Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "wgs" keyword
wgse-ng 1.0.0a3
Whole Genome Sequencing data manipulation tool16 versions - Latest release: 14 days ago - 1.66 thousand downloads last month - 2 stars on GitHub - 1 maintainer
resblaster 0.4.0
find antimcirobial resistance genes on genomes31 versions - Latest release: about 1 month ago - 1 dependent repositories - 114 downloads last month - 4 stars on GitHub - 1 maintainer
cb-platon 1.4.0
Platon: identification and characterization of bacterial plasmid contigs from short-read draft as...10 versions - Latest release: almost 4 years ago - 1 dependent repositories - 50 downloads last month - 98 stars on GitHub - 1 maintainer
ore 0.2.1
Associate outliers with rare variation34 versions - Latest release: over 5 years ago - 1 dependent repositories - 290 downloads last month - 1 stars on GitHub - 1 maintainer
cvmblaster 1.0.1
find antimcirobial resistance genes33 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 122 downloads last month - 0 stars on GitHub - 1 maintainer
cvmmlst 0.3.2
python mlst analysis tool20 versions - Latest release: about 1 month ago - 177 downloads last month - 0 stars on GitHub - 1 maintainer
gis.geotransforms 0.1dev
Coordinate transforms between standards like UTM, MGRS, WGS1 version - Latest release: 10 months ago - 2 dependent repositories - 1 maintainer
restidy 0.2.8
resfinder result tidy18 versions - Latest release: about 2 years ago - 1 dependent repositories - 155 downloads last month - 0 stars on GitHub - 1 maintainer
cyrius 1.1.1
WGS-based CYP2D6 caller1 version - Latest release: 8 months ago - 36 downloads last month - 44 stars on GitHub - 1 maintainer
phageboost 0.1.7
a Fast Prophage and Phage Predictor5 versions - Latest release: over 3 years ago - 1 dependent repositories - 56 downloads last month - 32 stars on GitHub - 1 maintainer
campycps 1.0.3
Campylobacter CPS relevant gene analysis tool4 versions - Latest release: 5 months ago - 33 downloads last month - 0 stars on GitHub - 1 maintainer
pointblaster 0.2.4
find point mutation in assembled genomes14 versions - Latest release: 9 months ago - 93 downloads last month - 0 stars on GitHub - 1 maintainer
cvmcgmlst 0.1.7
cgMLST analysis tool7 versions - Latest release: about 1 year ago - 51 downloads last month - 0 stars on GitHub - 1 maintainer
vsnpdev 0.0.21
USDA APHIS Veterinary Services (VS) Mycobacterium tuberculosis complex, mainly M. bovis, and Bruc...19 versions - Latest release: over 4 years ago - 1 dependent repositories - 95 downloads last month - 18 stars on GitHub - 1 maintainer
referenceseeker 1.8.0
ReferenceSeeker: rapid determination of appropriate reference genomes.12 versions - Latest release: over 2 years ago - 1 dependent repositories - 130 downloads last month - 85 stars on GitHub - 1 maintainer
mgrspy 0.3.1
Convert WGS84 coordinates to MGRS and back6 versions - Latest release: over 4 years ago - 1 dependent repositories - 167 downloads last month - 1 maintainer
tadrep 0.9.2
TaDRep: Targeted Detection and Reconstruction of Plasmids4 versions - Latest release: 25 days ago - 1 dependent repositories - 105 downloads last month - 19 stars on GitHub - 1 maintainer
metadownload 0.1.3
python mlst analysis tool4 versions - Latest release: over 1 year ago - 31 downloads last month - 1 maintainer
Related Keywords
bioinformatics
5
pip
4
ngs
4
blastn
3
bacteria
3
microbiology
3
mgrs
2
gis
2
mlst
2
pubmlst
2
resfinder
2
whole-genome-sequencing
2
plasmids
2
metagenomics
1
Campylobacter CPS
1
pointmutation
1
cgmlst
1
analysis-pipeline
1
bam-files
1
brucella
1
freebayes
1
genomics
1
high
1
high-throughput-sequencing
1
mycobacterium-tuberculosis-complex
1
phylogenetics
1
pipeline
1
snp
1
snps
1
tuberculosis
1
vcf
1
microbial genomics
1
ani
1
mash
1
reference-genomes
1
refseq
1
coordinate
1
conversion
1
contigs
1
rnaseq
1
outliers
1
rare_variants
1
rna
1
dna
1
cli
1
expression-analysis
1
outlier-detection
1
python3
1
rna-seq
1
assembly
1
amr
1
science
1
microarray
1
georeference
1
geocoordinates
1
geo
1
genetics
1
CYP2D6
1
cyp2d6
1
pharmacogenomics
1
machine learning
1
phage
1
prophage
1