Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "snps" keyword
virheat 0.5.4
virHEAT creates a heatmap from vcf files and maps positions on to a reference genome.11 versions - Latest release: 7 months ago - 130 downloads last month - 10 stars on GitHub - 1 maintainer
snpio 1.0.5
Reads and writes VCF, PHYLIP, and STRUCTURE files and performs data filtering on the alignment.16 versions - Latest release: 8 months ago - 1 dependent package - 139 downloads last month - 2 stars on GitHub - 1 maintainer
pygeno 2.0.0
A python package for Personalized Genomics and Proteomics18 versions - Latest release: about 4 years ago - 1 dependent repositories - 127 downloads last month - 307 stars on GitHub - 2 maintainers
Top 6.7% on pypi.org
44 versions - Latest release: 20 days ago - 2 dependent packages - 6 dependent repositories - 3.08 thousand downloads last month - 91 stars on GitHub - 1 maintainer
snps 2.8.1
tools for reading, writing, merging, and remapping SNPs44 versions - Latest release: 20 days ago - 2 dependent packages - 6 dependent repositories - 3.08 thousand downloads last month - 91 stars on GitHub - 1 maintainer
Top 5.9% on pypi.org
33 versions - Latest release: 30 days ago - 7 dependent packages - 4 dependent repositories - 22 thousand downloads last month - 67 stars on GitHub - 2 maintainers
bed-reader 1.0.4
Read and write the PLINK BED format, simply and efficiently.33 versions - Latest release: 30 days ago - 7 dependent packages - 4 dependent repositories - 22 thousand downloads last month - 67 stars on GitHub - 2 maintainers
vsnpdev 0.0.21
USDA APHIS Veterinary Services (VS) Mycobacterium tuberculosis complex, mainly M. bovis, and Bruc...19 versions - Latest release: over 4 years ago - 1 dependent repositories - 95 downloads last month - 18 stars on GitHub - 1 maintainer
vcf-kit 0.2.9
Assorted utilities for the variant call format16 versions - Latest release: over 3 years ago - 1 dependent repositories - 202 downloads last month - 117 stars on GitHub - 1 maintainer
snpmatch 4.0.0
A simple python library to identify the most likely strain given the SNPs for a sample14 versions - Latest release: over 4 years ago - 1 dependent repositories - 123 downloads last month - 9 stars on GitHub - 1 maintainer
mgkit 0.5.8
Metagenomics Framework30 versions - Latest release: over 2 years ago - 2 dependent repositories - 147 downloads last month - 12 stars on GitHub - 1 maintainer
mutation-simulator 3.0.2
A tool for simulating random mutations in any genome3 versions - Latest release: 4 months ago - 1 dependent repositories - 52 downloads last month - 30 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
31 versions - Latest release: 2 months ago - 4 dependent repositories - 1.91 thousand downloads last month - 139 stars on GitHub - 1 maintainer
lineage 4.4.0
tools for genetic genealogy and the analysis of consumer DNA test results31 versions - Latest release: 2 months ago - 4 dependent repositories - 1.91 thousand downloads last month - 139 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
47 versions - Latest release: 6 months ago - 2 dependent packages - 13 dependent repositories - 4.03 thousand downloads last month - 22 stars on GitHub - 4 maintainers
pysnptools 0.5.11
PySnpTools47 versions - Latest release: 6 months ago - 2 dependent packages - 13 dependent repositories - 4.03 thousand downloads last month - 22 stars on GitHub - 4 maintainers
arv 0.9.2
A fast 23andMe raw genome file parser11 versions - Latest release: about 7 years ago - 221 downloads last month - 114 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
9
genomics
5
genotype
4
vcf
4
genome
3
SNP
3
dna
3
biology
3
python
3
vcf-files
2
VCF
2
snp
2
pipeline
2
protein
2
chromosomes
2
gene
2
genetics
2
plink
2
library
1
metagenomics
1
gff
1
fasta
1
metagenomic-pipeline
1
microbiology
1
Mutation
1
Simulation
1
snpedia
1
snpmatch
1
genotyping-by-sequencing
1
genotyping
1
arageno
1
arabidopsis
1
1001genomes
1
data
1
sequencing
1
Coverage
1
Low
1
Genotyping
1
variation
1
genetic
1
23andme
1
RSID
1
RNA
1
health
1
DNA
1
disease
1
biopython
1
bio
1
23andMe
1
writer
1
bed-format
1
reader
1
file-format
1
regions
1
ranges
1
intervals
1
sets
1
gwas
1
ancestry
1
genealogy
1
genes
1
svs
1
sv
1
simulator
1
simulation
1
mutation
1
Bioinformatics
1
SVs
1
SV
1
SNPs
1
Genome
1
format
1
research
1
medicine
1
annotations
1
proteomics
1
proteogenomics
1
structure-alignment
1
principal-component-analysis
1
plots
1
phylip
1
missing-data
1
minor-allele-frequency
1
input-output
1
genotypes
1
file-converter
1
dna-sequence-alignment
1
biallelic
1
MAF
1
filtering
1
missing data
1
STRUCTURE
1
PHYLIP
1
population genetics
1
viral-genomics
1
variant-analysis
1
pypi-package
1
heatmap
1
genome-visualization
1
caller
1