Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "bioinformatics-tool" keyword
genomap 1.3.6
Genomap converts tabular gene expression data into spatially meaningful images.24 versions - Latest release: 9 months ago - 243 downloads last month - 9 stars on GitHub - 1 maintainer
open-cravat-multiuser 2.5.0
OpenCRAVAT Multiuser Addon10 versions - Latest release: 3 months ago - 1 dependent repositories - 65 downloads last month - 108 stars on GitHub - 1 maintainer
genegrouper 1.0.3
Find and cluster genomic regions containing a seed gene7 versions - Latest release: over 2 years ago - 1 dependent repositories - 72 downloads last month - 17 stars on GitHub - 1 maintainer
binette 1.0.0
Binette: accurate binning refinement tool to constructs high quality MAGs.3 versions - Latest release: 4 months ago - 24 downloads last month - 1 stars on GitHub - 1 maintainer
phigaro 2.4.0
Phigaro is a scalable command-line tool for predicting phages and prophages.34 versions - Latest release: 4 months ago - 1 dependent repositories - 264 downloads last month - 46 stars on GitHub - 3 maintainers
pybiotk 1.2.8
pybiotk: A python toolkit for bioinformatics analysis.18 versions - Latest release: 4 days ago - 104 downloads last month - 0 stars on GitHub - 1 maintainer
rnalysis 3.12.0 💰
RNAlysis is an analysis software for RNA sequencing data. RNAlysis can help to filter, visualize,...39 versions - Latest release: 3 days ago - 1 dependent repositories - 620 downloads last month - 121 stars on GitHub - 1 maintainer
tidytcells 2.1.1
Standardise TR/MH data33 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 292 downloads last month - 4 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
13 versions - Latest release: about 6 years ago - 4 dependent packages - 7 dependent repositories - 216 downloads last month - 67 stars on GitHub - 1 maintainer
mnnpy 0.1.9
Mutual nearest neighbors correction in python.13 versions - Latest release: about 6 years ago - 4 dependent packages - 7 dependent repositories - 216 downloads last month - 67 stars on GitHub - 1 maintainer
easyliftover 0.0.16
A python package for lifting over biological files16 versions - Latest release: 6 months ago - 211 downloads last month - 0 stars on GitHub - 1 maintainer
stitchr 1.1.3
Stitch together coding TCR sequences from V/J/CDR3 information4 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 343 downloads last month - 45 stars on GitHub - 1 maintainer
codonu 1.1.2
An integrated package for codon usage analysis5 versions - Latest release: 8 months ago - 80 downloads last month - 16 stars on GitHub - 1 maintainer
bioat 0.11.3
Bioinformatic toolkit with python92 versions - Latest release: 6 days ago - 561 downloads last month - 2 stars on GitHub - 1 maintainer
clcr 1.0.0
Tool fo low coverage region correction1 version - Latest release: almost 2 years ago - 10 downloads last month - 3 stars on GitHub - 1 maintainer
wlabkit 0.8.0
A toolkit to handle bio-data from WeiBin Lab.21 versions - Latest release: almost 2 years ago - 1 dependent repositories - 96 downloads last month - 7 stars on GitHub - 1 maintainer
viola-sv 1.0.2 💰
SV signature analysis tool with custom SV type13 versions - Latest release: almost 2 years ago - 1 dependent repositories - 80 downloads last month - 25 stars on GitHub - 1 maintainer
tmerge 2.0.3
Merge transcriptome read-to-genome alignments into non-redundant transcript models.4 versions - Latest release: almost 4 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 1 maintainer
reactomepy 0.68.9 removed 💰
Explore biomolecular pathways in Reactome from the command line1 version - Latest release: about 5 years ago - 1 dependent repositories - 6 downloads last month - 15 stars on GitHub - 1 maintainer
