pypi.org "connectomics" keyword
View the packages on the pypi.org package registry that are tagged with the "connectomics" keyword.
Top 3.7% on pypi.org
39 versions - Latest release: about 2 months ago - 24 dependent packages - 42 dependent repositories - 46.5 thousand downloads last month - 248 stars on GitHub - 1 maintainer
edt 3.0.0
Multi-Label Anisotropic Euclidean Distance Transform 3D39 versions - Latest release: about 2 months ago - 24 dependent packages - 42 dependent repositories - 46.5 thousand downloads last month - 248 stars on GitHub - 1 maintainer
poremks 1.0.7
for analytics on nanoporous molecular structures8 versions - Latest release: about 6 years ago - 1 dependent repositories - 320 downloads last month - 217 stars on GitHub - 1 maintainer
Top 1.4% on pypi.org
29 versions - Latest release: about 1 month ago - 46 dependent packages - 204 dependent repositories - 36.3 thousand downloads last month - 750 stars on GitHub - 4 maintainers
dipy 1.11.0
Diffusion MRI Imaging in Python29 versions - Latest release: about 1 month ago - 46 dependent packages - 204 dependent repositories - 36.3 thousand downloads last month - 750 stars on GitHub - 4 maintainers
Top 7.0% on pypi.org
138 versions - Latest release: about 20 hours ago - 9 dependent packages - 17 dependent repositories - 5.44 thousand downloads last month - 24 stars on GitHub - 3 maintainers
caveclient 7.7.1
A client for interacting with the Connectome Annotation Versioning Engine138 versions - Latest release: about 20 hours ago - 9 dependent packages - 17 dependent repositories - 5.44 thousand downloads last month - 24 stars on GitHub - 3 maintainers
Top 9.8% on pypi.org
25 versions - Latest release: 1 day ago - 3 dependent packages - 11 dependent repositories - 1.23 thousand downloads last month - 21 stars on GitHub - 2 maintainers
intern 1.4.2
Python SDK for interacting with neuroscience data via the Boss API.25 versions - Latest release: 1 day ago - 3 dependent packages - 11 dependent repositories - 1.23 thousand downloads last month - 21 stars on GitHub - 2 maintainers
feabas 2.1.1
A python library for stitching & alignment of connectome datasets using finite-element method.10 versions - Latest release: 3 days ago - 192 downloads last month - 16 stars on GitHub - 1 maintainer
fodnet 1.1.0
FOD-Net Reimplementation.2 versions - Latest release: over 1 year ago - 89 downloads last month - 17 stars on GitHub - 1 maintainer
diluvian 0.0.6
Flood filling networks for segmenting electron microscopy of neural tissue.6 versions - Latest release: about 7 years ago - 1 dependent repositories - 256 downloads last month - 23 stars on GitHub - 1 maintainer
Top 4.0% on pypi.org
351 versions - Latest release: 3 days ago - 19 dependent packages - 45 dependent repositories - 15.6 thousand downloads last month - 145 stars on GitHub - 1 maintainer
cloud-volume 12.2.0
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on ...351 versions - Latest release: 3 days ago - 19 dependent packages - 45 dependent repositories - 15.6 thousand downloads last month - 145 stars on GitHub - 1 maintainer
ocpy 0.5.3
Deprecated. Use ndio instead.10 versions - Latest release: over 9 years ago - 2 dependent repositories - 179 downloads last month - 1 maintainer
boss-ingest 0.12.0
Ingest client for the Boss17 versions - Latest release: almost 4 years ago - 1 dependent repositories - 600 downloads last month - 5 stars on GitHub - 2 maintainers
Top 9.6% on pypi.org
69 versions - Latest release: 25 days ago - 1 dependent package - 1 dependent repositories - 2.15 thousand downloads last month - 47 stars on GitHub - 1 maintainer
igneous-pipeline 4.28.2
Manage, Downsample, Mesh, Skeletonize, and Transform Neuroglancer Datasets69 versions - Latest release: 25 days ago - 1 dependent package - 1 dependent repositories - 2.15 thousand downloads last month - 47 stars on GitHub - 1 maintainer
