Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "medical-imaging" keyword

Top 4.8% on pypi.org
lungmask 0.2.20
Package for automated lung segmentation in CT
9 versions - Latest release: 2 months ago - 1 dependent package - 7 dependent repositories - 1.56 thousand downloads last month - 613 stars on GitHub - 2 maintainers
rivuletpy 0.3.0
Rivuletpy: a powerful tool to automatically trace single neurons from 3D light microscopic images.
14 versions - Latest release: over 1 year ago - 1 dependent repositories - 27 downloads last month - 64 stars on GitHub - 1 maintainer
tfcaidm 0.0.0a4
Deep learning pipeline for medical imaging
4 versions - Latest release: over 2 years ago - 1 dependent repositories - 15 downloads last month - 1 stars on GitHub - 1 maintainer
mrqy 0.0.3
MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance i...
3 versions - Latest release: 3 months ago - 37 downloads last month - 88 stars on GitHub - 1 maintainer
cucim-cu11 24.4.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...
4 versions - Latest release: about 2 months ago - 389 downloads last month - 316 stars on GitHub - 2 maintainers
Top 2.7% on pypi.org
cucim 23.10.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...
31 versions - Latest release: 8 months ago - 13 dependent packages - 43 dependent repositories - 6.6 thousand downloads last month - 316 stars on GitHub - 4 maintainers
cucim-cu12 24.4.0
cuCIM - an extensible toolkit designed to provide GPU accelerated I/O, computer vision & image pr...
4 versions - Latest release: about 2 months ago - 2 dependent packages - 3.56 thousand downloads last month - 316 stars on GitHub - 2 maintainers
nekton 0.2.6
A python package for DICOM to NifTi and NifTi to DICOM-SEG and GSPS conversion
13 versions - Latest release: 9 months ago - 1 dependent repositories - 40 downloads last month - 7 stars on GitHub - 3 maintainers
dartseg 1.0.0
Package for Brain Segmentation
1 version - Latest release: over 4 years ago - 1 dependent repositories - 11 downloads last month - 65 stars on GitHub - 2 maintainers
Top 3.9% on pypi.org
neurite 0.2
Neural Networks Toolbox for Medical Imaging
2 versions - Latest release: about 2 years ago - 1 dependent package - 17 dependent repositories - 5.54 thousand downloads last month - 316 stars on GitHub - 1 maintainer
modelhub-ai 0.0.6
A collection of deep learning models with a unified API.
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 22 downloads last month - 66 stars on GitHub - 2 maintainers
napari-itk-io 0.3.0
File IO with itk for napari
4 versions - Latest release: about 1 year ago - 3 dependent packages - 2 dependent repositories - 71 downloads last month - 7 stars on GitHub - 1 maintainer
itk_napari_conversion 0.3.1
Convert between itk and napari data structures.
4 versions - Latest release: about 3 years ago - 3 dependent repositories - 111 downloads last month - 3 stars on GitHub - 2 maintainers
Top 5.6% on pypi.org
staintools 2.1.2
A package for tissue image stain normalization, augmentation and more.
23 versions - Latest release: about 5 years ago - 11 dependent repositories - 1.58 thousand downloads last month - 304 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
miutil 0.12.0
Medical imaging utilities for the AMYPAD and NiftyPET projects
25 versions - Latest release: about 1 year ago - 1 dependent repositories - 8.7 thousand downloads last month - 0 stars on GitHub - 2 maintainers
itk-gpuimagefilterbase 0.2.0 πŸ’°
Base classes for ITK image filters accelerated with OpenCL.