pyreqtl 0.4.0
A python library equivalent to R ReQTL Toolkit.1 version - Latest release: over 3 years ago - 1 dependent repositories - 10 downloads last month - 10 stars on GitHub - 1 maintainer
ngsci 0.0.1
The Next Generation Sequencing Complexity Index1 version - Latest release: over 3 years ago - 1 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
neticspy 0.1.5
Python implementation of NetICS. (Network-based Integration of Multi-omics data).11 versions - Latest release: over 2 years ago - 1 dependent repositories - 32 downloads last month - 1 stars on GitHub - 2 maintainers
nease 1.3.1
NEASE: A network-based approach for the enrichment of alternative splicing events14 versions - Latest release: 29 days ago - 2 dependent packages - 2 dependent repositories - 78 downloads last month - 12 stars on GitHub - 1 maintainer
multiqc-plugins 1.2.1
MultiQC plugins for the Zavolan Lab @ University of Basel, Switzerland2 versions - Latest release: almost 3 years ago - 2 dependent repositories - 19 downloads last month - 1 stars on GitHub - 1 maintainer
lightdock 0.9.4 💰
A macromolecular docking framework20 versions - Latest release: 9 months ago - 1 dependent repositories - 527 downloads last month - 259 stars on GitHub - 1 maintainer
ilearnplus 1.5
A comprehensive and automated machine-learning platform for nucleic acid and protein sequence ana...4 versions - Latest release: 2 months ago - 1 dependent repositories - 118 downloads last month - 81 stars on GitHub - 1 maintainer
ifeatureomegacli 1.0.2
An integrative platform for the prediction/feature engineering, visualization and analysis of fea...3 versions - Latest release: about 2 years ago - 1 dependent repositories - 205 downloads last month - 22 stars on GitHub - 1 maintainer
hydrocluster 0.2.0
Cluster analysis of hydrophobic or charged regions of macromolecules. The program is based on the...2 versions - Latest release: over 5 years ago - 1 dependent repositories - 23 downloads last month - 2 stars on GitHub - 1 maintainer
hybkit 0.3.3
Toolkit for analysis of chimeric (hybrid) RNA sequence data.6 versions - Latest release: 9 months ago - 1 dependent repositories - 46 downloads last month - 8 stars on GitHub - 1 maintainer
hichip-peaks 0.1.2
A tool to find peaks from hichip data3 versions - Latest release: about 4 years ago - 1 dependent repositories - 31 downloads last month - 8 stars on GitHub - 1 maintainer
geneview 0.2.1
Geneview: A python package for genomics data visualization.22 versions - Latest release: 11 months ago - 1 dependent package - 2 dependent repositories - 209 downloads last month - 58 stars on GitHub - 1 maintainer
fluentdna 2.5.3
Visualization tool for bare fasta files. Supports whole genome alignment and multiple sequence a...3 versions - Latest release: over 4 years ago - 1 dependent repositories - 27 downloads last month - 59 stars on GitHub - 1 maintainer
dna-analyser-ibp 3.6.0
DNA analyser API wrapper tool for Jupiter notebooks.33 versions - Latest release: 8 months ago - 1 dependent repositories - 287 downloads last month - 1 stars on GitHub - 1 maintainer
davidpy 0.1.1
Python3 extension for DAVID Bioinformatics Tool2 versions - Latest release: over 2 years ago - 1 dependent repositories - 25 downloads last month - 3 stars on GitHub - 1 maintainer
bv 0.1.4
Data Viewer in Terminal for Bioinformatician6 versions - Latest release: over 5 years ago - 1 dependent repositories - 82 downloads last month - 2 stars on GitHub - 1 maintainer
biolearns 0.0.62
BioLearns: Computational Biology and Bioinformatics Toolbox in Python58 versions - Latest release: over 1 year ago - 1 dependent repositories - 436 downloads last month - 10 stars on GitHub - 1 maintainer
better-fasta-grep 1.0.4