ndio 1.1.6
A Python library for open neuroscience data access and manipulation.53 versions - Latest release: about 8 years ago - 3 dependent repositories - 730 downloads last month - 18 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
69 versions - Latest release: about 2 months ago - 22 dependent packages - 48 dependent repositories - 226 thousand downloads last month - 410 stars on GitHub - 1 maintainer
connected-components-3d 3.23.0
Connected components on discrete and continuous multilabel 3D and 2D images. Handles 26, 18, and ...69 versions - Latest release: about 2 months ago - 22 dependent packages - 48 dependent repositories - 226 thousand downloads last month - 410 stars on GitHub - 1 maintainer
Top 6.2% on pypi.org
8 versions - Latest release: about 1 year ago - 2 dependent packages - 5 dependent repositories - 2.49 thousand downloads last month - 223 stars on GitHub - 1 maintainer
skeletor 1.3.0
Python 3 library to extract skeletons from 3D meshes8 versions - Latest release: about 1 year ago - 2 dependent packages - 5 dependent repositories - 2.49 thousand downloads last month - 223 stars on GitHub - 1 maintainer
cits 1.3
CITS algorithm for inferring causality from time series data5 versions - Latest release: over 1 year ago - 132 downloads last month - 2 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
9 versions - Latest release: about 1 year ago - 1 dependent package - 10 dependent repositories - 1.52 thousand downloads last month - 60 stars on GitHub - 1 maintainer
grandiso 2.2.0
Performant subgraph isomorphism9 versions - Latest release: about 1 year ago - 1 dependent package - 10 dependent repositories - 1.52 thousand downloads last month - 60 stars on GitHub - 1 maintainer
connectomics 0.0.3
Common repository for connectomics-related libraries.5 versions - Latest release: about 2 months ago - 1 dependent repositories - 381 downloads last month - 41 stars on GitHub - 1 maintainer
sofima 0.1
Scalable Optical Flow-based Image Montaging and Alignment1 version - Latest release: about 3 years ago - 1 dependent repositories - 95 downloads last month - 68 stars on GitHub - 1 maintainer
Top 6.0% on pypi.org
21 versions - Latest release: 7 months ago - 3 dependent packages - 7 dependent repositories - 3.87 thousand downloads last month - 62 stars on GitHub - 2 maintainers
zmesh 1.8.0
Multilabel marching cubes and simplification of volumetric data.21 versions - Latest release: 7 months ago - 3 dependent packages - 7 dependent repositories - 3.87 thousand downloads last month - 62 stars on GitHub - 2 maintainers
Top 6.6% on pypi.org
7 versions - Latest release: 5 months ago - 6 dependent packages - 10 dependent repositories - 10.7 thousand downloads last month - 67 stars on GitHub - 4 maintainers
netneurotools 0.2.5
A toolbox for network neuroscience7 versions - Latest release: 5 months ago - 6 dependent packages - 10 dependent repositories - 10.7 thousand downloads last month - 67 stars on GitHub - 4 maintainers
compresso 3.3.3
compresso algorithm variant based on work by Matejek et al.17 versions - Latest release: about 2 months ago - 2 dependent packages - 9 dependent repositories - 8.98 thousand downloads last month - 4 stars on GitHub - 2 maintainers
synapticonn 0.0.1rc4
Inferring monosynaptic connections in neural circuits.4 versions - Latest release: 3 months ago - 145 downloads last month - 1 stars on GitHub - 1 maintainer
labelops 0.0.0
Operates on labeled neuronal meshes.1 version - Latest release: over 6 years ago - 1 dependent repositories - 51 downloads last month - 0 stars on GitHub - 1 maintainer
catmaid-catnap 0.4.0
Experiments working with CATMAID and napari3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 127 downloads last month - 2 stars on GitHub - 1 maintainer