1 version - Latest release: over 4 years ago - 1 dependent repositories - 18 downloads last month - 1,336 stars on GitHub - 1 maintainer
Top 1.1% on pypi.org
itk 5.3.0 πŸ’°
ITK is an open-source toolkit for multidimensional image analysis
51 versions - Latest release: over 1 year ago - 83 dependent packages - 220 dependent repositories - 39.8 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
Top 1.5% on pypi.org
itk-filtering 5.3.0 πŸ’°
ITK is an open-source toolkit for multidimensional image analysis
39 versions - Latest release: over 1 year ago - 13 dependent packages - 73 dependent repositories - 44.4 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
Top 1.9% on pypi.org
itk-registration 5.3.0 πŸ’°
ITK is an open-source toolkit for multidimensional image analysis
44 versions - Latest release: over 1 year ago - 6 dependent packages - 51 dependent repositories - 38.2 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
Top 1.4% on pypi.org
itk-core 5.3.0 πŸ’°
ITK is an open-source toolkit for multidimensional image analysis
42 versions - Latest release: over 1 year ago - 11 dependent packages - 78 dependent repositories - 45.8 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
Top 1.9% on pypi.org
itk-segmentation 5.3.0 πŸ’°
ITK is an open-source toolkit for multidimensional image analysis
50 versions - Latest release: over 1 year ago - 4 dependent packages - 51 dependent repositories - 38.8 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
Top 1.5% on pypi.org
itk-io 5.3.0 πŸ’°
ITK is an open-source toolkit for multidimensional image analysis
50 versions - Latest release: over 1 year ago - 18 dependent packages - 58 dependent repositories - 39 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
Top 1.6% on pypi.org
itk-numerics 5.3.0 πŸ’°
ITK is an open-source toolkit for multidimensional image analysis
33 versions - Latest release: over 1 year ago - 7 dependent packages - 71 dependent repositories - 44.2 thousand downloads last month - 1,336 stars on GitHub - 4 maintainers
itk-gpusmoothing 0.2.0 πŸ’°
Common smoothing filters accelerated with OpenCL.
1 version - Latest release: over 4 years ago - 1 dependent repositories - 12 downloads last month - 1,336 stars on GitHub - 1 maintainer
itk-gpucommon 0.2.0 πŸ’°
Core classes for ITK filters accelerated with OpenCL.
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 46 downloads last month - 1,336 stars on GitHub - 1 maintainer
itk-gpufinitedifference 0.2.0 πŸ’°
Base classes for ITK finite difference filters accelerated with OpenCL.
1 version - Latest release: over 4 years ago - 1 dependent repositories - 11 downloads last month - 1,336 stars on GitHub - 1 maintainer
sirf 1.0.0
CCP PET-MR SIRF
1 version - Latest release: about 6 years ago - 1 dependent repositories - 10 downloads last month - 57 stars on GitHub - 1 maintainer
pydeform 0.5.1
Efficient dense deformable image registration
6 versions - Latest release: over 4 years ago - 1 dependent repositories - 56 downloads last month - 22 stars on GitHub - 1 maintainer
amypad-core 0.0.3
Core utilities for the AMYPAD project
4 versions - Latest release: over 3 years ago - 20 downloads last month - 0 stars on GitHub - 2 maintainers
fodnet 1.1.0
FOD-Net Reimplementation.
2 versions - Latest release: 8 months ago - 8 downloads last month - 17 stars on GitHub - 1 maintainer
pymedio 0.2.14
read arbitrary medical images in python
25 versions - Latest release: about 1 year ago - 1 dependent package - 2 dependent repositories - 553 downloads last month - 6 stars on GitHub - 1 maintainer
amid 0.13.0
A curated list of medical imaging datasets with unified interfaces
18 versions - Latest release: 3 months ago - 1 dependent repositories - 76 downloads last month - 33 stars on GitHub - 1 maintainer
biapy 3.4.3
BiaPy: Bioimage analysis pipelines in Python
30 versions - Latest release: 24 days ago - 370 downloads last month - 76 stars on GitHub - 1 maintainer
paros 1.0.0
PARaxial Optical fundus Scaling (PAROS)
2 versions - Latest release: 5 months ago - 19 downloads last month - 2 stars on GitHub - 3 maintainers
radifox 1.1.0
RADIFOX is the RADiological Image File Ontology eXtension, a Python package for the organization ...
18 versions - Latest release: about 1 month ago - 483 downloads last month - 2 stars on GitHub - 1 maintainer
miqa-python-client 0.1.2
A python library for interacting with a MIQA API
3 versions - Latest release: almost 2 years ago - 5 downloads last month - 30 stars on GitHub - 1 maintainer
coexist 0.3.2
Learning simulation parameters from experimental data, from the micro to the macro, from the lapt...
4 versions - Latest release: 12 months ago - 1 dependent repositories - 20 downloads last month - 13 stars on GitHub - 1 maintainer
cornerstone-widget 0.0.1rc1
A Jupyter Widget for the Cornerstone Medical Image Viewing Library
1 version - Latest release: over 5 years ago - 18 downloads last month - 25 stars on GitHub - 1 maintainer
diffdrr 0.3.12
Auto-differentiable digitally reconstructed radiographs in PyTorch
21 versions - Latest release: 3 months ago - 1 dependent package - 468 downloads last month - 109 stars on GitHub - 1 maintainer
moosez 2.4.9
An AI-inference engine for 3D clinical and preclinical whole-body segmentation tasks
119 versions - Latest release: about 1 month ago - 2 dependent packages - 1 dependent repositories - 3.8 thousand downloads last month - 133 stars on GitHub - 2 maintainers
mrainet 0.1.0
MR acquisition-invariant network.
