Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "digital-pathology" keyword
Top 6.7% on pypi.org
32 versions - Latest release: about 2 months ago - 6 dependent packages - 7 dependent repositories - 9.96 thousand downloads last month - 27 stars on GitHub - 1 maintainer
wsidicom 0.20.4
Tools for handling DICOM based whole scan images32 versions - Latest release: about 2 months ago - 6 dependent packages - 7 dependent repositories - 9.96 thousand downloads last month - 27 stars on GitHub - 1 maintainer
cucim-cu12 24.4.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...3 versions - Latest release: about 1 month ago - 2 dependent packages - 2.39 thousand downloads last month - 310 stars on GitHub - 2 maintainers
Top 2.7% on pypi.org
31 versions - Latest release: 7 months ago - 13 dependent packages - 43 dependent repositories - 7.21 thousand downloads last month - 310 stars on GitHub - 4 maintainers
cucim 23.10.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...31 versions - Latest release: 7 months ago - 13 dependent packages - 43 dependent repositories - 7.21 thousand downloads last month - 310 stars on GitHub - 4 maintainers
cucim-cu11 24.4.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...3 versions - Latest release: about 1 month ago - 238 downloads last month - 310 stars on GitHub - 2 maintainers
Top 8.1% on pypi.org
3 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 917 downloads last month - 99 stars on GitHub - 1 maintainer
torchstain 1.3.0
Stain normalization tools for histological analysis and computational pathology3 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 917 downloads last month - 99 stars on GitHub - 1 maintainer
Top 7.7% on pypi.org
25 versions - Latest release: 5 months ago - 1 dependent package - 1 dependent repositories - 1.03 thousand downloads last month - 323 stars on GitHub - 2 maintainers
tiatoolbox 1.5.1
Computational pathology toolbox developed by TIA Centre.25 versions - Latest release: 5 months ago - 1 dependent package - 1 dependent repositories - 1.03 thousand downloads last month - 323 stars on GitHub - 2 maintainers
Top 8.0% on pypi.org
33 versions - Latest release: 3 months ago - 10 dependent packages - 1 dependent repositories - 21.8 thousand downloads last month - 74 stars on GitHub - 1 maintainer
tiffslide 2.4.0
tifffile-based drop-in replacement for openslide-python33 versions - Latest release: 3 months ago - 10 dependent packages - 1 dependent repositories - 21.8 thousand downloads last month - 74 stars on GitHub - 1 maintainer
Top 7.7% on pypi.org
15 versions - Latest release: 3 months ago - 2 dependent packages - 3 dependent repositories - 252 downloads last month - 97 stars on GitHub - 2 maintainers
paquo 0.7.2
library for interacting with QuPath15 versions - Latest release: 3 months ago - 2 dependent packages - 3 dependent repositories - 252 downloads last month - 97 stars on GitHub - 2 maintainers
Top 7.3% on pypi.org
20 versions - Latest release: 3 months ago - 1 dependent package - 2 dependent repositories - 876 downloads last month - 340 stars on GitHub - 3 maintainers
histolab 0.7.0 💰
Python library for Digital Pathology Image Processing20 versions - Latest release: 3 months ago - 1 dependent package - 2 dependent repositories - 876 downloads last month - 340 stars on GitHub - 3 maintainers
wsinfer-mil 0.1.0
Run specimen-level inference on whole slide images.1 version - Latest release: 2 months ago - 19 downloads last month - 0 stars on GitHub - 1 maintainer
deeperhistreg 1.0.1
DeeperHistReg Framework - To Register WSI Images1 version - Latest release: 3 months ago - 17 downloads last month - 1 stars on GitHub - 1 maintainer
cellseg-gsontools 0.1.6
Toolbelt for merging and extracting features from geojson masks.8 versions - Latest release: about 1 month ago - 119 downloads last month - 8 stars on GitHub - 1 maintainer