neuropull 0.2.0
A lightweight tool for pulling connectome networks and metadata.3 versions - Latest release: over 2 years ago - 150 downloads last month - 2 stars on GitHub - 1 maintainer
catpy 2020.9.3
Python client for the CATMAID API4 versions - Latest release: over 4 years ago - 2 dependent repositories - 147 downloads last month - 4 stars on GitHub - 2 maintainers
ndexchange 1.0.10
Python 3 program to download data from NeuroData11 versions - Latest release: about 6 years ago - 1 dependent repositories - 208 downloads last month - 4 stars on GitHub - 2 maintainers
Top 6.8% on pypi.org
16 versions - Latest release: 10 months ago - 1 dependent package - 12 dependent repositories - 12.9 thousand downloads last month - 32 stars on GitHub - 1 maintainer
fpzip 1.2.4
Numpy wrapper for fpzip algorithm (P. Lindstrom & M. Isenburg, 2006)16 versions - Latest release: 10 months ago - 1 dependent package - 12 dependent repositories - 12.9 thousand downloads last month - 32 stars on GitHub - 1 maintainer
contact-points 0.0.7
Find contact points in a 3D Volume.7 versions - Latest release: about 4 years ago - 1 dependent repositories - 118 downloads last month - 6 stars on GitHub - 2 maintainers
connectome-interpreter 2.4.2
A tool for connectomics data interpretation52 versions - Latest release: about 1 month ago - 2.19 thousand downloads last month - 9 stars on GitHub - 1 maintainer
annotationframeworkclient 3.1.0
a service for interacting with the AnnotationFramework33 versions - Latest release: almost 4 years ago - 1 dependent package - 2 dependent repositories - 600 downloads last month - 25 stars on GitHub - 4 maintainers
dotmotif 0.15.0
Find graph motifs using simple, intuitive notation13 versions - Latest release: 8 months ago - 1 dependent package - 2 dependent repositories - 246 downloads last month - 84 stars on GitHub - 1 maintainer
Top 6.5% on pypi.org
62 versions - Latest release: about 2 months ago - 2 dependent packages - 12 dependent repositories - 8.13 thousand downloads last month - 145 stars on GitHub - 1 maintainer
kimimaro 5.0.0
Skeletonize densely labeled image volumes.62 versions - Latest release: about 2 months ago - 2 dependent packages - 12 dependent repositories - 8.13 thousand downloads last month - 145 stars on GitHub - 1 maintainer
Related Keywords
python
13
neuroscience
10
biomedical-image-processing
8
numpy
7
connectome
7
brain
6
volumetric-data
6
microscopy
6
3d
6
2d
5
python3
4
spatial
4
EM
4
algorithm
4
image-processing
4
calcium
4
electron-microscopy
3
skeletonization
3
boss
3
database
3
electron
3
cpp
3
microns
2
neuroimaging
2
segmentation
2
medical-imaging
2
meshing
2
graph
2
neuroglancer
2
ccl
2
mesh
2
meshes
2
skeleton
2
skeletons
2
compression
2
cloud
2
ocp.me
2
ocp
2
ocpy
2
neurodata.io
2
neurodata
2
neuro
2
tractography
2
aplbrain
2
teasar
2
bossdb
2
dotmotif
2
signed-distance-functions
2
signed-distance-field
2
parallel
2
subgraph-isomorphism
2
1d
2
connected-components
2
anisotropic
2
diffusion-mri
2
anisotropy
2
distance-transform
2
euclidean-distance
2
euclidean-distance-transform
2
vf2
2
marching-parabolas
2
denoising
1
causal-inference
1
hacktoberfest
1
brain-networks
1
causality-algorithms
1
neuronal-networks
1
brain-imaging
1
alignment-algorithm
1
jax
1
stitching-algorithm
1
4d
1
marching-cubes
1
marching-cubes-algorithm
1
ullman
1
network-biology
1
network-analysis
1
network
1
graphs
1
grand-iso
1
grand-graphs
1
mesh-generation
1
timeseries-data
1
mesh-processing
1
mesh-simplification
1
timeseries
1
network neuroscience
1
image-analysis
1
contact-points
1
neural network
1
motif
1
graph-database
1
graph-matching
1
motif-discovery
1
motifs
1
neo4j
1
networkx
1
query-language
1
centerline
1
medial-axis-transform
1