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 10 downloads last month - 5 stars on GitHub - 1 maintainer
django-large-image 0.10.0
Dynamic tile server in Django built on top of large-image (and GDAL)
26 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 2.28 thousand downloads last month - 56 stars on GitHub - 3 maintainers
medigan 1.0.0
medigan is a modular open-source Python library that provides an interface to multiple generative...
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 89 downloads last month - 114 stars on GitHub - 2 maintainers
Top 1.4% on pypi.org
dipy 1.9.0
Diffusion MRI Imaging in Python
27 versions - Latest release: 3 months ago - 46 dependent packages - 204 dependent repositories - 24.6 thousand downloads last month - 651 stars on GitHub - 4 maintainers
mda-learn 0.1.1
Manifold Discovery and Analysis (MDA) algorithm for deep learning feature space analysis.
2 versions - Latest release: 6 months ago - 22 downloads last month - 11 stars on GitHub - 1 maintainer
radvis 0.3.0
A visualization tool for medical images
11 versions - Latest release: 12 months ago - 25 downloads last month - 4 stars on GitHub - 1 maintainer
atommic 1.0.1
Advanced Toolbox for Multitask Medical Imaging Consistency (ATOMMIC)
2 versions - Latest release: about 1 month ago - 72 downloads last month - 1 stars on GitHub - 1 maintainer
frd-score 0.0.1
Package for calculating FrΓ©chet Radiomics Distance (FRD)
1 version - Latest release: about 1 month ago - 79 downloads last month - 0 stars on GitHub - 1 maintainer
csg-dicoms-anonymizer 1.4.2
Robust and easy to use generic dicoms anonymizer with demographics csv spreadsheet anonymization ...
2 versions - Latest release: over 6 years ago - 7 downloads last month - 2 stars on GitHub - 1 maintainer
medical-data 0.2.0 πŸ’°
Helpful data utilities for deep learning in medical image analysis/medical image computing
2 versions - Latest release: about 1 year ago - 16 downloads last month - 1 stars on GitHub - 1 maintainer
radtorch 0.1.2 πŸ’°
RADTorch, The Radiology Machine Learning Tool Kit
1 version - Latest release: over 4 years ago - 1 dependent repositories - 15 downloads last month - 18 stars on GitHub - 1 maintainer
orthanc-rest-client 0.5.7
REST client for Orthanc DICOM servers
15 versions - Latest release: over 4 years ago - 1 dependent repositories - 426 downloads last month - 18 stars on GitHub - 1 maintainer
Top 4.3% on pypi.org
platipy 0.7.1
Processing Library and Analysis Toolkit for Medical Imaging in Python
19 versions - Latest release: 8 months ago - 3 dependent packages - 9 dependent repositories - 741 downloads last month - 85 stars on GitHub - 1 maintainer
nipet 2.2.0
CUDA-accelerated Python utilities for high-throughput PET/MR image reconstruction and analysis
28 versions - Latest release: over 1 year ago - 1 dependent repositories - 123 downloads last month - 28 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
pyfast 4.9.2
Python bindings of FAST - a framework for high performance medical image computing and visualizat...
18 versions - Latest release: 3 months ago - 1 dependent repositories - 196 downloads last month - 402 stars on GitHub - 1 maintainer
medpicpy 1.0.4
A package to simplify loading medical imaging datasets.
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 33 downloads last month - 2 stars on GitHub - 1 maintainer
mednoise 1.2.4
mednoise is a python package that contains algorithms to handle and edit large amounts of image-b...
1 version - Latest release: almost 3 years ago - 1 dependent repositories - 12 downloads last month - 2 stars on GitHub - 1 maintainer
beren 0.7.1
REST client for Orthanc DICOM servers
5 versions - Latest release: almost 3 years ago - 3 dependent repositories - 812 downloads last month - 18 stars on GitHub - 1 maintainer
Top 7.5% on pypi.org
unet 0.7.7
PyTorch implementation of 2D and 3D U-Net
16 versions - Latest release: over 3 years ago - 6 dependent repositories - 1.56 thousand downloads last month - 134 stars on GitHub - 1 maintainer
mridc 0.2.0
Data Consistency for Magnetic Resonance Imaging
4 versions - Latest release: over 1 year ago - 1 dependent repositories - 37 downloads last month - 37 stars on GitHub - 1 maintainer
histoprep 2.0.5
Read and process histological slide images with python!
