Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "connectomics" keyword

labelops 0.0.0
Operates on labeled neuronal meshes.
1 version - Latest release: over 5 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 2 maintainers
Top 6.0% on pypi.org
zmesh 1.7.1
Multilabel marching cubes and simplification of volumetric data.
20 versions - Latest release: 6 months ago - 3 dependent packages - 7 dependent repositories - 1.57 thousand downloads last month - 55 stars on GitHub - 2 maintainers
Top 7.0% on pypi.org
caveclient 5.21.0
A client for interacting with the Connectome Annotation Versioning Engine
79 versions - Latest release: 8 days ago - 5 dependent packages - 17 dependent repositories - 1.27 thousand downloads last month - 19 stars on GitHub - 6 maintainers
diluvian 0.0.6
Flood filling networks for segmenting electron microscopy of neural tissue.
6 versions - Latest release: about 6 years ago - 1 dependent repositories - 65 downloads last month - 23 stars on GitHub - 1 maintainer
dotmotif 0.14.0
Find graph motifs using simple, intuitive notation.
12 versions - Latest release: 12 months ago - 2 dependent repositories - 677 downloads last month - 80 stars on GitHub - 2 maintainers
Top 6.5% on pypi.org
kimimaro 3.6.0
Skeletonize densely labeled image volumes.
55 versions - Latest release: 1 day ago - 1 dependent package - 12 dependent repositories - 2.2 thousand downloads last month - 122 stars on GitHub - 2 maintainers
annotationframeworkclient 3.1.0
a service for interacting with the AnnotationFramework
33 versions - Latest release: almost 3 years ago - 1 dependent package - 2 dependent repositories - 145 downloads last month - 19 stars on GitHub - 4 maintainers
ocpy 0.5.3
Deprecated. Use ndio instead.
10 versions - Latest release: over 8 years ago - 2 dependent repositories - 36 downloads last month - 2 maintainers
connectome-interpreter 1.7.0
A tool for connectomics data interpretation
26 versions - Latest release: 3 days ago - 1.02 thousand downloads last month - 0 stars on GitHub - 2 maintainers
Top 1.4% on pypi.org
dipy 1.9.0
Diffusion MRI Imaging in Python
27 versions - Latest release: about 2 months ago - 38 dependent packages - 204 dependent repositories - 30.4 thousand downloads last month - 651 stars on GitHub - 4 maintainers
Top 9.6% on pypi.org
igneous-pipeline 4.22.1
Manage, Downsample, Mesh, Skeletonize, and Transform Neuroglancer Datasets
60 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 490 downloads last month - 37 stars on GitHub - 1 maintainer
xs3d 1.7.0
Compute cross sectional area of 3d shapes.
10 versions - Latest release: about 1 month ago - 3.34 thousand downloads last month - 37 stars on GitHub - 2 maintainers
Top 6.8% on pypi.org
fpzip 1.2.3
Numpy wrapper for fpzip algorithm (P. Lindstrom & M. Isenburg, 2006)
15 versions - Latest release: 5 months ago - 1 dependent package - 12 dependent repositories - 20.9 thousand downloads last month - 32 stars on GitHub - 2 maintainers
boss-ingest 0.12.0
Ingest client for the Boss
17 versions - Latest release: about 3 years ago - 1 dependent repositories - 130 downloads last month - 5 stars on GitHub - 4 maintainers
contact-points 0.0.7
Find contact points in a 3D Volume.
7 versions - Latest release: about 3 years ago - 1 dependent repositories - 29 downloads last month - 6 stars on GitHub - 4 maintainers
feabas 2.1.0
A python library for stitching & alignment of connectome datasets using finite-element method.
9 versions - Latest release: 2 months ago - 25 downloads last month - 9 stars on GitHub - 2 maintainers
Top 9.8% on pypi.org
intern 1.4.1
Python SDK for interacting with neuroscience data via the Boss API.
24 versions - Latest release: about 1 year ago - 3 dependent packages - 11 dependent repositories - 213 downloads last month - 19 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
grandiso 2.2.0
Performant subgraph isomorphism
9 versions - Latest release: 3 months ago - 1 dependent package - 10 dependent repositories - 1.05 thousand downloads last month - 49 stars on GitHub - 2 maintainers
Top 6.2% on pypi.org
skeletor 1.3.0
Python 3 library to extract skeletons from 3D meshes
8 versions - Latest release: 27 days ago - 2 dependent packages - 5 dependent repositories - 1.79 thousand downloads last month - 175 stars on GitHub - 1 maintainer
cits 1.3
CITS algorithm for inferring causality from time series data
5 versions - Latest release: 5 months ago - 37 downloads last month - 2 stars on GitHub - 2 maintainers
Top 3.7% on pypi.org
edt 2.4.0
Multi-Label Anisotropic Euclidean Distance Transform 3D
36 versions - Latest release: 3 months ago - 17 dependent packages - 42 dependent repositories - 8.5 thousand downloads last month - 217 stars on GitHub - 1 maintainer
poremks 1.0.7
for analytics on nanoporous molecular structures
8 versions - Latest release: about 5 years ago - 1 dependent repositories - 20 downloads last month - 217 stars on GitHub - 2 maintainers
Top 3.1% on pypi.org
connected-components-3d 3.14.1
Connected components on discrete and continuous multilabel 3D and 2D images. Handles 26, 18, and ...
