pypi.org : vsnpdev
USDA APHIS Veterinary Services (VS) Mycobacterium tuberculosis complex, mainly M. bovis, and Brucella sp. SNP pipeline. Genotyping from whole genome sequence (WGS) outputting BAM, VCF, SNP tables and phylogentic trees.
Registry
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Source
- Documentation
- JSON
purl: pkg:pypi/vsnpdev
Keywords:
analysis-pipeline
, bam-files
, brucella
, freebayes
, genomics
, high
, high-throughput-sequencing
, mycobacterium-tuberculosis-complex
, phylogenetics
, pipeline
, snp
, snps
, tuberculosis
, vcf
, wgs
, whole-genome-sequencing
License: MIT
Latest release: over 5 years ago
First release: over 6 years ago
Dependent repositories: 1
Downloads: 29 last month
Stars: 21 on GitHub
Forks: 12 on GitHub
See more repository details: repos.ecosyste.ms
Last synced: about 17 hours ago