55 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 343 downloads last month - 15 stars on GitHub - 1 maintainer
medimages4tests 0.3.3
Generates dummy medical image data with realistic headers to be used in image handling tests
7 versions - Latest release: 7 months ago - 9 dependent packages - 1 dependent repositories - 1.43 thousand downloads last month - 0 stars on GitHub - 1 maintainer
medical-dl-utils 0.1.6 πŸ’°
Helpful utilities for deep learning in medical image analysis/medical image computing
9 versions - Latest release: almost 2 years ago - 1 dependent repositories - 38 downloads last month - 1 stars on GitHub - 1 maintainer
pept 0.5.1
A Python library that unifies Positron Emission Particle Tracking (PEPT) research, including trac...
16 versions - Latest release: over 1 year ago - 2 dependent repositories - 189 downloads last month - 12 stars on GitHub - 1 maintainer
Top 7.2% on pypi.org
nobrainer 1.2.1
A framework for developing neural network models for 3D image processing.
18 versions - Latest release: 2 months ago - 1 dependent package - 4 dependent repositories - 116 downloads last month - 138 stars on GitHub - 3 maintainers
train-unet 0.0.2
To use U-net architecture and train models for medical imaging at ease.
6 versions - Latest release: almost 4 years ago - 1 dependent repositories - 35 downloads last month - 6 stars on GitHub - 1 maintainer
spyrit 2.2.0
Toolbox for deep image reconstruction
12 versions - Latest release: 8 months ago - 1 dependent repositories - 39 downloads last month - 29 stars on GitHub - 2 maintainers
dicomrttool 2.1.4
Services for reading dicom files, RT structures, and dose files, as well as tools for converting ...
76 versions - Latest release: 3 months ago - 1 dependent repositories - 276 downloads last month - 80 stars on GitHub - 1 maintainer
django-dicom 0.0.4
A simple Django app to manage DICOM files.
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 36 downloads last month - 6 stars on GitHub - 1 maintainer
delia 1.2.7
DICOM Extraction for Large-scale Image Analysis (DELIA).
33 versions - Latest release: 5 months ago - 1 dependent package - 67 downloads last month - 12 stars on GitHub - 1 maintainer
lagomorph 1.0.26
Image Registration and Computational Anatomy in PyTorch
14 versions - Latest release: about 3 years ago - 1 dependent repositories - 26 downloads last month - 19 stars on GitHub - 1 maintainer
innereye-dicom-rt 1.1.0
InnerEye DICOM to Nifti conversion functions
4 versions - Latest release: over 1 year ago - 2 dependent repositories - 33 downloads last month - 8 stars on GitHub - 3 maintainers
biom3d 0.0.38
Biom3d. Framework for easy-to-use biomedical image segmentation.
39 versions - Latest release: 2 months ago - 201 downloads last month - 17 stars on GitHub - 1 maintainer
niftynet 0.6.0
An open-source convolutional neural networks platform for research in medical image analysis and ...
11 versions - Latest release: over 4 years ago - 10 dependent repositories - 114 downloads last month - 1,356 stars on GitHub - 2 maintainers
cycpd 0.0.1
Numpy + Cython Implementation of the Coherent Point Drift Algorithm
10 versions - Latest release: almost 4 years ago - 1 dependent package - 2 dependent repositories - 2.07 thousand downloads last month - 22 stars on GitHub - 1 maintainer
Top 5.0% on pypi.org
monailabel 0.8.1
Active Learning Toolkit for Healthcare Imaging
50 versions - Latest release: 7 months ago - 4 dependent repositories - 2.35 thousand downloads last month - 554 stars on GitHub - 3 maintainers
mist-medical 0.4.7a0
MIST is a simple, fully automated framework for 3D medical imaging segmentation.
15 versions - Latest release: 27 days ago - 188 downloads last month - 17 stars on GitHub - 1 maintainer
visualqc 0.6.6
Assistive tool for the quality control of neuroimaging data
30 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 283 downloads last month - 72 stars on GitHub - 1 maintainer
nitrain 0.3.0
Train medical imaging AI models locally or in the cloud with any framework
5 versions - Latest release: about 2 months ago - 127 downloads last month - 1 stars on GitHub - 1 maintainer
fuse-med-ml 0.3.0
A python framework accelerating ML based discovery in the medical field by encouraging code reuse...