59 versions - Latest release: 22 days ago - 14 dependent packages - 48 dependent repositories - 39.8 thousand downloads last month - 322 stars on GitHub - 1 maintainer
ndio 1.1.6
A Python library for open neuroscience data access and manipulation.
53 versions - Latest release: about 7 years ago - 3 dependent repositories - 15 downloads last month - 18 stars on GitHub - 2 maintainers
sofima 0.1
Scalable Optical Flow-based Image Montaging and Alignment
1 version - Latest release: about 2 years ago - 1 dependent repositories - 3 downloads last month - 47 stars on GitHub - 2 maintainers
Top 4.0% on pypi.org
cloud-volume 8.32.1
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on ...
325 versions - Latest release: 24 days ago - 16 dependent packages - 45 dependent repositories - 3.5 thousand downloads last month - 121 stars on GitHub - 1 maintainer
neuropull 0.2.0
A lightweight tool for pulling connectome networks and metadata.
3 versions - Latest release: over 1 year ago - 9 downloads last month - 2 stars on GitHub - 1 maintainer
catmaid-catnap 0.4.0
Experiments working with CATMAID and napari
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 11 downloads last month - 1 stars on GitHub - 1 maintainer
catpy 2020.9.3
Python client for the CATMAID API
4 versions - Latest release: over 3 years ago - 2 dependent repositories - 34 downloads last month - 4 stars on GitHub - 4 maintainers
connectomics 0.0.1.dev4
Common repository for connectomics-related libraries.
4 versions - Latest release: about 1 year ago - 1 dependent repositories - 96 downloads last month - 21 stars on GitHub - 1 maintainer
qsiprep-container 0.19.1
qsiprep is a non-DTI diffusion-weighted image pre-processing pipeline that is designed to provide...
48 versions - Latest release: 7 months ago - 1 dependent repositories - 114 downloads last month - 128 stars on GitHub - 1 maintainer
qsiprep 0.19.1
qsiprep builds workflows for preprocessing and reconstructing q-space images
50 versions - Latest release: 7 months ago - 1 dependent repositories - 104 downloads last month - 127 stars on GitHub - 1 maintainer
compresso 3.3.0
compresso algorithm variant based on work by Matejek et al.
14 versions - Latest release: about 1 month ago - 2 dependent packages - 9 dependent repositories - 3.79 thousand downloads last month - 4 stars on GitHub - 4 maintainers
fodnet 1.1.0
FOD-Net Reimplementation.
2 versions - Latest release: 7 months ago - 17 downloads last month - 16 stars on GitHub - 2 maintainers
ndexchange 1.0.10
Python 3 program to download data from NeuroData
11 versions - Latest release: about 5 years ago - 1 dependent repositories - 11 downloads last month - 4 stars on GitHub - 2 maintainers
Top 6.6% on pypi.org
netneurotools 0.2.4
A toolbox for network neuroscience
6 versions - Latest release: 3 months ago - 5 dependent packages - 10 dependent repositories - 613 downloads last month - 55 stars on GitHub - 5 maintainers
Related Keywords
python 15 neuroscience 9 biomedical-image-processing 8 connectome 7 volumetric-data 7 numpy 7 3d 6 brain 6 microscopy 6 2d 5 python3 5 tractography 4 image-processing 4 calcium 4 EM 4 algorithm 4 spatial 4 skeletonization 4 diffusion-mri 4 cpp 3 ccl 3 meshing 3 cloud 3 electron 3 electron-microscopy 3 database 3 neuroglancer 3 boss 3 compression 2 medical-imaging 2 anisotropic 2 1d 2 ocp.me 2 ocp 2 skeleton 2 euclidean-distance-transform 2 marching-parabolas 2 parallel 2 signed-distance-field 2 signed-distance-functions 2 euclidean-distance 2 neuroimaging 2 distance-transform 2 segmentation 2 anisotropy 2 connected-components-labeling 2 docker 2 downsample 2 downsampling 2 kubernetes 2 multi-resolution 2 visualization 2 mesh 2 meshes 2 pipelines 2 graph 2 network 2 aplbrain 2 bossdb 2 dotmotif 2 connected-components 2 ocpy 2 neurodata.io 2 neurodata 2 neuro 2 skeletons 2 microns 2 teasar 2 vf2 2 subgraph-isomorphism 2 timeseries 1 timeseries-data 1 causal-discovery 1 volumes 1 causal-inference 1 causality-algorithms 1 skeletonize 1 skeleton-extraction 1 neurons 1 extraction 1 neuronal-networks 1 chunked-image 1 large-image 1 matrix 1 microscopy-images 1 serverless 1 tensor 1 connectomes 1 data 1 dataset 1 networks 1 networks-biology 1 image 1 catpy 1 catmaid 1 neuron 1 image-annotation 1 deep-learning 1 fod 1 mrtrix3 1