cytomine-pims 1.0.0
Cytomine Python Image Server5 versions - Latest release: 6 months ago - 24 downloads last month - 27 stars on GitHub - 1 maintainer
pavo 0.3.0
PAthological Visualisation Obsession2 versions - Latest release: about 1 year ago - 17 downloads last month - 5 stars on GitHub - 1 maintainer
pado 0.12.0
cloud-native dataset library for accessing histopathological datasets4 versions - Latest release: about 1 year ago - 1 dependent package - 25 downloads last month - 17 stars on GitHub - 1 maintainer
viewmask 0.3.1
A Python package and CLI to view XML annotations and NumPy masks.23 versions - Latest release: almost 3 years ago - 1 dependent repositories - 193 downloads last month - 3 stars on GitHub - 1 maintainer
slideseg 1.1
segments whole slide images into usable image chips and masks for deep learning1 version - Latest release: over 6 years ago - 1 dependent repositories - 14 downloads last month - 78 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
18 versions - Latest release: about 2 months ago - 1 dependent repositories - 311 downloads last month - 402 stars on GitHub - 1 maintainer
pyfast 4.9.2
Python bindings of FAST - a framework for high performance medical image computing and visualizat...18 versions - Latest release: about 2 months ago - 1 dependent repositories - 311 downloads last month - 402 stars on GitHub - 1 maintainer
pathml 2.1.1
Tools for computational pathology15 versions - Latest release: 12 months ago - 1 dependent repositories - 283 downloads last month - 360 stars on GitHub - 2 maintainers
dogsled 0.0.5
Macenko medical slide normalisation5 versions - Latest release: over 2 years ago - 1 dependent repositories - 29 downloads last month - 3 stars on GitHub - 1 maintainer
opentile 0.12.0
Read tiles from wsi-TIFF files22 versions - Latest release: 3 months ago - 1 dependent package - 2 dependent repositories - 803 downloads last month - 13 stars on GitHub - 1 maintainer
torch-staintools 1.0.4
GPU-accelerated stain normalization and augmentation5 versions - Latest release: 4 months ago - 80 downloads last month - 10 stars on GitHub - 1 maintainer
cellseg_models_pytorch 0.1.24
Python library for 2D cell/nuclei instance segmentation models written with PyTorch.24 versions - Latest release: 7 months ago - 246 downloads last month - 58 stars on GitHub - 1 maintainer
Related Keywords
python
10
computer-vision
5
histopathology
5
image-analysis
5
image-processing
5
medical-imaging
5
microscopy
5
deep-learning
4
pytorch
4
whole-slide-image
4
computational-pathology
4
stain-normalization
3
whole-slide-imaging
3
segmentation
3
nvidia
3
multidimensional-image-processing
3
image-data
3
gpu
3
cuda
3
tissue-segmentation
3
machine-learning
2
cell-segmentation
2
visualization
2
nuclei-segmentation
2
pathology
2
research
2
whole slide image
2
digital pathology
2
dicom
2
annotations
2
stain-augmentation
1
reinhard
1
pytorch-staintools
1
macenko
1
gpu-acceleration
1
tiff
1
pathology-image
1
streaming
1
ultrasound
1
spatial-transcriptomics
1
pathml
1
biomedical-image-processing
1
fluorescence-microscopy-imaging
1
stain-separation
1
staintools
1
vahadane
1
cell segmentation
1
nuclei segmentation
1
pytorch-lightning
1
accelerate
1
ai
1
cellpose
1
hovernet
1
ml
1
omnipose
1
panoptic-segmentation
1
stardist
1
timm
1
numpy
1
tensorflow
1
tiatoolbox
1
cell-classification
1
medical-image-analysis
1
tissue-analysis
1
qupath
1
bioinformatics
1
biology
1
data-science
1
digital-pathology-data
1
hacktoberfest
1
science-research
1
wsi
1
multiple-instance-learning
1
image-registration
1
wsi-images
1
wsi-registration
1
feature-extraction
1
morphological-analysis
1
spatial-data-analysis
1
computational-biology
1
image-segmentation
1
convolutional-neural-networks
1
semantic-segmentation
1
gpu-computing
1
opencl
1
parallel-computing
1