Phage workflow14 versions - Latest release: about 1 month ago - 537 downloads last month - 23 stars on GitHub - 1 maintainer
commscores 0.0.10
A Python package for quantifying microbial interactions5 versions - Latest release: over 1 year ago - 101 downloads last month - 0 stars on GitHub - 1 maintainer
bacdive 1.0.0
BacDive-API - Programmatic Access to the BacDive Database6 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 383 downloads last month - 2 maintainers
tunacell 0.2.2
Analysis of Timeseries from dividing UNicellular microorganisms6 versions - Latest release: over 5 years ago - 1 dependent repositories - 115 downloads last month - 1 stars on GitHub - 1 maintainer
humann 3.6.1
HUMAnN: The HMP Unified Metabolic Analysis Network, version 316 versions - Latest release: about 2 years ago - 1 dependent repositories - 510 downloads last month - 1 maintainer
curveball 0.2.16
Predicting competition results from growth curves4 versions - Latest release: over 3 years ago - 2 dependent repositories - 217 downloads last month - 14 stars on GitHub - 1 maintainer
microbecensus 1.2.2
A command-line tool for estimating average genome size from shotgun sequence data8 versions - Latest release: over 1 year ago - 1 dependent repositories - 196 downloads last month - 43 stars on GitHub - 1 maintainer
kneaddata 0.12.2
15 versions - Latest release: about 2 months ago - 1 dependent repositories - 666 downloads last month - 1 maintainerphageboost 0.1.7
a Fast Prophage and Phage Predictor5 versions - Latest release: over 4 years ago - 1 dependent repositories - 136 downloads last month - 37 stars on GitHub - 1 maintainer
cb-platon 1.4.0
Platon: identification and characterization of bacterial plasmid contigs from short-read draft as...10 versions - Latest release: almost 5 years ago - 1 dependent repositories - 347 downloads last month - 98 stars on GitHub - 1 maintainer
phylotoast 1.3.0
Tools for phylogenetic data analysis including visualization and cluster-computing support.1 version - Latest release: about 9 years ago - 2 dependent repositories - 49 downloads last month - 14 stars on GitHub - 1 maintainer
qiime-tools 1.1.2
Useful additions to the QIIME analysis pipeline including tools for data visualization and cluste...3 versions - Latest release: over 10 years ago - 3 dependent repositories - 128 downloads last month - 14 stars on GitHub - 1 maintainer
cocopye 0.5.0
Feature-based prediction of genome quality indices12 versions - Latest release: 9 months ago - 340 downloads last month - 2 stars on GitHub - 1 maintainer
pyctv-taxonomy 0.25
Download ICTV Virus Classifications as Python Objects1 version - Latest release: about 2 years ago - 25 downloads last month - 2 stars on GitHub - 1 maintainer
phispy 4.2.21
Prophage finder using multiple metrics31 versions - Latest release: about 3 years ago - 1 dependent repositories - 764 downloads last month - 76 stars on GitHub - 1 maintainer
plasmidcanvas 1.0.0
A graphics package for creating customised plasmid maps2 versions - Latest release: about 1 year ago - 88 downloads last month - 1 stars on GitHub - 2 maintainers
micrompn 1.0.1
MicroMPN: Software to estimate Most Probable Number (MPN) bacterial abundance from microplates.2 versions - Latest release: almost 2 years ago - 86 downloads last month - 1 stars on GitHub - 1 maintainer
mlstclassifier_cd 0.4.3
multi-locus sequence type clade classifier for C.difficile8 versions - Latest release: 10 months ago - 223 downloads last month - 0 stars on GitHub - 1 maintainer
calcfu 1.0.1
This package contains the CalCFU and Plate class for automatically calculating CFU counts under t...2 versions - Latest release: over 2 years ago - 1 dependent repositories - 98 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
29
microbiome
13
microbial
10
metagenomic
10
python
8
genomics
8
bacteria
8
metatranscriptomic
7
metagenomics
7
genome
5
anadama2
5
microbial-genomics
4
visualization
4
biology
4
phage
4
computational-biology
3
assembly
3
ngs
3
wgs
3
qiime
3
humann
3
tools
2
QIIME
2
biobakery
2
plasmids
2
prophage
2
microbial ecology
2
16S
2
16s
2
baqlava
2
cross-platform
2
genbank
2
hpc
2
microbiome-analysis
2
pbs
2
phylogenetics
2
slurm
2
gff
2
science
2
evolution
2
contigs
1
sequencing
1
bam
1
syntrophy
1
interaction
1
scores
1
community
1
phage therapy
1
SNV
1
SNP
1
Refinement
1
Metagenomics
1
bioinformatics-tool
1
metagenomics-binning
1
CRN
1
synthetic biology
1
simulation
1
SBML
1
specification language
1
biosystems
1
chemical-reaction-networks
1
modeling
1
serotyping
1
metatranscriptomics
1
shotgun
1
MBL
1
pipeline
1
phylotoast
1
genome quality
1
virus
1
plasmid
1
plasmidmap
1
map
1
microbiology-publication
1
mpn
1
clade
1
classifier
1
machine-learning
1
mlst
1
multi-locus-sequence-typing
1
tool
1
calculator
1
r-shiny
1
competition
1
strains
1
phenotypes
1
microscopy
1
time-lapse
1
cell-division
1
analysis
1
statistics
1
dynamics
1
cross-correlations
1
data-analysis
1
time-series-analysis
1
biomath
1
MicrobeCensus
1
ecology
1
kneaddata
1
machine learning
1