22 versions - Latest release: over 1 year ago - 1 dependent repositories - 321 downloads last month - 126 stars on GitHub - 1 maintainer
torchregister 0.2.2
3D image registration methods for PyTorch.
5 versions - Latest release: about 1 year ago - 32 downloads last month - 8 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
monailabel-weekly 0.5.dev2340
Active Learning Toolkit for Healthcare Imaging
114 versions - Latest release: 8 months ago - 2 dependent repositories - 832 downloads last month - 554 stars on GitHub - 3 maintainers
etab 0.1.0
ETAB: A Benchmark Suite for Visual Representation Learning in Echocardiography
1 version - Latest release: almost 2 years ago - 11 downloads last month - 21 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
mypy-boto3-medical-imaging 1.34.106
Type annotations for boto3.HealthImaging 1.34.106 service generated with mypy-boto3-builder 7.24.0
11 versions - Latest release: 25 days ago - 2 dependent packages - 1 dependent repositories - 151 thousand downloads last month - 5 stars on GitHub - 1 maintainer
clinicadl 1.6.1
Framework for the reproducible processing of neuroimaging data with deep learning methods
33 versions - Latest release: 2 months ago - 1 dependent repositories - 148 downloads last month - 152 stars on GitHub - 4 maintainers
som 0.2.3 πŸ’°
stanford open modules for python
21 versions - Latest release: over 6 years ago - 1 dependent repositories - 168 downloads last month - 7 stars on GitHub - 1 maintainer
ctheaddeformation 0.1.4
Perform Realistic Head Deformations
5 versions - Latest release: over 1 year ago - 42 downloads last month - 0 stars on GitHub - 1 maintainer
bqapi-ucsb 1.0.1
An ML Platform for storing, analyzing, and visualizing your data all in the browser.
2 versions - Latest release: about 2 years ago - 1 dependent repositories - 14 downloads last month - 34 stars on GitHub - 1 maintainer
monai-app-sdk 0.0.0
A framework and associated tools to design, verify and analyze performance of MONAI apps
1 version - Latest release: almost 3 years ago - 1 dependent repositories - 10 downloads last month - 83 stars on GitHub - 1 maintainer
pyautoscoper 2.0.0
A Python client library for the Autoscoper API
7 versions - Latest release: 11 months ago - 60 downloads last month - 7 stars on GitHub - 2 maintainers
indigo 1.0.5
Fast linear operators for image reconstruction.
6 versions - Latest release: about 6 years ago - 3 dependent repositories - 90 downloads last month - 12 stars on GitHub - 1 maintainer
picai-prep 2.1.6
PICAI Preprocessing
9 versions - Latest release: about 1 year ago - 2 dependent packages - 1 dependent repositories - 715 downloads last month - 14 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
torchstain 1.3.0
Stain normalization tools for histological analysis and computational pathology
3 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 731 downloads last month - 102 stars on GitHub - 1 maintainer
nii2png 0.3.0 πŸ’°
A lightweight neuroimaging .nii to .png converter
2 versions - Latest release: about 5 years ago - 1 dependent repositories - 130 downloads last month - 114 stars on GitHub - 1 maintainer
pilab-regis 0.0.7
Implementation of regis
7 versions - Latest release: 9 months ago - 42 downloads last month - 0 stars on GitHub - 1 maintainer
pyradiomics-fix 3.0.1.dev4
Radiomics features library for python
4 versions - Latest release: over 1 year ago - 2 dependent packages - 108 downloads last month - 1,082 stars on GitHub - 1 maintainer
spm12 2.2.0
Statistical Parametric Mapping
17 versions - Latest release: 4 months ago - 1 dependent repositories - 256 downloads last month - 6 stars on GitHub - 2 maintainers
quicknat-pytorch 1.3
QuickNAT, Brain segmentation.
3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 45 downloads last month - 99 stars on GitHub - 1 maintainer
ctviewer 1.0.0
Interactive utility to view 3D CT images in ipython notebooks
1 version - Latest release: about 3 years ago - 1 dependent repositories - 18 downloads last month - 14 stars on GitHub - 1 maintainer
seg-metrics 1.1.6
A package to compute different segmentation metrics for 2D/3D medical images.
32 versions - Latest release: 7 months ago - 1 dependent repositories - 1.14 thousand downloads last month - 87 stars on GitHub - 1 maintainer