Grep-like tool for retrieving matching sequence records from a FASTA file5 versions - Latest release: about 1 year ago - 1 dependent repositories - 42 downloads last month - 3 stars on GitHub - 2 maintainers
ciara-python 1.0.4
"Cluster Independent Algorithm for the identification of RAre cell types."6 versions - Latest release: over 1 year ago - 52 downloads last month - 7 stars on GitHub - 1 maintainer
protstruc 0.0.7
Utility library for handling protein structures in Python.7 versions - Latest release: 9 months ago - 66 downloads last month - 2 stars on GitHub - 1 maintainer
ifeatureomegagui 1.0.5
An integrative platform for the prediction/feature engineering, visualization and analysis of fea...5 versions - Latest release: about 2 years ago - 1 dependent repositories - 57 downloads last month - 22 stars on GitHub - 1 maintainer
biotea 1.1.0
Tea, short for Transcript Enrichment Analysis is a pipeline for performing Differential Expressio...5 versions - Latest release: over 1 year ago - 1 dependent repositories - 48 downloads last month - 3 stars on GitHub - 1 maintainer
zeagenemap 1.3.1
A python tool for identifying the mapping of genes between two genomes.5 versions - Latest release: almost 2 years ago - 38 downloads last month - 6 stars on GitHub - 1 maintainer
gmql 0.1.1
Python Library for data analysis based on GMQL13 versions - Latest release: almost 5 years ago - 1 dependent repositories - 85 downloads last month - 11 stars on GitHub - 1 maintainer
tigmint 1.1.2
Correct misassemblies using linked reads1 version - Latest release: over 5 years ago - 2 dependent repositories - 21 downloads last month - 54 stars on GitHub - 1 maintainer
gppy 0.1.3
Genomic Position with Python (GPPY)3 versions - Latest release: 7 months ago - 37 downloads last month - 7 stars on GitHub - 1 maintainer
fastx-barber 0.1.5
FASTX trimming tools7 versions - Latest release: almost 3 years ago - 1 dependent repositories - 55 downloads last month - 4 stars on GitHub - 1 maintainer
cloops2 0.0.5
Loop-calling and peak-calling for sequencing-based interaction data, including related analysis u...3 versions - Latest release: 10 months ago - 1 dependent repositories - 49 downloads last month - 35 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
35
python
12
bioinformatics-analysis
8
bioinformatics-pipeline
7
genomics
7
visualization
5
rna-seq
5
transcriptomics
4
genomic-data-analysis
4
python3
4
rna-seq-analysis
3
protein-structure
3
fasta
3
protein-protein-interaction
3
protein
3
dna
3
hichip
2
biological-data-analysis
2
rna-seq-pipeline
2
rnaseq
2
immunology
2
pandas
2
molecular-biology
2
tcr
2
command-line-tool
2
computational-biology
2
sequencing
2
data-science
2
biological-data-visualization
2
biological-sequences-analysis
2
deep-learning
2
feature-analysis
2
feature-engineering
2
clustering
2
protein-design
2
protein structure
2
feature-selection
2
multi-omic-integration
2
p53
1
g4killer
1
g4hunter
1
DNA
1
msa
1
liftover
1
molecular modeling
1
fluentdna
1
fluent
1
api-client
1
g4
1
inverted-repeats
1
palindrome
1
r-loops
1
rna
1
david
1
functional-annotation
1
terminal
1
viewer
1
grep
1
regular-expressions
1
un-limited-resolution
1
Hybrids
1
CLASH
1
qCLASH
1
Hyb
1
CLEAR-CLIP
1
Chimeric e-CLIP
1
clash
1
hyb
1
qclash
1
ribonomics
1
Ribonomics
1
data-visualization
1
genomics-data-visualization
1
microRNAs
1
genetics
1
DBSCAN
1
hydrophobic cluster
1
matplotlib
1
plotting
1
hydrophobic core
1
bioinformatic
1
chain
1
alignment
1
species diversity
1
chain-alignment
1
ddv
1
fasta-sequences
1
Hi-Trac
1
loop-calling
1
peak-calling
1
trimmer
1
trim
1
regular-expression
1
hacktoberfest
1
fastx-barber
1
fastx
1
extract-flags
1
trimming
1
fastq
1
misassembly-correction
1