pypi.org "16S" keyword
taxonova 26.11.3
Taxonomic classification of 16S rRNA and rRNA operon amplicon sequences with confidence-aware dee...13 versions - Latest release: 3 days ago - 359 downloads last month - 2 stars on GitHub - 1 maintainer
mtags 1.0.4
mTAGs - taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA gene.2 versions - Latest release: about 5 years ago - 1 dependent repositories - 10 downloads last month - 7 stars on GitHub - 1 maintainer
qiime-tools 1.1.2
Useful additions to the QIIME analysis pipeline including tools for data visualization and cluste...3 versions - Latest release: about 12 years ago - 3 dependent repositories - 28 downloads last month - 15 stars on GitHub - 1 maintainer
phylotoast 1.3.0
Tools for phylogenetic data analysis including visualization and cluster-computing support.1 version - Latest release: over 10 years ago - 2 dependent repositories - 23 downloads last month - 15 stars on GitHub - 1 maintainer
markermag 1.1.28
linking MAGs with 16S rRNA marker genes79 versions - Latest release: over 3 years ago - 1 dependent repositories - 153 downloads last month - 1 maintainer
buty_full 1.0.1
Inferring traits by 16S2 versions - Latest release: over 7 years ago - 16 downloads last month - 0 stars on GitHub - 1 maintainer
buty-phyl 1.0.7
Inferring traits by 16S7 versions - Latest release: almost 7 years ago - 81 downloads last month - 0 stars on GitHub - 1 maintainer
bayerstraits_16s 1.0.6
Inferring traits by 16S7 versions - Latest release: over 7 years ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
ampliqc 0.1.1
ampliQC: Context-aware Quality Control (QC) engine specialized for Amplicon sequencing data (16S,...2 versions - Latest release: 3 months ago - 0 stars on GitHub - 1 maintainer
pydada2 0.1.0
Pure-Python DADA2 — exact amplicon sequence variant inference from amplicon sequencing data.1 version - Latest release: 7 months ago - 13 downloads last month - 1 stars on GitHub - 1 maintainer
microcafe 0.1.0
Python SDK for microCafe - AI-powered microbiome analysis1 version - Latest release: 8 months ago - 25 downloads last month - 1 maintainer
papasmurf 0.1.1
PyO3 bindings and Python interface to PAPASMURF, a Platform-Accelerated Package for Alignment-fre...2 versions - Latest release: 8 months ago - 15 downloads last month - 1 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
7
microbiome
6
metagenomics
4
amplicon
3
16s
3
microbial ecology
2
microbiology
2
computational-biology
2
cross-platform
2
hpc
2
microbial-genomics
2
microbiome-analysis
2
pbs
2
phylogenetics
2
python
2
qiime
2
slurm
2
visualization
2
taxonomy
2
QIIME
2
ITS
2
metabarcoding
2
vsearch
1
api
1
genomics
1
ampliQC
1
profiling
1
Bioinformatics
1
Metagenomics
1
MAG
1
ASV
1
dada2
1
denoising
1
sequencing
1
classification
1
deep-learning
1
rRNA
1
alignment
1
ngs
1
quality-control
1
QC
1
18S
1
DADA2
1
Cutadapt
1
Illumina
1
Nanopore
1
PacBio
1
bacterial genomes
1
function
1
traits
1
phylotoast
1