pypi.org "snps" keyword
View the packages on the pypi.org package registry that are tagged with the "snps" keyword.
mutation-simulator 3.0.2
A tool for simulating random mutations in any genome3 versions - Latest release: over 1 year ago - 1 dependent repositories - 48 downloads last month - 42 stars on GitHub - 1 maintainer
snpio 1.6.0
SNPio is a Python API for population genetic file processing, filtering, and analysis. It is desi...85 versions - Latest release: 4 days ago - 1 dependent package - 2.14 thousand downloads last month - 2 stars on GitHub - 1 maintainer
mgkit 0.5.8
Metagenomics Framework30 versions - Latest release: almost 4 years ago - 2 dependent repositories - 70 downloads last month - 17 stars on GitHub - 1 maintainer
pygeno 2.0.0
A python package for Personalized Genomics and Proteomics18 versions - Latest release: over 5 years ago - 1 dependent repositories - 28 downloads last month - 319 stars on GitHub - 2 maintainers
Top 8.8% on pypi.org
56 versions - Latest release: 9 months ago - 2 dependent packages - 13 dependent repositories - 1.79 thousand downloads last month - 22 stars on GitHub - 4 maintainers
pysnptools 0.5.14
PySnpTools56 versions - Latest release: 9 months ago - 2 dependent packages - 13 dependent repositories - 1.79 thousand downloads last month - 22 stars on GitHub - 4 maintainers
snpmatch 4.0.0
A simple python library to identify the most likely strain given the SNPs for a sample14 versions - Latest release: over 5 years ago - 1 dependent repositories - 42 downloads last month - 9 stars on GitHub - 1 maintainer
virheat 0.7.4
virHEAT creates a heatmap from vcf files and maps positions on to a reference genome.15 versions - Latest release: 3 months ago - 36 downloads last month - 14 stars on GitHub - 1 maintainer
gramep 1.2.1
GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle16 versions - Latest release: 6 months ago - 128 downloads last month - 3 stars on GitHub - 1 maintainer
vcf-kit 0.2.9
Assorted utilities for the variant call format16 versions - Latest release: over 4 years ago - 1 dependent repositories - 153 downloads last month - 131 stars on GitHub - 1 maintainer
arv 0.9.2
A fast 23andMe raw genome file parser11 versions - Latest release: over 8 years ago - 82 downloads last month - 120 stars on GitHub - 1 maintainer
vsnpdev 0.0.21
USDA APHIS Veterinary Services (VS) Mycobacterium tuberculosis complex, mainly M. bovis, and Bruc...19 versions - Latest release: over 5 years ago - 1 dependent repositories - 40 downloads last month - 21 stars on GitHub - 1 maintainer
Top 5.9% on pypi.org
40 versions - Latest release: 9 months ago - 7 dependent packages - 4 dependent repositories - 16.2 thousand downloads last month - 76 stars on GitHub - 2 maintainers
bed-reader 1.0.6
Read and write the PLINK BED format, simply and efficiently.40 versions - Latest release: 9 months ago - 7 dependent packages - 4 dependent repositories - 16.2 thousand downloads last month - 76 stars on GitHub - 2 maintainers
Top 6.7% on pypi.org
47 versions - Latest release: 4 months ago - 2 dependent packages - 6 dependent repositories - 3.2 thousand downloads last month - 108 stars on GitHub - 1 maintainer
snps 2.10.0
tools for reading, writing, merging, and remapping SNPs47 versions - Latest release: 4 months ago - 2 dependent packages - 6 dependent repositories - 3.2 thousand downloads last month - 108 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
32 versions - Latest release: about 1 year ago - 4 dependent repositories - 2.83 thousand downloads last month - 167 stars on GitHub - 1 maintainer
lineage 4.4.1
tools for genetic genealogy and the analysis of consumer DNA test results32 versions - Latest release: about 1 year ago - 4 dependent repositories - 2.83 thousand downloads last month - 167 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
10
genomics
5
vcf
4
python
4
genotype
4
dna
3
SNP
3
genome
3
biology
3
protein
2
VCF
2
pipeline
2
genetics
2
snp
2
gene
2
plink
2
vcf-files
2
chromosomes
2
genotyping
1
arageno
1
arabidopsis
1
1001genomes
1
genotyping-by-sequencing
1
snpmatch
1
genome-visualization
1
heatmap
1
pypi-package
1
variant-analysis
1
viral-genomics
1
data
1
sequencing
1
Coverage
1
Low
1
Genotyping
1
writer
1
bed-format
1
reader
1
file-format
1
regions
1
ranges
1
intervals
1
sets
1
Mutation
1
RSID
1
23andme
1
snpedia
1
analysis-pipeline
1
bam-files
1
brucella
1
freebayes
1
high
1
high-throughput-sequencing
1
mycobacterium-tuberculosis-complex
1
phylogenetics
1
tuberculosis
1
wgs
1
whole-genome-sequencing
1
genes
1
genealogy
1
ancestry
1
biological-sequence-analysis
1
genome-analysis
1
maximum-entropy
1
python-bioinformatics
1
sequence-analysis
1
variant
1
caller
1
format
1
genetic
1
variation
1
23andMe
1
bio
1
biopython
1
disease
1
DNA
1
health
1
RNA
1
filter
1
MAF
1
minor allele frequency
1
MAC
1
minor allele count
1
biallelic
1
monomorphic
1
singleton
1
population structure
1
d-statistics
1
Fst
1
multiqc
1
encoding
1
dna-sequence-alignment
1
file-converter
1
genotypes
1
Simulation
1
Genome
1
SNPs
1
SV
1
SVs
1
Bioinformatics
1
mutation
1